Wall clock time and date at job start Thu Apr 9 2020 12:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46497 * 119.99749 * 2 1 4 4 S 1.65597 * 120.00027 * 179.97438 * 2 1 3 5 5 O 1.42097 * 106.40316 * 336.46179 * 4 2 1 6 6 O 1.42100 * 106.40399 * 203.54265 * 4 2 1 7 7 N 1.65596 * 107.21873 * 90.00375 * 4 2 1 8 8 C 1.47586 * 134.49190 * 89.99494 * 7 4 2 9 9 C 1.53950 * 86.11354 * 155.36007 * 8 7 4 10 10 C 1.50706 * 113.73627 * 137.95493 * 9 8 7 11 11 H 1.07995 * 120.00167 * 1.64697 * 10 9 8 12 12 C 1.37879 * 119.99394 * 181.92396 * 10 9 8 13 13 N 1.31514 * 119.99350 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 120.00608 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47353 * 89.99430 * 14 12 10 16 16 H 1.48494 * 109.47031 * 209.99977 * 14 12 10 17 17 H 1.48504 * 109.46680 * 329.99678 * 14 12 10 18 18 C 1.47813 * 134.45968 * 269.86634 * 7 4 2 19 19 H 1.09000 * 109.47610 * 269.99700 * 1 2 3 20 20 H 1.08996 * 109.47195 * 30.00745 * 1 2 3 21 21 H 1.09008 * 109.46777 * 150.00054 * 1 2 3 22 22 H 1.09001 * 109.47205 * 179.97438 * 3 2 1 23 23 H 1.08994 * 109.47496 * 299.99700 * 3 2 1 24 24 H 1.09005 * 109.47389 * 59.99686 * 3 2 1 25 25 H 1.09008 * 113.76654 * 41.06239 * 8 7 4 26 26 H 1.08991 * 113.77014 * 269.66288 * 8 7 4 27 27 H 1.09000 * 113.74485 * 269.15566 * 9 8 7 28 28 H 0.97005 * 119.99656 * 180.02562 * 13 12 10 29 29 H 1.09002 * 113.76703 * 90.37808 * 18 7 4 30 30 H 1.08998 * 113.83277 * 318.91786 * 18 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 16 2.2930 -1.4341 0.0006 5 8 1.4113 -2.4062 0.5455 6 8 3.5759 -1.1566 0.5450 7 7 2.5382 -1.8593 -1.5809 8 6 3.6030 -1.5984 -2.5689 9 6 3.1338 -2.8914 -3.2603 10 6 3.0743 -2.7888 -4.7626 11 1 3.3736 -1.8747 -5.2538 12 6 2.6325 -3.8601 -5.5097 13 7 2.5801 -3.7705 -6.8208 14 14 2.1068 -5.4383 -4.6598 15 1 0.6559 -5.3743 -4.3501 16 1 2.3717 -6.5939 -5.5539 17 1 2.8752 -5.6013 -3.3995 18 6 1.7790 -2.6546 -2.5688 19 1 -0.3634 -0.0001 1.0276 20 1 -0.3633 0.8899 -0.5139 21 1 -0.3633 -0.8901 -0.5139 22 1 3.2691 1.0696 0.0005 23 1 1.9342 1.8403 -0.8899 24 1 1.9340 1.8404 0.8900 25 1 4.6101 -1.6613 -2.1564 26 1 3.4406 -0.6989 -3.1627 27 1 3.6520 -3.7863 -2.9156 28 1 2.2689 -4.5240 -7.3464 29 1 1.0796 -2.0660 -3.1625 30 1 1.3323 -3.5593 -2.1562 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001251049494.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:03:09 Heat of formation + Delta-G solvation = -35.987845 kcal Electronic energy + Delta-G solvation = -15317.770677 eV Core-core repulsion = 12662.534162 eV Total energy + Delta-G solvation = -2655.236516 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 234.082 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -38.27406 -36.96041 -36.03109 -35.53490 -32.57351 -28.78956 -28.11872 -25.45810 -24.69284 -24.21348 -19.62888 -18.55278 -17.38848 -17.34114 -16.80076 -16.07831 -14.75654 -14.67466 -14.47680 -13.76922 -13.33165 -13.08244 -12.71529 -12.58746 -12.35418 -12.26687 -11.90416 -11.77876 -11.57704 -11.55107 -11.43985 -10.95131 -10.40237 -10.01629 -9.58460 -9.29517 -9.04806 -8.68015 -8.42940 -6.19312 -4.21303 0.83682 3.07930 3.24233 3.33203 3.36574 3.78907 4.33296 4.46578 4.79993 5.07491 5.27528 5.33217 5.46026 5.57681 5.70676 5.71009 5.83664 5.91363 6.09034 6.12050 6.21846 6.39669 6.43379 6.72645 7.18595 7.34686 7.57731 8.37358 8.83143 9.41993 10.92658 Molecular weight = 234.08amu Principal moments of inertia in cm(-1) A = 0.041137 B = 0.007951 C = 0.007694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.481146 B = 3520.612652 C = 3638.306380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -1.021 6.021 3 C 0.090 3.910 4 S 2.787 3.213 5 O -0.981 6.981 6 O -0.982 6.982 7 N -1.041 6.041 8 C 0.136 3.864 9 C -0.007 4.007 10 C -0.512 4.512 11 H 0.080 0.920 12 C 0.077 3.923 13 N -0.894 5.894 14 Si 0.869 3.131 15 H -0.273 1.273 16 H -0.286 1.286 17 H -0.261 1.261 18 C 0.112 3.888 19 H 0.053 0.947 20 H 0.069 0.931 21 H 0.070 0.930 22 H 0.082 0.918 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.064 0.936 28 H 0.266 0.734 29 H 0.082 0.918 30 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.234 7.653 10.644 13.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.860 5.860 3 C -0.056 4.056 4 S 2.799 3.201 5 O -0.965 6.965 6 O -0.967 6.967 7 N -0.884 5.884 8 C 0.011 3.989 9 C -0.029 4.029 10 C -0.551 4.551 11 H 0.098 0.902 12 C -0.127 4.127 13 N -0.531 5.531 14 Si 0.696 3.304 15 H -0.198 1.198 16 H -0.212 1.212 17 H -0.185 1.185 18 C -0.013 4.013 19 H 0.072 0.928 20 H 0.087 0.913 21 H 0.089 0.911 22 H 0.101 0.899 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.087 0.913 26 H 0.096 0.904 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.101 0.899 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.063 7.176 11.515 13.910 hybrid contribution -0.669 -0.464 0.067 0.817 sum -3.732 6.712 11.582 13.897 Atomic orbital electron populations 1.21367 0.78777 1.03000 1.01668 1.57990 1.15292 1.22700 1.90061 1.21470 0.96990 0.85420 1.01686 1.01798 0.72773 0.72388 0.73102 1.93563 1.67053 1.58802 1.77127 1.93553 1.40618 1.85253 1.77257 1.60722 1.34661 1.65656 1.27343 1.22840 0.89308 1.00447 0.86288 1.21096 0.91452 0.94162 0.96162 1.20895 1.44729 1.01648 0.87835 0.90228 1.24989 0.94620 0.98439 0.94610 1.69895 1.46391 1.31923 1.04915 0.86947 0.79809 0.83433 0.80189 1.19845 1.21184 1.18525 1.23535 0.98627 0.92738 0.86398 0.92839 0.91250 0.91144 0.89898 0.92299 0.92355 0.91335 0.90405 0.91832 0.92412 0.89943 0.92094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.14 10.33 59.85 0.62 1.76 16 2 N -1.02 -14.17 3.64 -129.21 -0.47 -14.64 16 3 C 0.09 1.02 10.67 59.85 0.64 1.66 16 4 S 2.79 49.18 6.60 -107.50 -0.71 48.47 16 5 O -0.98 -19.63 17.18 -57.17 -0.98 -20.61 16 6 O -0.98 -19.09 16.67 -57.17 -0.95 -20.04 16 7 N -1.04 -19.29 4.18 -118.61 -0.50 -19.78 16 8 C 0.14 2.54 8.53 -2.96 -0.03 2.51 16 9 C -0.01 -0.15 2.90 -90.84 -0.26 -0.41 16 10 C -0.51 -13.17 9.33 -34.44 -0.32 -13.49 16 11 H 0.08 2.19 8.06 -52.49 -0.42 1.76 16 12 C 0.08 2.06 5.47 -17.82 -0.10 1.97 16 13 N -0.89 -25.74 13.96 55.43 0.77 -24.96 16 14 Si 0.87 20.31 26.96 -169.99 -4.58 15.72 16 15 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 16 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 17 H -0.26 -5.89 6.29 56.52 0.36 -5.54 16 18 C 0.11 2.24 7.71 -2.84 -0.02 2.22 16 19 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 20 H 0.07 0.64 8.07 -51.93 -0.42 0.22 16 21 H 0.07 0.86 7.79 -51.92 -0.40 0.45 16 22 H 0.08 0.99 6.91 -51.93 -0.36 0.63 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 26 H 0.08 1.36 8.09 -51.93 -0.42 0.94 16 27 H 0.06 1.42 6.70 -51.93 -0.35 1.08 16 28 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.08 1.58 8.09 -51.93 -0.42 1.16 16 30 H 0.06 1.20 7.97 -51.93 -0.41 0.79 16 LS Contribution 267.20 15.07 4.03 4.03 Total: -1.00 -31.25 267.20 -6.95 -38.20 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: -4.08 Total: -2.59 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: 0.53 Total: -3.79 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: -0.19 Total: -59.38 kcal Atomic # 8 Polarization: -38.72 SS G_CDS: -1.94 Total: -40.66 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.58 Total: 15.72 kcal Atomic # 16 Polarization: 49.18 SS G_CDS: -0.71 Total: 48.47 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -31.25 -6.95 -38.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251049494.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.213 kcal (2) G-P(sol) polarization free energy of solvation -31.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds