Wall clock time and date at job start Thu Apr 9 2020 12:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46499 * 119.99638 * 2 1 4 4 C 1.39671 * 119.99776 * 179.72270 * 2 1 3 5 5 C 1.38933 * 120.07414 * 174.00716 * 4 2 1 6 6 C 1.38074 * 119.92980 * 179.79280 * 5 4 2 7 7 C 1.38316 * 120.07055 * 0.48166 * 6 5 4 8 8 C 1.38257 * 120.15110 * 359.74922 * 7 6 5 9 9 C 1.50698 * 119.96727 * 179.97438 * 8 7 6 10 10 C 1.52998 * 109.47498 * 270.02586 * 9 8 7 11 11 C 1.52993 * 109.47283 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47227 * 180.02562 * 11 10 9 13 13 H 1.07997 * 120.00153 * 359.97438 * 12 11 10 14 14 C 1.37882 * 120.00157 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99871 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00145 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.46960 * 59.99863 * 16 14 12 18 18 H 1.48495 * 109.47535 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47020 * 300.00046 * 16 14 12 20 20 C 1.38131 * 120.07273 * 0.02562 * 8 7 6 21 21 H 1.09000 * 109.46913 * 185.33217 * 1 2 3 22 22 H 1.09004 * 109.47100 * 305.32943 * 1 2 3 23 23 H 1.09005 * 109.47093 * 65.33047 * 1 2 3 24 24 H 1.09003 * 109.46928 * 269.72319 * 3 2 1 25 25 H 1.08994 * 109.47541 * 29.72572 * 3 2 1 26 26 H 1.09002 * 109.46719 * 149.72706 * 3 2 1 27 27 H 1.08011 * 120.03508 * 0.02562 * 5 4 2 28 28 H 1.07996 * 119.97102 * 180.21282 * 6 5 4 29 29 H 1.08001 * 119.92465 * 179.76810 * 7 6 5 30 30 H 1.09001 * 109.46558 * 30.02346 * 9 8 7 31 31 H 1.08994 * 109.47622 * 150.02105 * 9 8 7 32 32 H 1.08999 * 109.46840 * 299.99993 * 10 9 8 33 33 H 1.09005 * 109.46740 * 59.99416 * 10 9 8 34 34 H 1.08999 * 109.47620 * 300.00058 * 11 10 9 35 35 H 1.08999 * 109.46906 * 60.00095 * 11 10 9 36 36 H 0.96999 * 119.99821 * 179.97438 * 15 14 12 37 37 H 1.08008 * 120.03553 * 179.97438 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1634 -1.2096 0.0059 5 6 3.5470 -1.2153 -0.1196 6 6 4.2347 -2.4126 -0.1092 7 6 3.5467 -3.6060 0.0160 8 6 2.1694 -3.6042 0.1363 9 6 1.4240 -4.9068 0.2720 10 6 1.0468 -5.4257 -1.1171 11 6 0.2906 -6.7485 -0.9793 12 6 -0.0804 -7.2599 -2.3475 13 1 0.1953 -6.6975 -3.2273 14 6 -0.7726 -8.4454 -2.4761 15 7 -1.1097 -9.1296 -1.4047 16 14 -1.2331 -9.0789 -4.1720 17 1 -0.0002 -9.2949 -4.9713 18 1 -1.9680 -10.3623 -4.0384 19 1 -2.0974 -8.0829 -4.8546 20 6 1.4757 -2.4097 0.1313 21 1 -0.3633 -1.0232 0.0955 22 1 -0.3633 0.5943 0.8384 23 1 -0.3633 0.4289 -0.9339 24 1 2.3834 1.5809 -1.0277 25 1 1.6063 2.0296 0.5095 26 1 3.1478 1.1396 0.5181 27 1 4.0845 -0.2840 -0.2215 28 1 5.3106 -2.4176 -0.2032 29 1 4.0867 -4.5413 0.0202 30 1 2.0584 -5.6380 0.7730 31 1 0.5192 -4.7484 0.8586 32 1 0.4124 -4.6946 -1.6181 33 1 1.9517 -5.5842 -1.7037 34 1 0.9253 -7.4796 -0.4784 35 1 -0.6143 -6.5904 -0.3925 36 1 -1.5970 -9.9634 -1.4952 37 1 0.3997 -2.4091 0.2249 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250065535.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:02:56 Heat of formation + Delta-G solvation = -2.723631 kcal Electronic energy + Delta-G solvation = -15582.543164 eV Core-core repulsion = 13130.397241 eV Total energy + Delta-G solvation = -2452.145923 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.148 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.59914 -37.59993 -36.09406 -34.37753 -31.98661 -30.92864 -29.39837 -28.05369 -25.65613 -25.25036 -22.65180 -22.04114 -20.98353 -18.55400 -18.00166 -16.82949 -16.54298 -16.31458 -15.90981 -15.64478 -15.08504 -14.56988 -14.52643 -14.33342 -13.92505 -13.36970 -13.29703 -13.09705 -12.91104 -12.81250 -12.58423 -12.44785 -12.42284 -12.19399 -11.76329 -11.43728 -11.30666 -11.10011 -10.62848 -10.54295 -9.55571 -8.19563 -8.14077 -6.30745 0.57294 0.74896 1.39600 1.43068 1.51138 2.29188 2.41579 3.00208 3.13193 3.88636 4.00722 4.12357 4.33311 4.35848 4.47696 4.53034 4.57277 4.63259 4.68720 4.76208 4.78552 4.84170 4.91140 4.95701 5.11324 5.17419 5.22934 5.28511 5.42160 5.53449 5.68437 5.74454 5.85975 5.93208 6.03067 6.26672 6.40452 6.61484 6.85553 7.38214 8.92323 Molecular weight = 233.15amu Principal moments of inertia in cm(-1) A = 0.034866 B = 0.004498 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.871549 B = 6223.905618 C = 6555.125189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.648 5.648 3 C 0.092 3.908 4 C 0.205 3.795 5 C -0.211 4.211 6 C -0.071 4.071 7 C -0.193 4.193 8 C -0.037 4.037 9 C -0.075 4.075 10 C -0.085 4.085 11 C 0.024 3.976 12 C -0.546 4.546 13 H 0.057 0.943 14 C 0.000 4.000 15 N -0.933 5.933 16 Si 0.965 3.035 17 H -0.267 1.267 18 H -0.281 1.281 19 H -0.267 1.267 20 C -0.214 4.214 21 H 0.068 0.932 22 H 0.071 0.929 23 H 0.058 0.942 24 H 0.050 0.950 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.141 0.859 28 H 0.145 0.855 29 H 0.119 0.881 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.044 0.956 33 H 0.047 0.953 34 H -0.007 1.007 35 H -0.007 1.007 36 H 0.264 0.736 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.645 20.422 3.596 22.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.360 5.360 3 C -0.050 4.050 4 C 0.103 3.897 5 C -0.233 4.233 6 C -0.089 4.089 7 C -0.213 4.213 8 C -0.038 4.038 9 C -0.113 4.113 10 C -0.123 4.123 11 C -0.013 4.013 12 C -0.584 4.584 13 H 0.075 0.925 14 C -0.197 4.197 15 N -0.573 5.573 16 Si 0.789 3.211 17 H -0.192 1.192 18 H -0.206 1.206 19 H -0.192 1.192 20 C -0.236 4.236 21 H 0.087 0.913 22 H 0.090 0.910 23 H 0.077 0.923 24 H 0.069 0.931 25 H 0.101 0.899 26 H 0.091 0.909 27 H 0.159 0.841 28 H 0.163 0.837 29 H 0.137 0.863 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.012 0.988 35 H 0.011 0.989 36 H 0.073 0.927 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.448 20.469 3.653 22.086 hybrid contribution -0.559 -0.803 -0.633 1.165 sum 6.889 19.666 3.020 21.056 Atomic orbital electron populations 1.21797 0.79063 1.03099 1.01892 1.46525 1.05624 1.03269 1.80613 1.21736 0.97490 0.84135 1.01652 1.17975 0.91915 0.85971 0.93825 1.20875 0.91980 0.99367 1.11053 1.21142 1.00506 0.91326 0.95952 1.21007 0.93526 0.98948 1.07805 1.19778 0.94232 0.94100 0.95671 1.20604 0.99335 0.93756 0.97592 1.21350 0.98885 0.96644 0.95400 1.19033 0.94128 0.92620 0.95543 1.21681 1.35995 1.06825 0.93936 0.92506 1.25985 0.95689 0.96999 1.01076 1.70092 1.40491 1.16015 1.30732 0.85504 0.78679 0.77612 0.79281 1.19179 1.20573 1.19211 1.20701 0.99844 0.91197 1.11870 0.91325 0.91038 0.92311 0.93111 0.89942 0.90891 0.84122 0.83744 0.86265 0.91376 0.91748 0.93694 0.93460 0.98826 0.98900 0.92712 0.86121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.56 10.62 127.77 1.36 2.92 16 2 N -0.65 -13.90 3.41 -747.26 -2.55 -16.45 16 3 C 0.09 1.32 10.09 127.77 1.29 2.61 16 4 C 0.20 5.48 6.53 38.21 0.25 5.73 16 5 C -0.21 -5.05 9.16 22.40 0.21 -4.85 16 6 C -0.07 -1.76 10.04 22.25 0.22 -1.53 16 7 C -0.19 -5.77 9.70 22.29 0.22 -5.55 16 8 C -0.04 -1.23 5.13 -19.89 -0.10 -1.33 16 9 C -0.08 -2.81 5.34 29.85 0.16 -2.65 16 10 C -0.09 -3.78 5.13 30.59 0.16 -3.63 16 11 C 0.02 1.31 4.97 29.85 0.15 1.46 16 12 C -0.55 -32.40 9.11 25.60 0.23 -32.17 16 13 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 14 C 0.00 0.01 5.46 84.66 0.46 0.47 16 15 N -0.93 -58.07 13.29 21.45 0.28 -57.79 16 16 Si 0.97 45.28 29.54 68.60 2.03 47.31 16 17 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 18 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 19 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 20 C -0.21 -6.59 8.97 22.40 0.20 -6.39 16 21 H 0.07 1.44 5.31 -2.39 -0.01 1.43 16 22 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 23 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 24 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.08 0.86 8.07 -2.39 -0.02 0.84 16 26 H 0.07 0.95 6.48 -2.39 -0.02 0.93 16 27 H 0.14 2.58 6.33 -2.91 -0.02 2.56 16 28 H 0.14 2.68 8.06 -2.91 -0.02 2.65 16 29 H 0.12 3.40 8.06 -2.91 -0.02 3.38 16 30 H 0.07 2.48 8.08 -2.39 -0.02 2.47 16 31 H 0.06 2.36 8.08 -2.39 -0.02 2.34 16 32 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 34 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 35 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 36 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 37 H 0.12 3.62 5.74 -2.91 -0.02 3.60 16 Total: -1.00 -68.27 305.07 5.59 -62.68 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: 1.02 Total: 9.16 kcal Atomic # 6 Polarization: -49.71 SS G_CDS: 4.80 Total: -44.91 kcal Atomic # 7 Polarization: -71.98 SS G_CDS: -2.26 Total: -74.24 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -68.27 5.59 -62.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065535.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.961 kcal (2) G-P(sol) polarization free energy of solvation -68.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds