Wall clock time and date at job start Thu Apr 9 2020 12:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46893 * 111.00249 * 2 1 4 4 C 1.39680 * 110.99988 * 236.04443 * 2 1 3 5 5 C 1.38930 * 120.07173 * 60.00136 * 4 2 1 6 6 C 1.38081 * 119.92492 * 179.97438 * 5 4 2 7 7 C 1.38314 * 120.07583 * 0.02562 * 6 5 4 8 8 C 1.38262 * 120.14615 * 359.97438 * 7 6 5 9 9 C 1.38132 * 120.07744 * 359.74498 * 8 7 6 10 10 C 1.50694 * 120.03838 * 180.27489 * 9 8 7 11 11 C 1.53005 * 109.47176 * 265.25362 * 10 9 8 12 12 C 1.52994 * 109.47496 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47537 * 180.02562 * 12 11 10 14 14 H 1.07995 * 119.99402 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00181 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99694 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 119.99981 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47202 * 90.00053 * 17 15 13 19 19 H 1.48497 * 109.47252 * 210.00179 * 17 15 13 20 20 H 1.48506 * 109.47326 * 330.00241 * 17 15 13 21 21 H 1.09002 * 109.47401 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46874 * 60.00002 * 1 2 3 23 23 H 1.09004 * 109.46970 * 300.00135 * 1 2 3 24 24 H 1.09002 * 109.47429 * 59.99866 * 3 2 1 25 25 H 1.09004 * 109.47266 * 180.02562 * 3 2 1 26 26 H 1.09006 * 109.47224 * 299.99707 * 3 2 1 27 27 H 1.08000 * 120.03862 * 359.97438 * 5 4 2 28 28 H 1.07999 * 119.96431 * 180.02562 * 6 5 4 29 29 H 1.07990 * 119.92620 * 179.97438 * 7 6 5 30 30 H 1.07998 * 119.96064 * 180.02562 * 8 7 6 31 31 H 1.08995 * 109.47747 * 25.25811 * 10 9 8 32 32 H 1.08998 * 109.46978 * 145.25728 * 10 9 8 33 33 H 1.09004 * 109.47330 * 300.00599 * 11 10 9 34 34 H 1.08998 * 109.46868 * 60.00299 * 11 10 9 35 35 H 1.09004 * 109.47219 * 300.00544 * 12 11 10 36 36 H 1.09011 * 109.47122 * 59.99864 * 12 11 10 37 37 H 0.97002 * 119.99850 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9696 -0.7284 -1.0816 5 6 1.6579 -0.3480 -2.3810 6 6 2.1548 -1.0699 -3.4480 7 6 2.9616 -2.1709 -3.2244 8 6 3.2737 -2.5521 -1.9326 9 6 2.7847 -1.8310 -0.8607 10 6 3.1306 -2.2436 0.5468 11 6 2.0204 -3.1371 1.1037 12 6 2.3712 -3.5555 2.5329 13 6 1.2781 -4.4362 3.0812 14 1 0.4193 -4.6739 2.4710 15 6 1.3749 -4.9391 4.3613 16 7 2.4209 -4.6498 5.1040 17 14 0.0195 -6.0300 5.0411 18 1 0.3224 -7.4495 4.7272 19 1 -0.0645 -5.8558 6.5134 20 1 -1.2769 -5.6522 4.4232 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 1.6460 1.8948 0.8900 25 1 3.0851 1.3422 -0.0005 26 1 1.6460 1.8947 -0.8901 27 1 1.0276 0.5113 -2.5563 28 1 1.9132 -0.7746 -4.4584 29 1 3.3486 -2.7340 -4.0607 30 1 3.9043 -3.4120 -1.7615 31 1 4.0719 -2.7930 0.5435 32 1 3.2302 -1.3559 1.1715 33 1 1.0790 -2.5877 1.1070 34 1 1.9208 -4.0248 0.4790 35 1 3.3127 -4.1048 2.5300 36 1 2.4706 -2.6676 3.1574 37 1 2.4892 -5.0040 6.0045 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250065797.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:02:59 Heat of formation + Delta-G solvation = -3.061759 kcal Electronic energy + Delta-G solvation = -16119.004995 eV Core-core repulsion = 13666.844411 eV Total energy + Delta-G solvation = -2452.160585 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.148 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -40.95484 -37.41758 -36.40371 -34.48798 -31.87014 -30.77066 -28.49469 -28.39890 -25.61827 -25.13113 -22.66430 -22.05528 -21.25797 -18.48597 -17.76568 -16.84734 -16.57188 -16.27547 -15.92546 -15.33583 -15.05943 -14.69663 -14.45194 -14.18582 -13.78989 -13.41449 -13.16278 -13.06547 -13.00904 -12.64752 -12.62900 -12.54582 -12.33252 -12.14596 -11.95872 -11.35316 -11.27907 -11.09635 -10.52973 -9.69395 -9.42881 -9.31713 -8.17507 -6.28701 0.41524 0.50250 1.39572 1.41585 1.52734 2.42325 2.84020 2.99483 3.14812 3.98827 3.99558 4.19828 4.24148 4.38119 4.39318 4.48383 4.59186 4.61969 4.67409 4.73319 4.79633 4.93464 4.96656 4.97923 5.05449 5.22429 5.29403 5.35912 5.52410 5.57925 5.62456 5.68951 5.85745 5.89562 6.01194 6.02384 6.29264 6.54496 6.87829 7.39957 8.94364 Molecular weight = 233.15amu Principal moments of inertia in cm(-1) A = 0.030285 B = 0.005681 C = 0.005307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.318229 B = 4927.563740 C = 5274.326433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.529 5.529 3 C 0.033 3.967 4 C 0.076 3.924 5 C -0.152 4.152 6 C -0.120 4.120 7 C -0.121 4.121 8 C -0.126 4.126 9 C -0.072 4.072 10 C -0.061 4.061 11 C -0.076 4.076 12 C 0.028 3.972 13 C -0.542 4.542 14 H 0.055 0.945 15 C -0.001 4.001 16 N -0.934 5.934 17 Si 0.965 3.035 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.264 1.264 21 H 0.052 0.948 22 H 0.045 0.955 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.061 0.939 26 H 0.042 0.958 27 H 0.131 0.869 28 H 0.148 0.852 29 H 0.147 0.853 30 H 0.128 0.872 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.045 0.955 34 H 0.039 0.961 35 H -0.011 1.011 36 H -0.011 1.011 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.477 10.233 -16.806 19.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.250 5.250 3 C -0.113 4.113 4 C -0.017 4.017 5 C -0.172 4.172 6 C -0.138 4.138 7 C -0.139 4.139 8 C -0.145 4.145 9 C -0.073 4.073 10 C -0.099 4.099 11 C -0.114 4.114 12 C -0.009 4.009 13 C -0.580 4.580 14 H 0.074 0.926 15 C -0.198 4.198 16 N -0.574 5.574 17 Si 0.789 3.211 18 H -0.196 1.196 19 H -0.205 1.205 20 H -0.189 1.189 21 H 0.071 0.929 22 H 0.063 0.937 23 H 0.097 0.903 24 H 0.098 0.902 25 H 0.080 0.920 26 H 0.060 0.940 27 H 0.149 0.851 28 H 0.166 0.834 29 H 0.165 0.835 30 H 0.146 0.854 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.007 0.993 36 H 0.008 0.992 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.263 10.008 -16.181 19.068 hybrid contribution -0.649 -0.243 0.214 0.726 sum -1.912 9.765 -15.967 18.814 Atomic orbital electron populations 1.22391 0.85363 1.01853 1.01651 1.59431 1.09078 1.14899 1.41611 1.22425 1.00409 0.86803 1.01706 1.18796 0.98130 0.95348 0.89455 1.21749 1.01622 1.01207 0.92666 1.21309 0.97549 0.95462 0.99484 1.21438 0.98348 0.97438 0.96683 1.21257 1.00793 0.99832 0.92600 1.20026 0.97016 0.94624 0.95612 1.20353 0.97907 0.99192 0.92419 1.21241 0.97426 0.96957 0.95755 1.18986 0.95088 0.94401 0.92423 1.21686 1.06482 1.30368 0.99418 0.92629 1.25983 0.98379 0.98063 0.97380 1.70106 1.30877 1.46482 1.09952 0.85456 0.79307 0.78930 0.77411 1.19646 1.20535 1.18869 0.92911 0.93693 0.90329 0.90235 0.91987 0.93955 0.85073 0.83431 0.83488 0.85383 0.92421 0.91791 0.93622 0.94237 0.99252 0.99241 0.92783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.88 9.28 127.69 1.19 2.07 16 2 N -0.53 -15.42 4.03 -745.07 -3.00 -18.42 16 3 C 0.03 0.76 9.33 127.69 1.19 1.95 16 4 C 0.08 2.24 4.69 38.21 0.18 2.42 16 5 C -0.15 -3.60 8.66 22.40 0.19 -3.41 16 6 C -0.12 -2.47 10.04 22.25 0.22 -2.24 16 7 C -0.12 -2.67 10.04 22.29 0.22 -2.44 16 8 C -0.13 -3.50 9.68 22.25 0.22 -3.29 16 9 C -0.07 -2.33 5.15 -19.74 -0.10 -2.44 16 10 C -0.06 -2.35 5.04 29.85 0.15 -2.20 16 11 C -0.08 -3.46 5.13 30.59 0.16 -3.30 16 12 C 0.03 1.58 4.97 29.85 0.15 1.73 16 13 C -0.54 -32.43 9.11 25.60 0.23 -32.19 16 14 H 0.06 3.22 7.74 -2.91 -0.02 3.19 16 15 C 0.00 -0.04 5.46 84.66 0.46 0.43 16 16 N -0.93 -58.67 13.29 21.45 0.28 -58.39 16 17 Si 0.96 45.62 29.54 68.60 2.03 47.65 16 18 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 19 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 20 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 21 H 0.05 1.56 8.11 -2.39 -0.02 1.54 16 22 H 0.04 0.94 7.26 -2.39 -0.02 0.93 16 23 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 24 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.06 1.48 8.12 -2.39 -0.02 1.46 16 26 H 0.04 0.81 7.48 -2.38 -0.02 0.79 16 27 H 0.13 2.57 7.08 -2.91 -0.02 2.55 16 28 H 0.15 2.09 8.06 -2.91 -0.02 2.06 16 29 H 0.15 2.34 8.06 -2.92 -0.02 2.32 16 30 H 0.13 3.32 8.06 -2.91 -0.02 3.30 16 31 H 0.06 2.16 8.05 -2.39 -0.02 2.14 16 32 H 0.06 2.57 7.63 -2.39 -0.02 2.55 16 33 H 0.05 2.09 8.13 -2.39 -0.02 2.07 16 34 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 35 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 36 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 37 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -68.40 307.55 4.78 -63.62 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: 1.01 Total: 8.47 kcal Atomic # 6 Polarization: -47.39 SS G_CDS: 4.46 Total: -42.92 kcal Atomic # 7 Polarization: -74.09 SS G_CDS: -2.72 Total: -76.81 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -68.40 4.78 -63.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065797.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.555 kcal (2) G-P(sol) polarization free energy of solvation -68.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds