Wall clock time and date at job start Thu Apr 9 2020 12:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47334 * 336.43114 * 3 2 1 5 5 C 1.37097 * 120.00403 * 264.23996 * 4 3 2 6 6 H 1.08005 * 120.00128 * 197.72123 * 5 4 3 7 7 C 1.38951 * 119.99877 * 17.71751 * 5 4 3 8 8 N 1.31409 * 119.99756 * 21.43672 * 7 5 4 9 9 Si 1.86797 * 119.99959 * 201.43602 * 7 5 4 10 10 H 1.48497 * 109.47356 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47119 * 120.00425 * 9 7 5 12 12 H 1.48504 * 109.47145 * 240.00095 * 9 7 5 13 13 C 1.34778 * 119.99712 * 84.23648 * 4 3 2 14 14 O 1.21296 * 119.99951 * 180.02562 * 13 4 3 15 15 C 1.50696 * 120.00272 * 0.02562 * 13 4 3 16 16 C 1.53891 * 113.59042 * 179.97438 * 15 13 4 17 17 C 1.53260 * 86.88178 * 220.34356 * 16 15 13 18 18 C 1.52459 * 128.57883 * 165.10963 * 17 16 15 19 19 C 1.52590 * 128.58356 * 245.00965 * 17 16 15 20 20 C 1.53254 * 87.69267 * 25.08621 * 17 16 15 21 21 H 1.09004 * 109.47497 * 216.43599 * 3 2 1 22 22 H 1.09001 * 109.47791 * 96.43470 * 3 2 1 23 23 H 0.97003 * 119.99951 * 179.97438 * 8 7 5 24 24 H 1.09003 * 112.82719 * 311.11602 * 15 13 4 25 25 H 1.09000 * 113.64379 * 105.84850 * 16 15 13 26 26 H 1.08997 * 113.72693 * 334.85863 * 16 15 13 27 27 H 1.09007 * 117.50964 * 225.04907 * 18 17 16 28 28 H 1.09002 * 117.51767 * 10.11336 * 18 17 16 29 29 H 1.08992 * 117.53932 * 134.99016 * 19 17 16 30 30 H 1.09000 * 117.49984 * 349.86271 * 19 17 16 31 31 H 1.08994 * 113.65035 * 89.40737 * 20 17 16 32 32 H 1.09004 * 113.64302 * 220.41847 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0969 -1.2651 0.5523 5 6 3.4378 -1.3486 1.8775 6 1 4.0546 -2.1638 2.2261 7 6 2.9899 -0.3844 2.7722 8 7 1.9358 0.3438 2.4801 9 14 3.8862 -0.1235 4.3902 10 1 5.0322 -1.0637 4.4785 11 1 4.3847 1.2735 4.4603 12 1 2.9536 -0.3734 5.5186 13 6 3.2115 -2.3475 -0.2426 14 8 3.6159 -3.3956 0.2148 15 6 2.8373 -2.2556 -1.6994 16 6 3.0256 -3.5755 -2.4681 17 6 3.5662 -2.7275 -3.6246 18 6 4.3482 -3.1818 -4.8520 19 6 2.9734 -2.5279 -5.0164 20 6 3.9483 -1.6668 -2.5866 21 1 2.9710 0.8276 0.6104 22 1 2.9714 0.1160 -1.0212 23 1 1.6229 1.0167 3.1048 24 1 1.8626 -1.7938 -1.8573 25 1 2.0897 -4.0841 -2.6992 26 1 3.7700 -4.2379 -2.0263 27 1 5.2218 -2.5959 -5.1377 28 1 4.4209 -4.2540 -5.0344 29 1 2.9428 -1.5120 -5.4102 30 1 2.1417 -3.1702 -5.3061 31 1 4.9499 -1.7969 -2.1768 32 1 3.7520 -0.6454 -2.9127 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597029708.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:01:45 Heat of formation + Delta-G solvation = 33.288561 kcal Electronic energy + Delta-G solvation = -16382.584275 eV Core-core repulsion = 13730.740953 eV Total energy + Delta-G solvation = -2651.843322 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.33572 -39.34252 -37.55536 -36.17292 -34.47324 -33.56940 -29.22519 -27.40904 -26.63583 -24.72397 -23.20255 -20.57864 -19.74397 -19.21972 -18.28546 -17.87468 -16.65823 -16.34226 -16.11892 -15.75389 -15.32273 -14.81916 -14.65788 -13.89389 -13.61872 -13.41625 -13.31221 -13.13050 -12.94892 -12.76196 -12.47442 -12.29965 -12.23381 -12.07022 -12.05789 -11.17892 -11.14405 -11.10783 -10.52408 -10.22958 -9.91749 -8.41062 -5.96734 1.37600 1.47771 1.60461 1.80050 2.05114 2.24020 2.35585 2.87335 2.99384 3.19770 3.47357 3.60062 3.69866 3.84066 3.96283 4.03263 4.32572 4.48119 4.59368 4.83700 4.86940 4.88280 4.88801 4.94163 5.07521 5.11328 5.36964 5.38149 5.46081 5.48345 6.04828 6.40893 6.98463 7.12362 7.36425 7.94369 8.63146 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.035318 B = 0.007452 C = 0.006662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.603957 B = 3756.636535 C = 4201.953968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C 0.258 3.742 3 C 0.225 3.775 4 N -0.454 5.454 5 C -0.343 4.343 6 H 0.081 0.919 7 C 0.005 3.995 8 N -0.894 5.894 9 Si 0.987 3.013 10 H -0.272 1.272 11 H -0.261 1.261 12 H -0.289 1.289 13 C 0.459 3.541 14 O -0.619 6.619 15 C -0.128 4.128 16 C -0.079 4.079 17 C -0.172 4.172 18 C -0.159 4.159 19 C -0.140 4.140 20 C -0.072 4.072 21 H 0.124 0.876 22 H 0.133 0.867 23 H 0.275 0.725 24 H 0.103 0.897 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.108 0.892 28 H 0.096 0.904 29 H 0.112 0.888 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.481 1.660 -12.655 13.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.188 5.188 2 C -0.060 4.060 3 C 0.099 3.901 4 N -0.174 5.174 5 C -0.470 4.470 6 H 0.099 0.901 7 C -0.197 4.197 8 N -0.533 5.533 9 Si 0.811 3.189 10 H -0.196 1.196 11 H -0.185 1.185 12 H -0.215 1.215 13 C 0.249 3.751 14 O -0.505 6.505 15 C -0.149 4.149 16 C -0.117 4.117 17 C -0.172 4.172 18 C -0.195 4.195 19 C -0.177 4.177 20 C -0.109 4.109 21 H 0.142 0.858 22 H 0.150 0.850 23 H 0.085 0.915 24 H 0.121 0.879 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.126 0.874 28 H 0.115 0.885 29 H 0.131 0.869 30 H 0.117 0.883 31 H 0.101 0.899 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.907 1.313 -12.317 12.989 hybrid contribution 0.312 -0.080 1.503 1.538 sum 4.219 1.234 -10.814 11.673 Atomic orbital electron populations 1.80887 1.14695 1.09717 1.13500 1.29791 0.95848 0.91451 0.88906 1.19033 0.80079 0.89633 1.01379 1.43809 1.56531 1.08255 1.08760 1.19667 1.30904 1.12419 0.84035 0.90146 1.25903 0.95183 0.96396 1.02259 1.69948 1.20330 1.23900 1.39079 0.84972 0.78080 0.78796 0.77024 1.19621 1.18543 1.21538 1.20926 0.81945 0.82760 0.89444 1.90484 1.52192 1.30366 1.77468 1.22539 1.01268 1.01475 0.89608 1.22265 1.00824 0.94823 0.93774 1.22074 1.06630 0.99739 0.88780 1.22901 0.95727 1.01428 0.99485 1.22935 0.96941 1.02999 0.94807 1.22375 0.96930 0.98834 0.92764 0.85849 0.84955 0.91517 0.87897 0.91481 0.90667 0.87369 0.88514 0.86939 0.88264 0.89939 0.88086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -24.07 18.54 20.00 0.37 -23.70 16 2 C 0.26 11.27 12.81 89.44 1.15 12.41 16 3 C 0.23 8.72 4.86 84.57 0.41 9.13 16 4 N -0.45 -21.42 2.60 -645.41 -1.68 -23.10 16 5 C -0.34 -18.13 9.32 84.04 0.78 -17.35 16 6 H 0.08 4.62 7.39 -2.91 -0.02 4.59 16 7 C 0.00 0.22 4.86 84.93 0.41 0.64 16 8 N -0.89 -45.02 9.48 21.66 0.21 -44.82 16 9 Si 0.99 40.31 29.60 68.60 2.03 42.34 16 10 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 11 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 12 H -0.29 -12.05 7.11 99.48 0.71 -11.35 16 13 C 0.46 21.22 7.10 87.66 0.62 21.84 16 14 O -0.62 -33.92 15.55 -3.08 -0.05 -33.97 16 15 C -0.13 -4.38 2.83 -10.94 -0.03 -4.41 16 16 C -0.08 -2.51 7.42 30.98 0.23 -2.28 16 17 C -0.17 -4.16 3.09 -52.33 -0.16 -4.32 16 18 C -0.16 -2.99 10.53 30.46 0.32 -2.67 16 19 C -0.14 -2.57 10.54 30.50 0.32 -2.24 16 20 C -0.07 -1.87 6.88 30.98 0.21 -1.65 16 21 H 0.12 4.89 6.46 -2.38 -0.02 4.87 16 22 H 0.13 3.75 6.02 -2.39 -0.01 3.74 16 23 H 0.27 13.27 8.31 -92.71 -0.77 12.50 16 24 H 0.10 3.46 7.20 -2.39 -0.02 3.44 16 25 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.07 2.71 7.43 -2.39 -0.02 2.70 16 27 H 0.11 1.74 8.14 -2.38 -0.02 1.72 16 28 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.11 1.69 8.14 -2.39 -0.02 1.68 16 30 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.08 2.30 8.09 -2.39 -0.02 2.28 16 32 H 0.10 2.03 7.70 -2.38 -0.02 2.01 16 Total: -1.00 -66.49 276.65 6.28 -60.21 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: 1.13 Total: 13.93 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: 4.27 Total: 9.09 kcal Atomic # 7 Polarization: -90.51 SS G_CDS: -1.10 Total: -91.62 kcal Atomic # 8 Polarization: -33.92 SS G_CDS: -0.05 Total: -33.97 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 2.03 Total: 42.34 kcal Total: -66.49 6.28 -60.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597029708.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.502 kcal (2) G-P(sol) polarization free energy of solvation -66.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds