Wall clock time and date at job start Thu Apr 9 2020 12:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35900 * 117.00468 * 2 1 4 4 C 1.38723 * 120.05337 * 179.97438 * 3 2 1 5 5 C 1.38147 * 119.94172 * 180.02562 * 4 3 2 6 6 C 1.38266 * 120.05481 * 0.02878 * 5 4 3 7 7 C 1.50705 * 119.94189 * 179.97438 * 6 5 4 8 8 N 1.46498 * 109.47391 * 89.99522 * 7 6 5 9 9 C 1.34779 * 119.99811 * 179.97438 * 8 7 6 10 10 O 1.21692 * 119.99931 * 359.97438 * 9 8 7 11 11 C 1.46375 * 119.99917 * 179.97438 * 9 8 7 12 12 H 1.07999 * 120.00065 * 353.93908 * 11 9 8 13 13 C 1.40044 * 120.00144 * 173.93744 * 11 9 8 14 14 N 1.30675 * 119.99855 * 6.14912 * 13 11 9 15 15 Si 1.86801 * 120.00097 * 186.15103 * 13 11 9 16 16 H 1.48504 * 109.46864 * 94.98526 * 15 13 11 17 17 H 1.48499 * 109.46977 * 214.98357 * 15 13 11 18 18 H 1.48497 * 109.47248 * 334.98541 * 15 13 11 19 19 C 1.38264 * 120.11041 * 0.24228 * 6 5 4 20 20 C 1.38142 * 120.05453 * 359.45968 * 19 6 5 21 21 H 1.08994 * 109.47778 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47260 * 300.00712 * 1 2 3 23 23 H 1.09010 * 109.46880 * 60.00059 * 1 2 3 24 24 H 1.07997 * 120.03026 * 359.97438 * 4 3 2 25 25 H 1.08000 * 119.97451 * 179.97438 * 5 4 3 26 26 H 1.09001 * 109.46292 * 209.99521 * 7 6 5 27 27 H 1.09001 * 109.47049 * 329.98904 * 7 6 5 28 28 H 0.97003 * 119.99910 * 359.97438 * 8 7 6 29 29 H 0.97002 * 120.00207 * 179.97438 * 14 13 11 30 30 H 1.08003 * 119.96783 * 179.71081 * 19 6 5 31 31 H 1.08003 * 120.02742 * 180.24892 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 3.4313 1.2846 0.0005 5 6 4.0562 2.5167 0.0011 6 6 3.3021 3.6756 0.0017 7 6 3.9864 5.0183 0.0028 8 7 4.2087 5.4544 -1.3780 9 6 4.8101 6.6354 -1.6231 10 8 5.1679 7.3397 -0.6975 11 6 5.0327 7.0709 -3.0027 12 1 4.8053 6.4054 -3.8224 13 6 5.5405 8.3504 -3.2599 14 7 5.9282 9.1105 -2.2701 15 14 5.6634 8.9707 -5.0176 16 1 4.4558 9.7701 -5.3460 17 1 6.8731 9.8203 -5.1592 18 1 5.7591 7.8148 -5.9449 19 6 1.9213 3.6046 0.0068 20 6 1.2917 2.3750 0.0001 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8901 24 1 4.0208 0.3797 0.0014 25 1 5.1347 2.5747 0.0019 26 1 3.3582 5.7457 0.5170 27 1 4.9441 4.9375 0.5171 28 1 3.9231 4.8931 -2.1158 29 1 6.2803 9.9967 -2.4482 30 1 1.3345 4.5113 0.0120 31 1 0.2131 2.3202 0.0000 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000060967.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:03:28 Heat of formation + Delta-G solvation = -81.715611 kcal Electronic energy + Delta-G solvation = -15526.976179 eV Core-core repulsion = 12772.427240 eV Total energy + Delta-G solvation = -2754.548939 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.12868 -39.52666 -38.40770 -35.22698 -34.42706 -32.10649 -31.53839 -28.89098 -28.07852 -25.99101 -23.60521 -22.32246 -21.62873 -19.37842 -19.04364 -17.49406 -17.22694 -16.66435 -16.56665 -16.02358 -15.67654 -15.40688 -14.96751 -14.56662 -14.34136 -14.24472 -13.57483 -13.23774 -13.09521 -12.79794 -12.71389 -12.62367 -12.33390 -11.99726 -11.94846 -11.73446 -10.92887 -9.98997 -9.94042 -9.48999 -9.12648 -8.28903 -6.85164 0.33765 0.37414 1.41168 1.42278 1.58539 2.25754 2.37222 2.47108 2.67721 3.37672 3.60143 3.82141 3.85308 3.95671 4.25077 4.40933 4.42393 4.45435 4.61698 4.74275 4.78755 4.81323 5.08333 5.24626 5.32643 5.34189 5.69681 5.75085 5.87863 6.20929 6.27101 6.43678 6.86974 7.54160 8.48371 8.67060 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.047638 B = 0.004549 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.628930 B = 6153.958765 C = 6384.292625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.332 6.332 3 C 0.122 3.878 4 C -0.157 4.157 5 C -0.068 4.068 6 C -0.140 4.140 7 C 0.180 3.820 8 N -0.749 5.749 9 C 0.537 3.463 10 O -0.633 6.633 11 C -0.574 4.574 12 H 0.087 0.913 13 C 0.029 3.971 14 N -0.822 5.822 15 Si 1.000 3.000 16 H -0.263 1.263 17 H -0.272 1.272 18 H -0.249 1.249 19 C -0.069 4.069 20 C -0.205 4.205 21 H 0.121 0.879 22 H 0.065 0.935 23 H 0.063 0.937 24 H 0.146 0.854 25 H 0.134 0.866 26 H 0.041 0.959 27 H 0.042 0.958 28 H 0.393 0.607 29 H 0.275 0.725 30 H 0.130 0.870 31 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.899 -16.558 1.010 19.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.246 6.246 3 C 0.076 3.924 4 C -0.176 4.176 5 C -0.086 4.086 6 C -0.141 4.141 7 C 0.055 3.945 8 N -0.404 5.404 9 C 0.341 3.659 10 O -0.521 6.521 11 C -0.611 4.611 12 H 0.105 0.895 13 C -0.186 4.186 14 N -0.451 5.451 15 Si 0.819 3.181 16 H -0.187 1.187 17 H -0.197 1.197 18 H -0.172 1.172 19 C -0.087 4.087 20 C -0.223 4.223 21 H 0.139 0.861 22 H 0.083 0.917 23 H 0.082 0.918 24 H 0.163 0.837 25 H 0.152 0.848 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.227 0.773 29 H 0.085 0.915 30 H 0.147 0.853 31 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -10.499 -16.104 1.781 19.307 hybrid contribution -0.091 0.498 -0.636 0.813 sum -10.591 -15.606 1.145 18.895 Atomic orbital electron populations 1.23362 0.76441 1.05648 1.02292 1.86045 1.23488 1.26454 1.88566 1.19182 0.92544 0.84684 0.95976 1.20574 0.91866 0.98580 1.06574 1.20998 1.00384 0.90859 0.96370 1.19794 0.94377 0.93992 1.05896 1.19693 0.97816 0.91735 0.85208 1.45899 1.65761 1.22197 1.06495 1.18653 0.77059 0.79532 0.90624 1.90550 1.57245 1.56449 1.47823 1.21427 1.46460 1.01638 0.91556 0.89517 1.26990 0.91552 0.96224 1.03865 1.70194 1.30668 1.08821 1.35450 0.84982 0.78549 0.78856 0.75727 1.18729 1.19667 1.17193 1.21006 0.93450 0.98116 0.96165 1.21406 1.01209 0.91308 1.08397 0.86114 0.91682 0.91829 0.83653 0.84841 0.94074 0.94007 0.77326 0.91509 0.85253 0.82907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.32 16 2 O -0.33 -6.93 10.50 -92.42 -0.97 -7.90 16 3 C 0.12 2.90 6.69 22.50 0.15 3.05 16 4 C -0.16 -3.90 9.99 22.36 0.22 -3.67 16 5 C -0.07 -1.90 9.69 22.25 0.22 -1.68 16 6 C -0.14 -4.42 5.25 -19.85 -0.10 -4.52 16 7 C 0.18 7.33 5.80 85.63 0.50 7.83 16 8 N -0.75 -35.04 5.54 -471.13 -2.61 -37.65 16 9 C 0.54 31.98 7.74 86.36 0.67 32.65 16 10 O -0.63 -43.40 15.05 -4.32 -0.07 -43.46 16 11 C -0.57 -33.17 9.53 24.83 0.24 -32.94 16 12 H 0.09 4.51 7.85 -2.91 -0.02 4.48 16 13 C 0.03 1.62 5.49 85.30 0.47 2.09 16 14 N -0.82 -50.95 11.85 21.83 0.26 -50.70 16 15 Si 1.00 41.31 29.56 68.60 2.03 43.34 16 16 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 17 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 18 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 19 C -0.07 -1.89 9.69 22.25 0.22 -1.67 16 20 C -0.20 -4.68 9.04 22.36 0.20 -4.47 16 21 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 22 H 0.06 0.68 7.66 -2.39 -0.02 0.66 16 23 H 0.06 0.69 7.66 -2.38 -0.02 0.67 16 24 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 25 H 0.13 3.58 8.06 -2.91 -0.02 3.55 16 26 H 0.04 1.78 8.08 -2.39 -0.02 1.76 16 27 H 0.04 1.80 8.08 -2.39 -0.02 1.79 16 28 H 0.39 16.29 8.44 -92.71 -0.78 15.51 16 29 H 0.28 15.37 8.29 -92.71 -0.77 14.60 16 30 H 0.13 3.40 8.06 -2.91 -0.02 3.38 16 31 H 0.15 2.56 6.30 -2.91 -0.02 2.55 16 Total: -1.00 -77.04 277.25 2.89 -74.15 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: 0.36 Total: 24.25 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: 3.89 Total: -2.03 kcal Atomic # 7 Polarization: -86.00 SS G_CDS: -2.35 Total: -88.35 kcal Atomic # 8 Polarization: -50.33 SS G_CDS: -1.04 Total: -51.36 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -77.04 2.89 -74.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000060967.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.565 kcal (2) G-P(sol) polarization free energy of solvation -77.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds