Wall clock time and date at job start Thu Apr 9 2020 12:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47117 * 2 1 4 4 O 1.42901 * 109.47098 * 119.99865 * 2 1 3 5 5 C 1.35896 * 117.00114 * 155.08631 * 4 2 1 6 6 C 1.38732 * 120.05436 * 5.47013 * 5 4 2 7 7 C 1.38148 * 119.94278 * 180.30164 * 6 5 4 8 8 C 1.38267 * 120.05631 * 359.42690 * 7 6 5 9 9 C 1.50697 * 119.94382 * 180.29874 * 8 7 6 10 10 C 1.53000 * 109.47164 * 270.29900 * 9 8 7 11 11 C 1.50701 * 109.46732 * 180.02562 * 10 9 8 12 12 H 1.07999 * 120.00491 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99692 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99748 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00202 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47207 * 359.97438 * 15 13 11 17 17 H 1.48490 * 109.47740 * 120.00005 * 15 13 11 18 18 H 1.48499 * 109.47150 * 240.00267 * 15 13 11 19 19 C 1.38263 * 120.10696 * 0.60124 * 8 7 6 20 20 C 1.38144 * 120.05940 * 359.67284 * 19 8 7 21 21 H 1.09000 * 109.47226 * 300.00152 * 1 2 3 22 22 H 1.09002 * 109.46912 * 60.00208 * 1 2 3 23 23 H 1.08998 * 109.46855 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47226 * 239.99848 * 2 1 3 25 25 H 1.09002 * 109.47060 * 299.99702 * 3 2 1 26 26 H 1.09000 * 109.47197 * 59.99830 * 3 2 1 27 27 H 1.08998 * 109.47159 * 180.02562 * 3 2 1 28 28 H 1.08003 * 120.03227 * 0.03196 * 6 5 4 29 29 H 1.08001 * 119.97250 * 179.70365 * 7 6 5 30 30 H 1.09001 * 109.47398 * 30.30453 * 9 8 7 31 31 H 1.09010 * 109.46980 * 150.29746 * 9 8 7 32 32 H 1.09000 * 109.46938 * 299.99944 * 10 9 8 33 33 H 1.08998 * 109.47026 * 60.00262 * 10 9 8 34 34 H 0.97007 * 119.99794 * 180.02562 * 14 13 11 35 35 H 1.08004 * 119.96989 * 179.70114 * 19 8 7 36 36 H 1.07998 * 120.02708 * 179.97438 * 20 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.2474 -1.2232 1.0985 6 6 4.0364 -1.0201 -0.0244 7 6 5.2952 -1.5850 -0.0940 8 6 5.7735 -2.3424 0.9592 9 6 7.1497 -2.9519 0.8834 10 6 7.0576 -4.3421 0.2512 11 6 8.4338 -4.9517 0.1760 12 1 9.2886 -4.4024 0.5421 13 6 8.6016 -6.2108 -0.3603 14 7 7.5606 -6.8799 -0.8056 15 14 10.3072 -6.9669 -0.4529 16 1 11.3007 -6.0178 0.1107 17 1 10.3316 -8.2305 0.3266 18 1 10.6455 -7.2530 -1.8702 19 6 4.9889 -2.5467 2.0792 20 6 3.7272 -1.9887 2.1513 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 1.6768 1.9563 -0.8900 26 1 1.6767 1.9564 0.8900 27 1 3.1300 1.4425 -0.0005 28 1 3.6652 -0.4245 -0.8453 29 1 5.9079 -1.4312 -0.9700 30 1 7.7948 -2.3180 0.2751 31 1 7.5655 -3.0361 1.8876 32 1 6.4126 -4.9759 0.8596 33 1 6.6419 -4.2577 -0.7529 34 1 7.6786 -7.7659 -1.1826 35 1 5.3629 -3.1427 2.8986 36 1 3.1146 -2.1489 3.0262 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082531969.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:02:26 Heat of formation + Delta-G solvation = -40.130032 kcal Electronic energy + Delta-G solvation = -15737.048446 eV Core-core repulsion = 13185.561798 eV Total energy + Delta-G solvation = -2551.486648 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.05952 -37.73714 -33.99511 -33.08625 -31.55659 -30.58328 -28.31275 -27.41603 -24.83049 -23.09935 -21.99850 -20.90736 -19.86825 -18.11364 -16.35569 -15.81819 -15.41459 -14.88543 -14.45310 -14.32179 -13.98029 -13.29264 -13.12939 -12.87679 -12.53899 -12.51070 -12.36080 -12.11970 -11.81452 -11.51401 -11.16041 -10.95833 -10.93094 -10.53389 -10.44061 -10.42655 -9.78036 -9.48412 -9.05474 -8.61821 -8.33195 -7.57800 -5.98087 -4.01076 1.72342 1.86058 3.29784 3.32014 3.39465 3.43599 4.17501 4.47753 4.63676 4.76208 4.92393 5.17295 5.19365 5.32866 5.37432 5.41865 5.52948 5.58130 5.58590 5.76513 5.84593 5.92983 5.98274 6.07939 6.23717 6.51635 6.63540 6.70761 6.79180 6.99859 7.18959 7.23476 7.69876 7.70953 7.85537 8.02496 8.43118 9.06488 9.62944 11.12926 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.053810 B = 0.004211 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.225635 B = 6647.447341 C = 6704.424400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.076 3.924 3 C -0.179 4.179 4 O -0.316 6.316 5 C 0.107 3.893 6 C -0.208 4.208 7 C -0.083 4.083 8 C -0.092 4.092 9 C -0.076 4.076 10 C 0.028 3.972 11 C -0.521 4.521 12 H 0.056 0.944 13 C 0.056 3.944 14 N -0.894 5.894 15 Si 0.891 3.109 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.082 4.082 20 C -0.151 4.151 21 H 0.064 0.936 22 H 0.073 0.927 23 H 0.064 0.936 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.017 0.983 33 H 0.016 0.984 34 H 0.260 0.740 35 H 0.127 0.873 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.548 14.300 1.836 18.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.020 3.980 3 C -0.237 4.237 4 O -0.231 6.231 5 C 0.063 3.937 6 C -0.226 4.226 7 C -0.101 4.101 8 C -0.092 4.092 9 C -0.113 4.113 10 C -0.009 4.009 11 C -0.560 4.560 12 H 0.074 0.926 13 C -0.145 4.145 14 N -0.534 5.534 15 Si 0.719 3.281 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.100 4.100 20 C -0.170 4.170 21 H 0.083 0.917 22 H 0.092 0.908 23 H 0.083 0.917 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.140 0.860 29 H 0.140 0.860 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.036 0.964 33 H 0.035 0.965 34 H 0.069 0.931 35 H 0.145 0.855 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.737 14.143 1.911 18.478 hybrid contribution 0.934 -0.500 -0.397 1.131 sum -10.803 13.643 1.515 17.468 Atomic orbital electron populations 1.21842 0.92817 1.03095 1.02717 1.22358 0.95098 0.92562 0.88005 1.22380 1.02408 0.96156 1.02738 1.86066 1.29907 1.68712 1.38379 1.18874 0.84498 0.95170 0.95147 1.21181 0.96515 1.06403 0.98528 1.20882 0.94801 0.96190 0.98219 1.20297 0.98357 0.96991 0.93530 1.20774 0.90180 0.99177 1.01217 1.19091 0.97018 0.88946 0.95804 1.21314 0.93572 1.01017 1.40051 0.92553 1.25031 0.96707 0.97230 0.95493 1.69990 1.29285 1.12688 1.41421 0.86546 0.84654 0.79200 0.77662 1.19715 1.21017 1.21043 1.20913 0.92852 0.98062 0.98217 1.20351 0.97075 1.01065 0.98504 0.91651 0.90767 0.91666 0.90917 0.91302 0.91638 0.91672 0.85986 0.85991 0.92409 0.92325 0.96433 0.96514 0.93071 0.85506 0.85889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.56 37.16 0.36 -0.90 16 2 C 0.08 0.82 2.85 -26.73 -0.08 0.75 16 3 C -0.18 -1.66 9.17 37.16 0.34 -1.32 16 4 O -0.32 -4.50 9.80 -19.41 -0.19 -4.69 16 5 C 0.11 1.69 6.60 -39.22 -0.26 1.43 16 6 C -0.21 -3.20 8.24 -39.43 -0.32 -3.52 16 7 C -0.08 -1.43 9.69 -39.60 -0.38 -1.81 16 8 C -0.09 -1.72 5.13 -104.60 -0.54 -2.26 16 9 C -0.08 -1.60 5.28 -27.88 -0.15 -1.75 16 10 C 0.03 0.75 4.96 -27.88 -0.14 0.61 16 11 C -0.52 -14.86 9.11 -34.44 -0.31 -15.18 16 12 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 14 N -0.89 -27.21 13.29 55.43 0.74 -26.47 16 15 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 16 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 C -0.08 -1.43 9.69 -39.61 -0.38 -1.81 16 20 C -0.15 -2.43 9.99 -39.43 -0.39 -2.83 16 21 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 22 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.07 0.79 6.32 -51.93 -0.33 0.46 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.67 6.90 -51.93 -0.36 0.31 16 28 H 0.12 1.58 5.43 -52.48 -0.28 1.29 16 29 H 0.12 1.97 8.06 -52.49 -0.42 1.54 16 30 H 0.06 1.17 8.09 -51.93 -0.42 0.75 16 31 H 0.06 1.19 8.09 -51.92 -0.42 0.77 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.13 2.04 8.06 -52.48 -0.42 1.62 16 36 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 301.71 15.07 4.55 4.55 Total: -1.00 -31.11 301.71 -7.87 -38.98 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -5.58 Total: -2.03 kcal Atomic # 6 Polarization: -24.70 SS G_CDS: -2.36 Total: -27.06 kcal Atomic # 7 Polarization: -27.21 SS G_CDS: 0.74 Total: -26.47 kcal Atomic # 8 Polarization: -4.50 SS G_CDS: -0.19 Total: -4.69 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.11 -7.87 -38.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082531969.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.149 kcal (2) G-P(sol) polarization free energy of solvation -31.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds