Wall clock time and date at job start Thu Apr 9 2020 12:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30635 * 1 3 3 Si 1.86799 * 120.00180 * 2 1 4 4 H 1.48502 * 109.46771 * 274.99954 * 3 2 1 5 5 H 1.48505 * 109.47245 * 34.99621 * 3 2 1 6 6 H 1.48497 * 109.47167 * 154.99659 * 3 2 1 7 7 C 1.40130 * 119.99533 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99558 * 185.32168 * 7 2 1 9 9 C 1.46179 * 120.00197 * 5.04871 * 7 2 1 10 10 O 1.21728 * 120.00032 * 354.95077 * 9 7 2 11 11 N 1.34775 * 119.99666 * 174.95902 * 9 7 2 12 12 C 1.38890 * 119.99663 * 184.44354 * 11 9 7 13 13 C 1.39004 * 120.18046 * 324.61555 * 12 11 9 14 14 C 1.37972 * 120.06035 * 180.02562 * 13 12 11 15 15 C 1.38611 * 120.43240 * 359.97384 * 14 13 12 16 16 C 1.37823 * 120.36200 * 0.02562 * 15 14 13 17 17 C 1.39715 * 119.92181 * 359.74197 * 16 15 14 18 18 C 1.47376 * 120.20546 * 180.25321 * 17 16 15 19 19 O 1.21517 * 119.99664 * 185.12665 * 18 17 16 20 20 O 1.34754 * 120.00475 * 5.13295 * 18 17 16 21 21 H 0.97009 * 119.99894 * 0.02562 * 1 2 3 22 22 H 0.97003 * 120.00446 * 4.44176 * 11 9 7 23 23 H 1.07997 * 119.96399 * 0.02562 * 13 12 11 24 24 H 1.07999 * 119.78539 * 179.97438 * 14 13 12 25 25 H 1.07998 * 119.81861 * 179.97438 * 15 14 13 26 26 H 1.07994 * 120.03980 * 180.02562 * 16 15 14 27 27 H 0.96694 * 117.00064 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.3822 2.1073 -1.3948 5 1 1.4947 2.6199 0.8030 6 1 3.5867 1.4119 0.5918 7 6 2.0069 -1.2136 0.0005 8 1 3.0835 -1.2156 0.0873 9 6 1.2802 -2.4771 -0.1103 10 8 0.0629 -2.4812 -0.1105 11 7 1.9580 -3.6376 -0.2121 12 6 1.2707 -4.8281 -0.4101 13 6 0.0295 -5.0256 0.1838 14 6 -0.6509 -6.2094 -0.0141 15 6 -0.1055 -7.2090 -0.8045 16 6 1.1238 -7.0319 -1.4018 17 6 1.8236 -5.8371 -1.2154 18 6 3.1361 -5.6389 -1.8557 19 8 3.7836 -4.6387 -1.6172 20 8 3.6182 -6.5668 -2.7058 21 1 -0.4850 0.8401 -0.0004 22 1 2.9258 -3.6413 -0.1472 23 1 -0.4025 -4.2515 0.8007 24 1 -1.6148 -6.3583 0.4498 25 1 -0.6465 -8.1319 -0.9524 26 1 1.5437 -7.8140 -2.0169 27 1 4.4831 -6.3926 -3.1014 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000396331.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:03:04 Heat of formation + Delta-G solvation = -101.231843 kcal Electronic energy + Delta-G solvation = -16005.902909 eV Core-core repulsion = 13114.674588 eV Total energy + Delta-G solvation = -2891.228321 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 235.068 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.25385 -38.66173 -36.95556 -35.80978 -33.45740 -32.47736 -30.86999 -29.14720 -26.33228 -24.10151 -22.48655 -20.95487 -19.81916 -17.77117 -17.47283 -16.91459 -16.19517 -15.54807 -15.32362 -14.54934 -14.34750 -13.95344 -13.54762 -13.06271 -12.73025 -12.39022 -11.98195 -11.64908 -11.34433 -11.28665 -11.11328 -10.99598 -10.62913 -10.35482 -10.12938 -9.38099 -8.91837 -8.63228 -7.78085 -7.24797 -6.37758 -4.82351 1.15912 1.91705 2.94782 3.07828 3.15058 3.19326 3.34026 3.98886 4.16436 4.47305 4.58498 5.21188 5.33967 5.46190 5.59994 5.83360 5.94655 6.08657 6.38788 6.62125 6.69833 6.87795 6.96024 7.24538 7.30147 7.75572 7.97856 8.15736 8.21576 8.83641 9.18235 10.33274 10.53057 Molecular weight = 235.07amu Principal moments of inertia in cm(-1) A = 0.031261 B = 0.007795 C = 0.006382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.477835 B = 3591.330670 C = 4386.118188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.086 3.914 3 Si 0.915 3.085 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.530 4.530 8 H 0.075 0.925 9 C 0.539 3.461 10 O -0.561 6.561 11 N -0.682 5.682 12 C 0.261 3.739 13 C -0.146 4.146 14 C -0.065 4.065 15 C -0.185 4.185 16 C -0.043 4.043 17 C -0.203 4.203 18 C 0.530 3.470 19 O -0.516 6.516 20 O -0.518 6.518 21 H 0.272 0.728 22 H 0.409 0.591 23 H 0.152 0.848 24 H 0.123 0.877 25 H 0.120 0.880 26 H 0.129 0.871 27 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.535 -10.933 -1.986 11.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C -0.135 4.135 3 Si 0.739 3.261 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.566 4.566 8 H 0.093 0.907 9 C 0.346 3.654 10 O -0.443 6.443 11 N -0.327 5.327 12 C 0.157 3.843 13 C -0.167 4.167 14 C -0.084 4.084 15 C -0.204 4.204 16 C -0.062 4.062 17 C -0.208 4.208 18 C 0.376 3.624 19 O -0.406 6.406 20 O -0.330 6.330 21 H 0.083 0.917 22 H 0.248 0.752 23 H 0.170 0.830 24 H 0.141 0.859 25 H 0.138 0.862 26 H 0.147 0.853 27 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 2.350 -10.460 -1.728 10.859 hybrid contribution 1.471 0.882 -0.396 1.760 sum 3.821 -9.578 -2.124 10.529 Atomic orbital electron populations 1.69990 1.07201 1.27876 1.33540 1.25762 0.94722 1.00593 0.92468 0.86229 0.80256 0.80728 0.78897 1.19595 1.20230 1.18627 1.20893 0.94411 0.88935 1.52357 0.90726 1.18472 0.87411 0.82137 0.77341 1.90606 1.13633 1.85809 1.54288 1.44528 1.11565 1.04691 1.71886 1.17997 0.92196 0.85436 0.88689 1.21538 0.95091 0.98023 1.02024 1.21270 0.98715 0.92625 0.95770 1.20862 0.96789 1.00120 1.02649 1.21055 0.93748 0.95091 0.96292 1.18792 0.95655 0.99389 1.07012 1.20859 0.85901 0.79634 0.75966 1.90783 1.59650 1.28883 1.61294 1.84566 1.40654 1.49761 1.57974 0.91690 0.75163 0.83023 0.85936 0.86182 0.85339 0.73509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -22.06 11.84 55.55 0.66 -21.40 15 2 C 0.09 2.35 5.50 -17.35 -0.10 2.26 15 3 Si 0.91 19.92 29.56 -169.99 -5.03 14.90 15 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 15 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 15 6 H -0.26 -5.55 7.11 56.52 0.40 -5.15 15 7 C -0.53 -15.01 9.53 -35.69 -0.34 -15.35 15 8 H 0.07 1.97 7.85 -52.48 -0.41 1.56 15 9 C 0.54 15.38 7.57 -13.07 -0.10 15.28 15 10 O -0.56 -17.39 12.47 5.16 0.06 -17.33 15 11 N -0.68 -16.55 4.65 -11.01 -0.05 -16.60 15 12 C 0.26 5.67 6.30 -83.55 -0.53 5.15 15 13 C -0.15 -3.02 8.67 -39.39 -0.34 -3.36 15 14 C -0.06 -1.05 10.03 -39.54 -0.40 -1.45 15 15 C -0.18 -2.66 10.02 -39.60 -0.40 -3.06 15 16 C -0.04 -0.66 9.61 -39.18 -0.38 -1.03 15 17 C -0.20 -3.76 5.89 -104.80 -0.62 -4.38 15 18 C 0.53 9.27 8.25 34.45 0.28 9.56 15 19 O -0.52 -10.42 14.69 -19.28 -0.28 -10.70 15 20 O -0.52 -6.67 12.69 -40.64 -0.52 -7.19 15 21 H 0.27 7.15 8.29 -40.82 -0.34 6.81 15 22 H 0.41 9.44 6.33 -40.82 -0.26 9.18 15 23 H 0.15 3.54 6.24 -52.49 -0.33 3.21 15 24 H 0.12 1.64 8.06 -52.49 -0.42 1.22 15 25 H 0.12 1.33 8.06 -52.49 -0.42 0.91 15 26 H 0.13 1.61 7.62 -52.49 -0.40 1.21 15 27 H 0.41 3.30 9.11 45.56 0.42 3.71 15 LS Contribution 250.17 15.07 3.77 3.77 Total: -1.00 -33.88 250.17 -5.25 -39.13 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -0.96 Total: 11.82 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: -2.91 Total: 3.61 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.61 Total: -38.01 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -0.73 Total: -35.22 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.03 Total: 14.90 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -33.88 -5.25 -39.13 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000396331.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.100 kcal (2) G-P(sol) polarization free energy of solvation -33.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds