Wall clock time and date at job start Thu Apr 9 2020 12:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46893 * 111.00249 * 2 1 4 4 C 1.39680 * 110.99988 * 236.04443 * 2 1 3 5 5 C 1.38930 * 120.07173 * 60.00136 * 4 2 1 6 6 C 1.38081 * 119.92492 * 179.97438 * 5 4 2 7 7 C 1.38314 * 120.07583 * 0.02562 * 6 5 4 8 8 C 1.38262 * 120.14615 * 359.97438 * 7 6 5 9 9 C 1.38132 * 120.07744 * 359.74498 * 8 7 6 10 10 C 1.50694 * 120.03838 * 180.27489 * 9 8 7 11 11 C 1.53005 * 109.47176 * 265.25362 * 10 9 8 12 12 C 1.52994 * 109.47496 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47537 * 180.02562 * 12 11 10 14 14 H 1.07995 * 119.99402 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00181 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99694 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 119.99981 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47202 * 90.00053 * 17 15 13 19 19 H 1.48497 * 109.47252 * 210.00179 * 17 15 13 20 20 H 1.48506 * 109.47326 * 330.00241 * 17 15 13 21 21 H 1.09002 * 109.47401 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46874 * 60.00002 * 1 2 3 23 23 H 1.09004 * 109.46970 * 300.00135 * 1 2 3 24 24 H 1.09002 * 109.47429 * 59.99866 * 3 2 1 25 25 H 1.09004 * 109.47266 * 180.02562 * 3 2 1 26 26 H 1.09006 * 109.47224 * 299.99707 * 3 2 1 27 27 H 1.08000 * 120.03862 * 359.97438 * 5 4 2 28 28 H 1.07999 * 119.96431 * 180.02562 * 6 5 4 29 29 H 1.07990 * 119.92620 * 179.97438 * 7 6 5 30 30 H 1.07998 * 119.96064 * 180.02562 * 8 7 6 31 31 H 1.08995 * 109.47747 * 25.25811 * 10 9 8 32 32 H 1.08998 * 109.46978 * 145.25728 * 10 9 8 33 33 H 1.09004 * 109.47330 * 300.00599 * 11 10 9 34 34 H 1.08998 * 109.46868 * 60.00299 * 11 10 9 35 35 H 1.09004 * 109.47219 * 300.00544 * 12 11 10 36 36 H 1.09011 * 109.47122 * 59.99864 * 12 11 10 37 37 H 0.97002 * 119.99850 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9696 -0.7284 -1.0816 5 6 1.6579 -0.3480 -2.3810 6 6 2.1548 -1.0699 -3.4480 7 6 2.9616 -2.1709 -3.2244 8 6 3.2737 -2.5521 -1.9326 9 6 2.7847 -1.8310 -0.8607 10 6 3.1306 -2.2436 0.5468 11 6 2.0204 -3.1371 1.1037 12 6 2.3712 -3.5555 2.5329 13 6 1.2781 -4.4362 3.0812 14 1 0.4193 -4.6739 2.4710 15 6 1.3749 -4.9391 4.3613 16 7 2.4209 -4.6498 5.1040 17 14 0.0195 -6.0300 5.0411 18 1 0.3224 -7.4495 4.7272 19 1 -0.0645 -5.8558 6.5134 20 1 -1.2769 -5.6522 4.4232 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 1.6460 1.8948 0.8900 25 1 3.0851 1.3422 -0.0005 26 1 1.6460 1.8947 -0.8901 27 1 1.0276 0.5113 -2.5563 28 1 1.9132 -0.7746 -4.4584 29 1 3.3486 -2.7340 -4.0607 30 1 3.9043 -3.4120 -1.7615 31 1 4.0719 -2.7930 0.5435 32 1 3.2302 -1.3559 1.1715 33 1 1.0790 -2.5877 1.1070 34 1 1.9208 -4.0248 0.4790 35 1 3.3127 -4.1048 2.5300 36 1 2.4706 -2.6676 3.1574 37 1 2.4892 -5.0040 6.0045 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065797.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:03:01 Heat of formation + Delta-G solvation = 13.970787 kcal Electronic energy + Delta-G solvation = -16118.266409 eV Core-core repulsion = 13666.844411 eV Total energy + Delta-G solvation = -2451.421998 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.148 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.88114 -36.37333 -34.61439 -32.54238 -30.28296 -29.69030 -27.50002 -26.64063 -24.41930 -23.46889 -21.36472 -20.61685 -19.76848 -16.84446 -16.13418 -15.68486 -15.26716 -14.89393 -14.39990 -14.11354 -13.73243 -13.37712 -12.98170 -12.69841 -12.27996 -12.18275 -12.05817 -11.65871 -11.59710 -11.32672 -11.12793 -10.92489 -10.56978 -10.54866 -10.37922 -9.47828 -9.25855 -9.00838 -8.64551 -8.32844 -8.25017 -8.22366 -5.90731 -3.92022 1.44221 1.57135 3.37073 3.42943 3.46771 3.88814 4.00554 4.53526 4.99737 5.05409 5.16378 5.27235 5.33316 5.44846 5.47823 5.53546 5.60217 5.73519 5.86281 5.90983 6.01593 6.04042 6.16602 6.33617 6.51898 6.60284 6.64845 6.68096 6.97844 7.01448 7.11491 7.12624 7.32746 7.59877 7.80627 7.99396 8.12059 8.55259 9.15510 9.71113 11.20696 Molecular weight = 233.15amu Principal moments of inertia in cm(-1) A = 0.030285 B = 0.005681 C = 0.005307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.318229 B = 4927.563740 C = 5274.326433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.501 5.501 3 C 0.031 3.969 4 C 0.085 3.915 5 C -0.150 4.150 6 C -0.128 4.128 7 C -0.122 4.122 8 C -0.117 4.117 9 C -0.041 4.041 10 C -0.075 4.075 11 C -0.095 4.095 12 C 0.022 3.978 13 C -0.515 4.515 14 H 0.053 0.947 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.889 3.111 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.275 1.275 21 H 0.073 0.927 22 H 0.023 0.977 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.024 0.976 27 H 0.113 0.887 28 H 0.115 0.885 29 H 0.118 0.882 30 H 0.125 0.875 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.051 0.949 34 H 0.040 0.960 35 H 0.013 0.987 36 H 0.017 0.983 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.304 10.025 -14.882 17.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.222 5.222 3 C -0.116 4.116 4 C -0.008 4.008 5 C -0.170 4.170 6 C -0.147 4.147 7 C -0.140 4.140 8 C -0.136 4.136 9 C -0.042 4.042 10 C -0.112 4.112 11 C -0.132 4.132 12 C -0.015 4.015 13 C -0.554 4.554 14 H 0.071 0.929 15 C -0.145 4.145 16 N -0.537 5.537 17 Si 0.717 3.283 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.200 1.200 21 H 0.092 0.908 22 H 0.042 0.958 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.043 0.957 27 H 0.131 0.869 28 H 0.133 0.867 29 H 0.136 0.864 30 H 0.142 0.858 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.031 0.969 36 H 0.035 0.965 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.091 9.792 -14.243 17.285 hybrid contribution -1.049 -0.217 -0.346 1.126 sum -1.140 9.575 -14.589 17.487 Atomic orbital electron populations 1.22430 0.85900 1.02863 1.00357 1.59480 1.08340 1.13440 1.40916 1.22417 1.00833 0.87859 1.00511 1.18668 0.98251 0.95550 0.88368 1.21543 1.01501 1.00531 0.93399 1.20877 0.99127 0.96468 0.98205 1.21107 0.98837 0.97217 0.96862 1.21099 1.00679 0.99789 0.91984 1.20170 0.94464 0.92681 0.96858 1.20641 0.99387 1.00633 0.90574 1.21516 0.96416 0.96471 0.98835 1.19095 0.96494 0.96130 0.89742 1.21286 1.05829 1.29601 0.98660 0.92893 1.25014 0.95713 0.96640 0.97131 1.69971 1.28815 1.45421 1.09461 0.86641 0.82570 0.80979 0.78083 1.20760 1.21290 1.19954 0.90807 0.95802 0.90859 0.90934 0.91339 0.95744 0.86913 0.86705 0.86407 0.85751 0.92279 0.90467 0.93057 0.94135 0.96908 0.96510 0.93152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.28 60.07 0.56 0.97 16 2 N -0.50 -7.39 4.03 -186.85 -0.75 -8.15 16 3 C 0.03 0.37 9.33 60.06 0.56 0.93 16 4 C 0.09 1.29 4.69 -83.79 -0.39 0.90 16 5 C -0.15 -1.97 8.66 -39.38 -0.34 -2.31 16 6 C -0.13 -1.55 10.04 -39.61 -0.40 -1.95 16 7 C -0.12 -1.52 10.04 -39.54 -0.40 -1.92 16 8 C -0.12 -1.69 9.68 -39.61 -0.38 -2.07 16 9 C -0.04 -0.66 5.15 -104.42 -0.54 -1.20 16 10 C -0.07 -1.38 5.04 -27.88 -0.14 -1.53 16 11 C -0.09 -2.07 5.13 -26.73 -0.14 -2.21 16 12 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 13 C -0.52 -15.08 9.11 -34.44 -0.31 -15.39 16 14 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.90 -27.61 13.29 55.43 0.74 -26.87 16 17 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 21 H 0.07 1.08 8.11 -51.93 -0.42 0.66 16 22 H 0.02 0.27 7.26 -51.93 -0.38 -0.10 16 23 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 24 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.07 0.83 8.12 -51.93 -0.42 0.40 16 26 H 0.02 0.26 7.48 -51.93 -0.39 -0.13 16 27 H 0.11 1.30 7.08 -52.49 -0.37 0.93 16 28 H 0.11 1.10 8.06 -52.49 -0.42 0.68 16 29 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 30 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 31 H 0.06 1.05 8.05 -51.93 -0.42 0.64 16 32 H 0.08 1.47 7.63 -51.93 -0.40 1.08 16 33 H 0.05 1.14 8.13 -51.93 -0.42 0.71 16 34 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.02 0.47 8.14 -51.92 -0.42 0.05 16 37 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 307.55 15.07 4.63 4.63 Total: -1.00 -31.38 307.55 -8.70 -40.08 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -6.14 Total: -3.07 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: -2.16 Total: -23.78 kcal Atomic # 7 Polarization: -35.00 SS G_CDS: -0.02 Total: -35.02 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.38 -8.70 -40.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065797.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.051 kcal (2) G-P(sol) polarization free energy of solvation -31.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds