Wall clock time and date at job start Thu Apr 9 2020 12:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46497 * 119.99749 * 2 1 4 4 S 1.65597 * 120.00027 * 179.97438 * 2 1 3 5 5 O 1.42097 * 106.40316 * 336.46179 * 4 2 1 6 6 O 1.42100 * 106.40399 * 203.54265 * 4 2 1 7 7 N 1.65596 * 107.21873 * 90.00375 * 4 2 1 8 8 C 1.47586 * 134.49190 * 89.99494 * 7 4 2 9 9 C 1.53950 * 86.11354 * 155.36007 * 8 7 4 10 10 C 1.50706 * 113.73627 * 137.95493 * 9 8 7 11 11 H 1.07995 * 120.00167 * 1.64697 * 10 9 8 12 12 C 1.37879 * 119.99394 * 181.92396 * 10 9 8 13 13 N 1.31514 * 119.99350 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 120.00608 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47353 * 89.99430 * 14 12 10 16 16 H 1.48494 * 109.47031 * 209.99977 * 14 12 10 17 17 H 1.48504 * 109.46680 * 329.99678 * 14 12 10 18 18 C 1.47813 * 134.45968 * 269.86634 * 7 4 2 19 19 H 1.09000 * 109.47610 * 269.99700 * 1 2 3 20 20 H 1.08996 * 109.47195 * 30.00745 * 1 2 3 21 21 H 1.09008 * 109.46777 * 150.00054 * 1 2 3 22 22 H 1.09001 * 109.47205 * 179.97438 * 3 2 1 23 23 H 1.08994 * 109.47496 * 299.99700 * 3 2 1 24 24 H 1.09005 * 109.47389 * 59.99686 * 3 2 1 25 25 H 1.09008 * 113.76654 * 41.06239 * 8 7 4 26 26 H 1.08991 * 113.77014 * 269.66288 * 8 7 4 27 27 H 1.09000 * 113.74485 * 269.15566 * 9 8 7 28 28 H 0.97005 * 119.99656 * 180.02562 * 13 12 10 29 29 H 1.09002 * 113.76703 * 90.37808 * 18 7 4 30 30 H 1.08998 * 113.83277 * 318.91786 * 18 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 16 2.2930 -1.4341 0.0006 5 8 1.4113 -2.4062 0.5455 6 8 3.5759 -1.1566 0.5450 7 7 2.5382 -1.8593 -1.5809 8 6 3.6030 -1.5984 -2.5689 9 6 3.1338 -2.8914 -3.2603 10 6 3.0743 -2.7888 -4.7626 11 1 3.3736 -1.8747 -5.2538 12 6 2.6325 -3.8601 -5.5097 13 7 2.5801 -3.7705 -6.8208 14 14 2.1068 -5.4383 -4.6598 15 1 0.6559 -5.3743 -4.3501 16 1 2.3717 -6.5939 -5.5539 17 1 2.8752 -5.6013 -3.3995 18 6 1.7790 -2.6546 -2.5688 19 1 -0.3634 -0.0001 1.0276 20 1 -0.3633 0.8899 -0.5139 21 1 -0.3633 -0.8901 -0.5139 22 1 3.2691 1.0696 0.0005 23 1 1.9342 1.8403 -0.8899 24 1 1.9340 1.8404 0.8900 25 1 4.6101 -1.6613 -2.1564 26 1 3.4406 -0.6989 -3.1627 27 1 3.6520 -3.7863 -2.9156 28 1 2.2689 -4.5240 -7.3464 29 1 1.0796 -2.0660 -3.1625 30 1 1.3323 -3.5593 -2.1562 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001251049494.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:03:08 Heat of formation + Delta-G solvation = -60.138849 kcal Electronic energy + Delta-G solvation = -15318.817944 eV Core-core repulsion = 12662.534162 eV Total energy + Delta-G solvation = -2656.283782 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 234.082 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.86188 -38.42705 -37.11449 -36.95517 -34.58734 -30.54209 -29.01367 -26.99617 -26.25369 -25.48867 -21.33102 -19.87991 -19.16224 -18.72683 -18.33682 -17.36404 -16.46812 -15.89589 -15.69569 -15.29486 -14.95637 -14.53775 -14.26129 -13.89598 -13.56090 -13.45870 -13.42878 -13.30885 -13.22066 -12.78380 -12.71759 -12.57382 -12.13251 -11.81039 -11.29800 -11.16067 -10.68145 -10.20121 -9.87528 -8.25516 -6.30394 -0.53071 1.39723 1.44069 1.51873 1.79207 2.38836 2.44988 3.02379 3.13001 3.77531 3.99068 4.16843 4.38181 4.48182 4.52748 4.67175 4.68841 4.71783 4.84438 4.86782 4.89884 4.98472 5.00408 5.44052 5.60959 5.65707 5.77843 6.33043 6.76144 7.36227 8.89792 Molecular weight = 234.08amu Principal moments of inertia in cm(-1) A = 0.041137 B = 0.007951 C = 0.007694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.481146 B = 3520.612652 C = 3638.306380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -1.017 6.017 3 C 0.082 3.918 4 S 2.805 3.195 5 O -1.006 7.006 6 O -1.002 7.002 7 N -1.044 6.044 8 C 0.144 3.856 9 C -0.023 4.023 10 C -0.507 4.507 11 H 0.050 0.950 12 C 0.024 3.976 13 N -0.943 5.943 14 Si 0.923 3.077 15 H -0.261 1.261 16 H -0.289 1.289 17 H -0.248 1.248 18 C 0.117 3.883 19 H 0.065 0.935 20 H 0.097 0.903 21 H 0.061 0.939 22 H 0.073 0.927 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.060 0.940 28 H 0.266 0.734 29 H 0.089 0.911 30 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.988 8.388 12.309 15.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.859 5.859 3 C -0.063 4.063 4 S 2.816 3.184 5 O -0.990 6.990 6 O -0.986 6.986 7 N -0.885 5.885 8 C 0.019 3.981 9 C -0.044 4.044 10 C -0.546 4.546 11 H 0.068 0.932 12 C -0.174 4.174 13 N -0.583 5.583 14 Si 0.747 3.253 15 H -0.186 1.186 16 H -0.215 1.215 17 H -0.172 1.172 18 C -0.008 4.008 19 H 0.084 0.916 20 H 0.116 0.884 21 H 0.080 0.920 22 H 0.092 0.908 23 H 0.097 0.903 24 H 0.100 0.900 25 H 0.100 0.900 26 H 0.107 0.893 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.107 0.893 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.808 7.916 13.194 15.851 hybrid contribution -0.418 -0.552 -0.414 0.807 sum -4.226 7.364 12.780 15.343 Atomic orbital electron populations 1.21625 0.77144 1.04034 1.02885 1.57714 1.16315 1.22239 1.89671 1.21727 0.96266 0.84414 1.03891 1.01070 0.72224 0.72717 0.72356 1.93528 1.67523 1.60522 1.77435 1.93526 1.41983 1.85674 1.77412 1.60588 1.34390 1.66229 1.27342 1.22771 0.90121 0.99164 0.86062 1.21107 0.93557 0.95894 0.93885 1.21099 1.43162 1.00260 0.90037 0.93183 1.25726 0.95072 1.01667 0.94980 1.70025 1.48653 1.33031 1.06552 0.86080 0.80170 0.79540 0.79499 1.18571 1.21499 1.17211 1.23321 0.97480 0.93396 0.86630 0.91615 0.88397 0.91997 0.90830 0.90319 0.90001 0.90048 0.89314 0.92192 0.92460 0.89274 0.91706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.77 10.33 127.77 1.32 3.09 16 2 N -1.02 -25.27 3.64 -562.70 -2.05 -27.32 16 3 C 0.08 1.57 10.67 127.77 1.36 2.94 16 4 S 2.80 93.29 6.60 -56.49 -0.37 92.92 16 5 O -1.01 -38.47 17.18 -128.00 -2.20 -40.67 16 6 O -1.00 -37.11 16.67 -128.00 -2.13 -39.24 16 7 N -1.04 -36.67 4.18 -529.18 -2.21 -38.88 16 8 C 0.14 5.13 8.53 86.49 0.74 5.87 16 9 C -0.02 -0.97 2.90 -10.88 -0.03 -1.01 16 10 C -0.51 -26.18 9.33 25.60 0.24 -25.94 16 11 H 0.05 2.82 8.06 -2.91 -0.02 2.79 16 12 C 0.02 1.30 5.47 84.66 0.46 1.77 16 13 N -0.94 -55.36 13.96 21.45 0.30 -55.06 16 14 Si 0.92 41.43 26.96 68.60 1.85 43.28 16 15 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 16 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 17 H -0.25 -10.55 6.29 99.48 0.63 -9.92 16 18 C 0.12 4.49 7.71 86.44 0.67 5.15 16 19 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 20 H 0.10 1.41 8.07 -2.39 -0.02 1.40 16 21 H 0.06 1.36 7.79 -2.38 -0.02 1.34 16 22 H 0.07 1.57 6.91 -2.39 -0.02 1.56 16 23 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 25 H 0.08 2.69 8.14 -2.38 -0.02 2.67 16 26 H 0.09 2.97 8.09 -2.39 -0.02 2.95 16 27 H 0.06 2.61 6.70 -2.39 -0.02 2.59 16 28 H 0.27 14.74 8.31 -92.70 -0.77 13.97 16 29 H 0.09 3.26 8.09 -2.39 -0.02 3.24 16 30 H 0.06 2.42 7.97 -2.39 -0.02 2.40 16 Total: -1.00 -66.31 267.20 -1.02 -67.33 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: 1.04 Total: 5.78 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: 4.76 Total: -8.14 kcal Atomic # 7 Polarization: -117.30 SS G_CDS: -3.96 Total: -121.26 kcal Atomic # 8 Polarization: -75.58 SS G_CDS: -4.33 Total: -79.92 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 1.85 Total: 43.28 kcal Atomic # 16 Polarization: 93.29 SS G_CDS: -0.37 Total: 92.92 kcal Total: -66.31 -1.02 -67.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251049494.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.189 kcal (2) G-P(sol) polarization free energy of solvation -66.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds