Wall clock time and date at job start Thu Apr 9 2020 12:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38278 * 120.37472 * 2 1 4 4 N 1.31859 * 120.92316 * 180.29670 * 3 2 1 5 5 C 1.31813 * 121.79859 * 359.95090 * 4 3 2 6 6 C 1.38889 * 120.66080 * 0.04650 * 5 4 3 7 7 N 1.39713 * 120.49130 * 179.97438 * 6 5 4 8 8 C 1.46495 * 120.00120 * 0.02861 * 7 6 5 9 9 C 1.53001 * 109.47095 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.46803 * 304.99795 * 9 8 7 11 11 C 1.52991 * 109.47167 * 64.99495 * 9 8 7 12 12 C 1.52996 * 109.47130 * 185.00175 * 9 8 7 13 13 C 1.50694 * 109.47257 * 175.00090 * 12 9 8 14 14 H 1.07998 * 119.99909 * 359.97438 * 13 12 9 15 15 C 1.37882 * 120.00372 * 179.97438 * 13 12 9 16 16 N 1.31513 * 119.99537 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00211 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47079 * 60.00060 * 17 15 13 19 19 H 1.48498 * 109.46974 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47220 * 299.99849 * 17 15 13 21 21 C 1.38495 * 120.38052 * 180.27519 * 2 1 3 22 22 H 1.08998 * 109.47194 * 269.72476 * 1 2 3 23 23 H 1.09001 * 109.47042 * 29.72178 * 1 2 3 24 24 H 1.09002 * 109.47019 * 149.72740 * 1 2 3 25 25 H 1.07995 * 119.53919 * 0.27369 * 3 2 1 26 26 H 1.08002 * 119.66871 * 180.02562 * 5 4 3 27 27 H 0.96997 * 119.99419 * 180.02562 * 7 6 5 28 28 H 1.09001 * 109.47107 * 299.99449 * 8 7 6 29 29 H 1.09005 * 109.47183 * 59.99451 * 8 7 6 30 30 H 1.09003 * 109.47473 * 179.97438 * 11 9 8 31 31 H 1.08996 * 109.47448 * 300.00474 * 11 9 8 32 32 H 1.09002 * 109.47014 * 60.00429 * 11 9 8 33 33 H 1.09009 * 109.46896 * 294.99687 * 12 9 8 34 34 H 1.09005 * 109.47695 * 54.99459 * 12 9 8 35 35 H 0.97003 * 120.00130 * 179.97438 * 16 15 13 36 36 H 1.08004 * 120.81789 * 359.70522 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2062 1.1930 0.0000 4 7 3.5248 1.2056 -0.0059 5 6 4.2300 0.0920 -0.0110 6 6 3.5996 -1.1456 -0.0113 7 7 4.3506 -2.3237 -0.0173 8 6 5.8142 -2.2594 -0.0226 9 6 6.3870 -3.6781 -0.0279 10 1 5.9796 -4.2375 0.8143 11 6 6.0077 -4.3764 -1.3352 12 6 7.9108 -3.6133 0.0924 13 6 8.4652 -5.0096 0.2107 14 1 7.7974 -5.8583 0.2015 15 6 9.8250 -5.2036 0.3307 16 7 10.6382 -4.1701 0.3413 17 14 10.5122 -6.9343 0.4780 18 1 10.1431 -7.7178 -0.7282 19 1 11.9913 -6.8715 0.5934 20 1 9.9484 -7.5896 1.6856 21 6 2.2074 -1.1948 -0.0057 22 1 -0.3633 -0.0049 1.0276 23 1 -0.3633 0.8925 -0.5095 24 1 -0.3633 -0.8875 -0.5181 25 1 1.6649 2.1274 0.0045 26 1 5.3088 0.1425 -0.0153 27 1 3.9029 -3.1841 -0.0178 28 1 6.1513 -1.7278 -0.9125 29 1 6.1580 -1.7324 0.8675 30 1 6.4161 -5.3870 -1.3392 31 1 4.9220 -4.4225 -1.4209 32 1 6.4151 -3.8170 -2.1774 33 1 8.3250 -3.1318 -0.7936 34 1 8.1814 -3.0386 0.9782 35 1 11.5949 -4.3065 0.4261 36 1 1.6871 -2.1412 -0.0055 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602575813.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:03:08 Heat of formation + Delta-G solvation = 8.161200 kcal Electronic energy + Delta-G solvation = -15675.159131 eV Core-core repulsion = 13158.059299 eV Total energy + Delta-G solvation = -2517.099832 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.13223 -37.05960 -34.33327 -33.49169 -32.22710 -29.57165 -27.31667 -26.92972 -25.73803 -23.31604 -22.98475 -20.98821 -19.39910 -16.92336 -16.85287 -16.33409 -15.94189 -14.80259 -14.55641 -14.25434 -14.06518 -13.53530 -13.08771 -12.92151 -12.70889 -12.61893 -12.46552 -12.11995 -11.70650 -11.54809 -11.00117 -10.94729 -10.50542 -10.43476 -10.37301 -9.86689 -9.36911 -9.33832 -9.12935 -9.10471 -8.40199 -7.37620 -6.04728 -4.07066 1.30959 1.58090 3.29717 3.34927 3.36335 3.56347 3.99549 4.41840 4.70185 4.84701 5.00682 5.03103 5.16849 5.30997 5.42621 5.45141 5.54348 5.60416 5.74676 5.78237 5.86516 6.11235 6.18832 6.28133 6.32811 6.35560 6.69297 6.80670 6.93897 6.98340 7.37402 7.57684 7.70939 7.77974 7.93269 8.23579 8.35281 8.98292 9.56848 11.06595 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.060085 B = 0.004109 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.894639 B = 6813.306355 C = 7141.188752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.091 4.091 3 C 0.021 3.979 4 N -0.443 5.443 5 C 0.016 3.984 6 C 0.182 3.818 7 N -0.732 5.732 8 C 0.122 3.878 9 C -0.096 4.096 10 H 0.062 0.938 11 C -0.132 4.132 12 C 0.030 3.970 13 C -0.519 4.519 14 H 0.056 0.944 15 C 0.057 3.943 16 N -0.894 5.894 17 Si 0.891 3.109 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.169 4.169 22 H 0.071 0.929 23 H 0.068 0.932 24 H 0.065 0.935 25 H 0.146 0.854 26 H 0.153 0.847 27 H 0.399 0.601 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.029 0.971 32 H 0.047 0.953 33 H 0.019 0.981 34 H 0.018 0.982 35 H 0.262 0.738 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.265 5.708 -1.176 18.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.093 4.093 3 C -0.139 4.139 4 N -0.150 5.150 5 C -0.147 4.147 6 C 0.073 3.927 7 N -0.359 5.359 8 C -0.002 4.002 9 C -0.114 4.114 10 H 0.081 0.919 11 C -0.190 4.190 12 C -0.007 4.007 13 C -0.557 4.557 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.533 5.533 17 Si 0.719 3.281 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.200 4.200 22 H 0.090 0.910 23 H 0.087 0.913 24 H 0.084 0.916 25 H 0.163 0.837 26 H 0.170 0.830 27 H 0.234 0.766 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.048 0.952 32 H 0.066 0.934 33 H 0.038 0.962 34 H 0.036 0.964 35 H 0.071 0.929 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -16.386 6.574 -1.170 17.695 hybrid contribution -0.057 -2.147 0.102 2.151 sum -16.443 4.426 -1.068 17.062 Atomic orbital electron populations 1.20713 0.90738 1.02798 1.02364 1.20626 0.96849 0.93589 0.98256 1.22241 0.89869 0.96972 1.04799 1.67448 1.08302 1.30562 1.08646 1.22336 1.00224 0.86189 1.05982 1.18975 0.91341 0.88821 0.93560 1.45004 1.06244 1.04779 1.79839 1.21730 0.77646 0.99876 1.00908 1.21442 1.00351 0.92002 0.97650 0.91916 1.21727 0.97988 1.01891 0.97366 1.19079 0.86742 0.97472 0.97436 1.21140 0.91790 0.92468 1.50295 0.92617 1.25013 0.97260 0.96772 0.95359 1.69946 1.03467 1.29618 1.50307 0.86670 0.77884 0.84897 0.78622 1.20267 1.21284 1.20273 1.20877 0.91924 0.98501 1.08676 0.91043 0.91292 0.91576 0.83682 0.82969 0.76588 0.92258 0.92188 0.91682 0.95162 0.93395 0.96230 0.96375 0.92879 0.85467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.04 36.01 0.36 -0.48 16 2 C -0.09 -1.03 5.89 -104.51 -0.62 -1.65 16 3 C 0.02 0.26 10.85 -17.53 -0.19 0.07 16 4 N -0.44 -6.74 10.35 -13.08 -0.14 -6.88 16 5 C 0.02 0.24 10.49 -17.32 -0.18 0.06 16 6 C 0.18 2.56 6.68 -83.63 -0.56 2.00 16 7 N -0.73 -10.23 5.47 -58.52 -0.32 -10.55 16 8 C 0.12 1.96 4.32 -4.04 -0.02 1.95 16 9 C -0.10 -1.79 2.37 -90.63 -0.22 -2.01 16 10 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 11 C -0.13 -2.31 8.88 37.15 0.33 -1.98 16 12 C 0.03 0.73 4.45 -27.89 -0.12 0.61 16 13 C -0.52 -13.99 8.41 -34.44 -0.29 -14.28 16 14 H 0.06 1.45 7.06 -52.49 -0.37 1.08 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.89 -26.30 13.29 55.43 0.74 -25.57 16 17 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 21 C -0.17 -2.08 9.73 -39.09 -0.38 -2.46 16 22 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 23 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 24 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 25 H 0.15 1.47 8.06 -52.49 -0.42 1.04 16 26 H 0.15 2.25 6.76 -52.49 -0.35 1.89 16 27 H 0.40 5.05 7.68 -40.82 -0.31 4.74 16 28 H 0.06 0.97 7.97 -51.93 -0.41 0.55 16 29 H 0.06 0.99 7.97 -51.93 -0.41 0.58 16 30 H 0.06 1.23 6.95 -51.93 -0.36 0.87 16 31 H 0.03 0.44 7.18 -51.93 -0.37 0.06 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.02 0.50 8.14 -51.92 -0.42 0.08 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 LS Contribution 300.40 15.07 4.53 4.53 Total: -1.00 -29.65 300.40 -7.73 -37.38 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -5.53 Total: 1.57 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: -1.98 Total: -16.66 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: 0.28 Total: -42.99 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.65 -7.73 -37.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602575813.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.537 kcal (2) G-P(sol) polarization free energy of solvation -29.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds