Wall clock time and date at job start Thu Apr 9 2020 12:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46906 * 110.99749 * 2 1 4 4 C 1.46901 * 111.00176 * 123.95568 * 2 1 3 5 5 C 1.52998 * 109.47003 * 170.00318 * 4 2 1 6 6 N 1.46500 * 109.47095 * 179.97438 * 5 4 2 7 7 C 1.38371 * 120.00180 * 179.97438 * 6 5 4 8 8 C 1.39706 * 119.42981 * 0.02562 * 7 6 5 9 9 C 1.36561 * 119.49486 * 179.97438 * 8 7 6 10 10 C 1.41321 * 118.40694 * 0.02562 * 9 8 7 11 11 C 1.41203 * 120.57072 * 179.97438 * 10 9 8 12 12 H 1.07995 * 120.00048 * 24.92546 * 11 10 9 13 13 C 1.39869 * 119.99762 * 204.93206 * 11 10 9 14 14 N 1.30895 * 120.00558 * 17.36819 * 13 11 10 15 15 Si 1.86804 * 119.99963 * 197.37246 * 13 11 10 16 16 H 1.48500 * 109.46697 * 265.17965 * 15 13 11 17 17 H 1.48506 * 109.47008 * 25.17238 * 15 13 11 18 18 H 1.48493 * 109.47415 * 145.17642 * 15 13 11 19 19 C 1.40755 * 118.85846 * 0.24620 * 10 9 8 20 20 N 1.31483 * 120.36796 * 359.48211 * 19 10 9 21 21 H 1.08996 * 109.46916 * 296.04163 * 1 2 3 22 22 H 1.08991 * 109.47196 * 56.04393 * 1 2 3 23 23 H 1.09005 * 109.46732 * 176.04380 * 1 2 3 24 24 H 1.09002 * 109.47085 * 183.95143 * 3 2 1 25 25 H 1.08997 * 109.46980 * 303.95786 * 3 2 1 26 26 H 1.09010 * 109.46622 * 63.95619 * 3 2 1 27 27 H 1.08994 * 109.47223 * 49.99948 * 4 2 1 28 28 H 1.09003 * 109.46973 * 289.99925 * 4 2 1 29 29 H 1.09001 * 109.47239 * 60.00093 * 5 4 2 30 30 H 1.08998 * 109.47503 * 300.00031 * 5 4 2 31 31 H 0.96995 * 120.00079 * 359.97438 * 6 5 4 32 32 H 1.08010 * 120.25712 * 359.97438 * 8 7 6 33 33 H 1.08003 * 120.79733 * 180.02562 * 9 8 7 34 34 H 0.96997 * 120.00583 * 179.97438 * 14 13 11 35 35 H 1.08004 * 119.81344 * 179.75019 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 3.5045 -0.9553 0.9703 6 7 4.0297 -1.7187 2.1050 7 6 5.3793 -2.0161 2.1736 8 6 6.2305 -1.5821 1.1543 9 6 7.5628 -1.8744 1.2209 10 6 8.0345 -2.6130 2.3296 11 6 9.4031 -2.9411 2.4442 12 1 10.1473 -2.3324 1.9524 13 6 9.7948 -4.0545 3.1947 14 7 8.9188 -4.9768 3.5036 15 14 11.5682 -4.2252 3.7564 16 1 12.3181 -5.0574 2.7815 17 1 12.1920 -2.8803 3.8422 18 1 11.6043 -4.8737 5.0918 19 6 7.1155 -3.0210 3.3146 20 7 5.8428 -2.7093 3.2063 21 1 -0.3633 0.4512 0.9233 22 1 -0.3633 0.5740 -0.8523 23 1 -0.3633 -1.0253 -0.0709 24 1 3.0828 1.3433 -0.0708 25 1 1.5897 1.9164 -0.8524 26 1 1.7043 1.8724 0.9234 27 1 1.5091 -1.7406 1.1756 28 1 1.7976 -0.2248 2.0628 29 1 3.9909 0.0194 0.9323 30 1 3.7025 -1.4964 0.0451 31 1 3.4313 -2.0156 2.8083 32 1 5.8379 -1.0196 0.3200 33 1 8.2398 -1.5490 0.4449 34 1 9.1906 -5.7491 4.0238 35 1 7.4586 -3.5897 4.1664 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161663457.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:03:03 Heat of formation + Delta-G solvation = 18.180422 kcal Electronic energy + Delta-G solvation = -15863.330770 eV Core-core repulsion = 13281.239493 eV Total energy + Delta-G solvation = -2582.091277 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.43343 -38.75301 -36.60145 -35.10590 -32.96639 -31.25965 -29.57920 -28.47956 -26.61414 -24.96896 -23.70203 -22.48031 -21.87549 -19.24044 -18.06647 -17.52569 -16.73347 -16.63839 -16.02079 -15.69745 -15.44010 -15.22754 -14.65170 -14.47153 -14.19991 -13.67978 -13.34862 -13.25135 -12.90422 -12.85483 -12.69715 -12.60307 -12.45357 -12.34576 -12.12480 -11.77970 -11.18723 -10.46784 -10.19035 -9.81758 -9.36546 -8.64068 -8.45239 -6.12726 0.95399 1.04240 1.42965 1.54787 1.59779 2.26165 2.43639 2.83871 3.26856 3.79066 3.90650 4.08481 4.27637 4.30230 4.45385 4.53413 4.56364 4.66542 4.69990 4.79262 4.87309 4.98059 5.01393 5.02686 5.07627 5.29483 5.45185 5.51689 5.73034 5.98256 6.05689 6.14616 6.36758 6.68698 6.75806 6.94592 7.13119 7.89045 8.41807 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.076491 B = 0.004251 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.968605 B = 6584.838764 C = 6824.874621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.558 5.558 3 C 0.018 3.982 4 C 0.056 3.944 5 C 0.148 3.852 6 N -0.737 5.737 7 C 0.278 3.722 8 C -0.198 4.198 9 C -0.159 4.159 10 C -0.005 4.005 11 C -0.492 4.492 12 H 0.078 0.922 13 C 0.032 3.968 14 N -0.839 5.839 15 Si 0.985 3.015 16 H -0.264 1.264 17 H -0.258 1.258 18 H -0.269 1.269 19 C 0.054 3.946 20 N -0.546 5.546 21 H 0.030 0.970 22 H 0.082 0.918 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.083 0.917 26 H 0.029 0.971 27 H 0.083 0.917 28 H 0.043 0.957 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.394 0.606 32 H 0.129 0.871 33 H 0.118 0.882 34 H 0.287 0.713 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.049 8.271 -4.613 14.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.283 5.283 3 C -0.130 4.130 4 C -0.072 4.072 5 C 0.023 3.977 6 N -0.377 5.377 7 C 0.045 3.955 8 C -0.222 4.222 9 C -0.186 4.186 10 C -0.010 4.010 11 C -0.523 4.523 12 H 0.096 0.904 13 C -0.181 4.181 14 N -0.467 5.467 15 Si 0.805 3.195 16 H -0.189 1.189 17 H -0.182 1.182 18 H -0.193 1.193 19 C -0.105 4.105 20 N -0.262 5.262 21 H 0.048 0.952 22 H 0.100 0.900 23 H 0.091 0.909 24 H 0.085 0.915 25 H 0.102 0.898 26 H 0.047 0.953 27 H 0.101 0.899 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.228 0.772 32 H 0.147 0.853 33 H 0.136 0.864 34 H 0.098 0.902 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.509 7.670 -4.484 14.539 hybrid contribution 0.875 0.146 0.665 1.108 sum -10.635 7.816 -3.819 13.739 Atomic orbital electron populations 1.22438 0.85589 1.02954 1.01287 1.61865 1.09338 1.14657 1.42401 1.22526 1.01105 0.88151 1.01240 1.22096 0.93692 0.99246 0.92197 1.21059 0.93457 0.94829 0.88361 1.43645 1.03665 1.63455 1.26892 1.18196 0.86364 0.98076 0.92838 1.20922 0.93960 1.06932 1.00425 1.21246 0.95089 1.04301 0.97974 1.18661 0.95518 0.94639 0.92217 1.19557 0.92363 1.10667 1.29748 0.90369 1.26729 1.04201 0.93623 0.93560 1.69857 1.38456 1.07894 1.30488 0.85158 0.76590 0.79386 0.78327 1.18889 1.18213 1.19309 1.22541 0.86852 1.01987 0.99131 1.66746 1.18084 1.16458 1.24946 0.95181 0.89956 0.90948 0.91523 0.89842 0.95285 0.89880 0.93928 0.92975 0.93015 0.77171 0.85293 0.86367 0.90237 0.84766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.57 127.69 1.22 1.60 16 2 N -0.56 -11.17 5.02 -948.82 -4.76 -15.94 16 3 C 0.02 0.31 9.32 127.69 1.19 1.50 16 4 C 0.06 1.25 5.07 86.30 0.44 1.69 16 5 C 0.15 4.22 4.79 86.38 0.41 4.63 16 6 N -0.74 -26.74 5.70 -344.87 -1.97 -28.71 16 7 C 0.28 12.92 7.64 133.32 1.02 13.94 16 8 C -0.20 -8.95 9.24 22.23 0.21 -8.75 16 9 C -0.16 -7.91 9.88 22.64 0.22 -7.68 16 10 C -0.01 -0.29 5.58 -21.18 -0.12 -0.41 16 11 C -0.49 -26.90 9.07 23.39 0.21 -26.68 16 12 H 0.08 4.06 7.90 -2.91 -0.02 4.04 16 13 C 0.03 1.63 5.15 85.23 0.44 2.07 16 14 N -0.84 -45.24 10.96 21.82 0.24 -45.00 16 15 Si 0.98 38.83 29.59 68.60 2.03 40.86 16 16 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 17 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 18 H -0.27 -10.15 7.11 99.48 0.71 -9.45 16 19 C 0.05 3.07 9.89 85.36 0.84 3.91 16 20 N -0.55 -28.88 10.37 -191.20 -1.98 -30.87 16 21 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 22 H 0.08 1.02 8.12 -2.39 -0.02 1.00 16 23 H 0.07 1.04 8.12 -2.38 -0.02 1.02 16 24 H 0.07 1.27 6.47 -2.39 -0.02 1.26 16 25 H 0.08 1.19 8.12 -2.39 -0.02 1.17 16 26 H 0.03 0.49 8.14 -2.38 -0.02 0.47 16 27 H 0.08 1.79 8.06 -2.39 -0.02 1.77 16 28 H 0.04 0.92 8.12 -2.39 -0.02 0.90 16 29 H 0.05 1.48 6.31 -2.39 -0.02 1.46 16 30 H 0.05 1.57 7.90 -2.39 -0.02 1.55 16 31 H 0.39 13.42 8.59 -92.71 -0.80 12.62 16 32 H 0.13 4.91 6.64 -2.91 -0.02 4.89 16 33 H 0.12 5.32 8.06 -2.91 -0.02 5.30 16 34 H 0.29 14.02 8.30 -92.71 -0.77 13.25 16 35 H 0.14 7.92 6.16 -2.91 -0.02 7.90 16 Total: -1.00 -62.71 291.34 -0.07 -62.77 By element: Atomic # 1 Polarization: 30.77 SS G_CDS: 0.29 Total: 31.06 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: 6.09 Total: -14.18 kcal Atomic # 7 Polarization: -112.04 SS G_CDS: -8.47 Total: -120.51 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 2.03 Total: 40.86 kcal Total: -62.71 -0.07 -62.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161663457.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.955 kcal (2) G-P(sol) polarization free energy of solvation -62.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds