Wall clock time and date at job start Thu Apr 9 2020 12:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46906 * 110.99749 * 2 1 4 4 C 1.46901 * 111.00176 * 123.95568 * 2 1 3 5 5 C 1.52998 * 109.47003 * 170.00318 * 4 2 1 6 6 N 1.46500 * 109.47095 * 179.97438 * 5 4 2 7 7 C 1.38371 * 120.00180 * 179.97438 * 6 5 4 8 8 C 1.39706 * 119.42981 * 0.02562 * 7 6 5 9 9 C 1.36561 * 119.49486 * 179.97438 * 8 7 6 10 10 C 1.41321 * 118.40694 * 0.02562 * 9 8 7 11 11 C 1.41203 * 120.57072 * 179.97438 * 10 9 8 12 12 H 1.07995 * 120.00048 * 24.92546 * 11 10 9 13 13 C 1.39869 * 119.99762 * 204.93206 * 11 10 9 14 14 N 1.30895 * 120.00558 * 17.36819 * 13 11 10 15 15 Si 1.86804 * 119.99963 * 197.37246 * 13 11 10 16 16 H 1.48500 * 109.46697 * 265.17965 * 15 13 11 17 17 H 1.48506 * 109.47008 * 25.17238 * 15 13 11 18 18 H 1.48493 * 109.47415 * 145.17642 * 15 13 11 19 19 C 1.40755 * 118.85846 * 0.24620 * 10 9 8 20 20 N 1.31483 * 120.36796 * 359.48211 * 19 10 9 21 21 H 1.08996 * 109.46916 * 296.04163 * 1 2 3 22 22 H 1.08991 * 109.47196 * 56.04393 * 1 2 3 23 23 H 1.09005 * 109.46732 * 176.04380 * 1 2 3 24 24 H 1.09002 * 109.47085 * 183.95143 * 3 2 1 25 25 H 1.08997 * 109.46980 * 303.95786 * 3 2 1 26 26 H 1.09010 * 109.46622 * 63.95619 * 3 2 1 27 27 H 1.08994 * 109.47223 * 49.99948 * 4 2 1 28 28 H 1.09003 * 109.46973 * 289.99925 * 4 2 1 29 29 H 1.09001 * 109.47239 * 60.00093 * 5 4 2 30 30 H 1.08998 * 109.47503 * 300.00031 * 5 4 2 31 31 H 0.96995 * 120.00079 * 359.97438 * 6 5 4 32 32 H 1.08010 * 120.25712 * 359.97438 * 8 7 6 33 33 H 1.08003 * 120.79733 * 180.02562 * 9 8 7 34 34 H 0.96997 * 120.00583 * 179.97438 * 14 13 11 35 35 H 1.08004 * 119.81344 * 179.75019 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 3.5045 -0.9553 0.9703 6 7 4.0297 -1.7187 2.1050 7 6 5.3793 -2.0161 2.1736 8 6 6.2305 -1.5821 1.1543 9 6 7.5628 -1.8744 1.2209 10 6 8.0345 -2.6130 2.3296 11 6 9.4031 -2.9411 2.4442 12 1 10.1473 -2.3324 1.9524 13 6 9.7948 -4.0545 3.1947 14 7 8.9188 -4.9768 3.5036 15 14 11.5682 -4.2252 3.7564 16 1 12.3181 -5.0574 2.7815 17 1 12.1920 -2.8803 3.8422 18 1 11.6043 -4.8737 5.0918 19 6 7.1155 -3.0210 3.3146 20 7 5.8428 -2.7093 3.2063 21 1 -0.3633 0.4512 0.9233 22 1 -0.3633 0.5740 -0.8523 23 1 -0.3633 -1.0253 -0.0709 24 1 3.0828 1.3433 -0.0708 25 1 1.5897 1.9164 -0.8524 26 1 1.7043 1.8724 0.9234 27 1 1.5091 -1.7406 1.1756 28 1 1.7976 -0.2248 2.0628 29 1 3.9909 0.0194 0.9323 30 1 3.7025 -1.4964 0.0451 31 1 3.4313 -2.0156 2.8083 32 1 5.8379 -1.0196 0.3200 33 1 8.2398 -1.5490 0.4449 34 1 9.1906 -5.7491 4.0238 35 1 7.4586 -3.5897 4.1664 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161663457.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:03:04 Heat of formation + Delta-G solvation = 37.581578 kcal Electronic energy + Delta-G solvation = -15862.489473 eV Core-core repulsion = 13281.239493 eV Total energy + Delta-G solvation = -2581.249979 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.62893 -37.69676 -34.99872 -33.33841 -31.03001 -29.67642 -28.04951 -27.69786 -24.92304 -23.59552 -22.04232 -20.80795 -20.53976 -17.29623 -16.46883 -15.86969 -15.68876 -15.20423 -14.78734 -14.39098 -14.05785 -13.65862 -13.13530 -12.80097 -12.59998 -12.45394 -12.01325 -11.87649 -11.75754 -11.47111 -11.32664 -11.13620 -10.99909 -10.78476 -10.67793 -9.99807 -9.35128 -8.68675 -8.53443 -8.26307 -7.84895 -6.75354 -6.61807 -4.14412 2.84418 2.96042 3.12400 3.17029 3.30010 3.61594 3.99898 4.44763 4.75960 4.92230 5.00112 5.14257 5.21336 5.40957 5.47566 5.54664 5.66411 5.77894 5.79625 6.05030 6.13080 6.21248 6.41685 6.71590 6.82020 6.84901 6.88680 7.22944 7.39193 7.44615 7.61184 8.12153 8.22466 8.51780 8.58775 8.90982 8.96105 9.82836 10.28584 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.076491 B = 0.004251 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.968605 B = 6584.838764 C = 6824.874621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.545 5.545 3 C 0.019 3.981 4 C 0.046 3.954 5 C 0.148 3.852 6 N -0.746 5.746 7 C 0.275 3.725 8 C -0.198 4.198 9 C -0.156 4.156 10 C 0.026 3.974 11 C -0.459 4.459 12 H 0.076 0.924 13 C 0.073 3.927 14 N -0.806 5.806 15 Si 0.908 3.092 16 H -0.272 1.272 17 H -0.262 1.262 18 H -0.276 1.276 19 C 0.080 3.920 20 N -0.526 5.526 21 H 0.024 0.976 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.025 0.975 27 H 0.079 0.921 28 H 0.038 0.962 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.388 0.612 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.280 0.720 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.452 7.348 -3.811 13.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.269 5.269 3 C -0.129 4.129 4 C -0.083 4.083 5 C 0.021 3.979 6 N -0.386 5.386 7 C 0.046 3.954 8 C -0.223 4.223 9 C -0.183 4.183 10 C 0.021 3.979 11 C -0.490 4.490 12 H 0.094 0.906 13 C -0.143 4.143 14 N -0.433 5.433 15 Si 0.733 3.267 16 H -0.198 1.198 17 H -0.186 1.186 18 H -0.201 1.201 19 C -0.081 4.081 20 N -0.241 5.241 21 H 0.043 0.957 22 H 0.087 0.913 23 H 0.087 0.913 24 H 0.093 0.907 25 H 0.086 0.914 26 H 0.044 0.956 27 H 0.097 0.903 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.221 0.779 32 H 0.115 0.885 33 H 0.119 0.881 34 H 0.091 0.909 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -10.877 6.736 -3.673 13.311 hybrid contribution 0.878 0.354 0.515 1.077 sum -9.999 7.090 -3.158 12.658 Atomic orbital electron populations 1.22377 0.87172 1.02332 1.00383 1.61864 1.07850 1.14099 1.43085 1.22491 1.01570 0.88530 1.00325 1.22263 0.95984 0.98577 0.91427 1.20915 0.91298 0.95524 0.90118 1.43511 1.05383 1.63920 1.25783 1.17779 0.84413 0.99553 0.93664 1.20613 0.94596 1.07336 0.99713 1.20926 0.93883 1.05221 0.98284 1.18370 0.94925 0.93305 0.91280 1.19293 0.92239 1.09566 1.27902 0.90611 1.25848 0.99617 0.94574 0.94217 1.69789 1.36185 1.07290 1.30009 0.86309 0.82471 0.79334 0.78631 1.19761 1.18586 1.20111 1.22776 0.85985 1.00420 0.98928 1.66764 1.18490 1.15252 1.23632 0.95722 0.91328 0.91280 0.90658 0.91429 0.95601 0.90280 0.94355 0.93370 0.92410 0.77887 0.88507 0.88056 0.90892 0.82991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.57 60.07 0.57 0.80 16 2 N -0.54 -6.15 5.02 -251.25 -1.26 -7.41 16 3 C 0.02 0.19 9.32 60.07 0.56 0.75 16 4 C 0.05 0.56 5.07 -3.82 -0.02 0.54 16 5 C 0.15 2.26 4.79 -4.04 -0.02 2.24 16 6 N -0.75 -14.08 5.70 -60.36 -0.34 -14.42 16 7 C 0.28 6.49 7.64 -155.13 -1.19 5.30 16 8 C -0.20 -4.60 9.24 -39.64 -0.37 -4.96 16 9 C -0.16 -3.90 9.88 -39.02 -0.39 -4.28 16 10 C 0.03 0.71 5.58 -106.65 -0.60 0.12 16 11 C -0.46 -12.28 9.07 -37.85 -0.34 -12.62 16 12 H 0.08 1.94 7.90 -52.49 -0.41 1.53 16 13 C 0.07 1.86 5.15 -17.34 -0.09 1.77 16 14 N -0.81 -21.19 10.96 55.54 0.61 -20.58 16 15 Si 0.91 18.86 29.59 -169.99 -5.03 13.83 16 16 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 17 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 18 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 19 C 0.08 2.20 9.89 -16.75 -0.17 2.03 16 20 N -0.53 -13.71 10.37 -11.79 -0.12 -13.84 16 21 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 22 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 23 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 24 H 0.07 0.80 6.47 -51.93 -0.34 0.46 16 25 H 0.07 0.58 8.12 -51.93 -0.42 0.15 16 26 H 0.03 0.25 8.14 -51.92 -0.42 -0.17 16 27 H 0.08 0.94 8.06 -51.93 -0.42 0.53 16 28 H 0.04 0.46 8.12 -51.93 -0.42 0.04 16 29 H 0.05 0.74 6.31 -51.93 -0.33 0.41 16 30 H 0.06 0.94 7.90 -51.93 -0.41 0.53 16 31 H 0.39 6.87 8.59 -40.82 -0.35 6.52 16 32 H 0.10 1.97 6.64 -52.48 -0.35 1.62 16 33 H 0.10 2.32 8.06 -52.48 -0.42 1.90 16 34 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 35 H 0.15 4.26 6.16 -52.48 -0.32 3.94 16 LS Contribution 291.34 15.07 4.39 4.39 Total: -1.00 -29.02 291.34 -8.81 -37.84 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -5.02 Total: 8.50 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -2.03 Total: -8.30 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: -1.12 Total: -56.25 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.02 -8.81 -37.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161663457.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.419 kcal (2) G-P(sol) polarization free energy of solvation -29.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds