Wall clock time and date at job start Thu Apr 9 2020 12:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36345 * 125.63310 * 2 1 4 4 C 1.34848 * 108.21855 * 180.02562 * 3 2 1 5 5 C 1.40895 * 107.41714 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.29128 * 180.02562 * 5 4 3 7 7 N 1.46900 * 109.46931 * 89.97690 * 6 5 4 8 8 C 1.46906 * 111.00008 * 180.02562 * 7 6 5 9 9 C 1.53002 * 109.47109 * 180.02562 * 8 7 6 10 10 C 1.53000 * 109.47112 * 299.99977 * 9 8 7 11 11 C 1.53007 * 109.46970 * 59.99939 * 9 8 7 12 12 C 1.50697 * 109.46890 * 179.97438 * 9 8 7 13 13 H 1.07997 * 120.00151 * 0.02562 * 12 9 8 14 14 C 1.37879 * 119.99624 * 179.97438 * 12 9 8 15 15 N 1.31507 * 120.00376 * 0.02562 * 14 12 9 16 16 Si 1.86805 * 119.99790 * 180.02562 * 14 12 9 17 17 H 1.48500 * 109.46760 * 60.00363 * 16 14 12 18 18 H 1.48497 * 109.47035 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47212 * 300.00387 * 16 14 12 20 20 C 1.34844 * 107.41841 * 0.02562 * 5 4 3 21 21 H 1.08997 * 109.47501 * 269.97463 * 1 2 3 22 22 H 1.09004 * 109.47331 * 29.98008 * 1 2 3 23 23 H 1.09002 * 109.46732 * 149.97633 * 1 2 3 24 24 H 1.08001 * 125.88962 * 0.05572 * 3 2 1 25 25 H 1.07999 * 126.29387 * 180.26704 * 4 3 2 26 26 H 1.08991 * 109.47528 * 209.97807 * 6 5 4 27 27 H 1.09004 * 109.47059 * 329.98194 * 6 5 4 28 28 H 1.00898 * 111.00365 * 303.95654 * 7 6 5 29 29 H 1.09001 * 109.46908 * 299.99902 * 8 7 6 30 30 H 1.09000 * 109.47164 * 60.00132 * 8 7 6 31 31 H 1.09000 * 109.46941 * 60.00345 * 10 9 8 32 32 H 1.08995 * 109.46979 * 180.02562 * 10 9 8 33 33 H 1.09000 * 109.47005 * 300.00051 * 10 9 8 34 34 H 1.08999 * 109.47178 * 60.00419 * 11 9 8 35 35 H 1.09007 * 109.46557 * 179.97438 * 11 9 8 36 36 H 1.08998 * 109.46966 * 299.99577 * 11 9 8 37 37 H 0.97003 * 120.00569 * 179.97438 * 15 14 12 38 38 H 1.07994 * 125.89572 * 180.02562 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2593 1.1082 0.0000 4 6 3.5460 0.7046 -0.0006 5 6 3.5461 -0.7044 -0.0003 6 6 4.7608 -1.5963 -0.0003 7 7 5.1558 -1.8854 1.3848 8 6 6.3399 -2.7540 1.4241 9 6 6.7198 -3.0328 2.8798 10 6 7.0321 -1.7125 3.5871 11 6 5.5541 -3.7271 3.5871 12 6 7.9341 -3.9244 2.9200 13 1 8.3895 -4.2584 1.9995 14 6 8.4642 -4.3127 4.1322 15 7 7.9099 -3.9056 5.2531 16 14 9.9698 -5.4174 4.1822 17 1 11.1009 -4.7436 3.4953 18 1 10.3384 -5.6880 5.5949 19 1 9.6665 -6.6989 3.4959 20 6 2.2595 -1.1081 -0.0002 21 1 -0.3634 -0.0005 1.0276 22 1 -0.3634 0.8902 -0.5135 23 1 -0.3633 -0.8898 -0.5142 24 1 1.9171 2.1325 0.0009 25 1 4.4165 1.3438 0.0033 26 1 4.5268 -2.5289 -0.5135 27 1 5.5803 -1.0941 -0.5145 28 1 5.3157 -1.0331 1.9006 29 1 6.1172 -3.6948 0.9206 30 1 7.1702 -2.2596 0.9198 31 1 6.1535 -1.0681 3.5580 32 1 7.3032 -1.9112 4.6240 33 1 7.8625 -1.2179 3.0832 34 1 5.3317 -4.6677 3.0832 35 1 5.8251 -3.9261 4.6240 36 1 4.6757 -3.0825 3.5579 37 1 8.2826 -4.1791 6.1058 38 1 1.9173 -2.1324 0.0004 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459727264.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:01 Heat of formation + Delta-G solvation = 46.466477 kcal Electronic energy + Delta-G solvation = -16618.404436 eV Core-core repulsion = 14075.654167 eV Total energy + Delta-G solvation = -2542.750269 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -40.96689 -36.79446 -34.25816 -32.46148 -30.76665 -28.75392 -26.97185 -25.45355 -25.12331 -24.50896 -22.57155 -20.16796 -19.32514 -18.29877 -16.90188 -15.75572 -15.21647 -15.00801 -14.44752 -13.97021 -13.74318 -13.25798 -12.94868 -12.69682 -12.49836 -12.35699 -12.07583 -11.90207 -11.62323 -11.04420 -11.00830 -10.82560 -10.56711 -10.48271 -10.06830 -9.97852 -9.27485 -8.99104 -8.54107 -8.34805 -8.20711 -7.91912 -7.45576 -5.83182 -3.93411 2.41205 3.04792 3.17994 3.37838 3.42230 3.45161 4.51069 4.65170 5.00472 5.09092 5.23206 5.27017 5.39006 5.41809 5.59643 5.73366 5.99836 6.16706 6.34225 6.48560 6.53325 6.68377 6.84402 7.01045 7.18058 7.20117 7.28567 7.38866 7.50293 7.51439 7.59281 7.85060 7.87610 7.98638 8.17783 8.32811 8.45235 8.65628 9.08230 9.71018 11.17188 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.055101 B = 0.004533 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.034797 B = 6175.140324 C = 6245.275930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.458 5.458 3 C -0.025 4.025 4 C -0.193 4.193 5 C -0.154 4.154 6 C 0.129 3.871 7 N -0.682 5.682 8 C 0.074 3.926 9 C 0.068 3.932 10 C -0.131 4.131 11 C -0.118 4.118 12 C -0.506 4.506 13 H 0.051 0.949 14 C 0.065 3.935 15 N -0.885 5.885 16 Si 0.888 3.112 17 H -0.279 1.279 18 H -0.288 1.288 19 H -0.279 1.279 20 C 0.001 3.999 21 H 0.069 0.931 22 H 0.078 0.922 23 H 0.080 0.920 24 H 0.156 0.844 25 H 0.131 0.869 26 H 0.066 0.934 27 H 0.025 0.975 28 H 0.338 0.662 29 H 0.054 0.946 30 H 0.011 0.989 31 H 0.012 0.988 32 H 0.082 0.918 33 H 0.018 0.982 34 H 0.017 0.983 35 H 0.072 0.928 36 H 0.020 0.980 37 H 0.258 0.742 38 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.730 8.066 -9.444 17.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.135 5.135 3 C -0.154 4.154 4 C -0.218 4.218 5 C -0.160 4.160 6 C -0.001 4.001 7 N -0.314 5.314 8 C -0.054 4.054 9 C 0.068 3.932 10 C -0.189 4.189 11 C -0.176 4.176 12 C -0.544 4.544 13 H 0.069 0.931 14 C -0.136 4.136 15 N -0.524 5.524 16 Si 0.716 3.284 17 H -0.205 1.205 18 H -0.214 1.214 19 H -0.204 1.204 20 C -0.129 4.129 21 H 0.088 0.912 22 H 0.097 0.903 23 H 0.099 0.901 24 H 0.174 0.826 25 H 0.149 0.851 26 H 0.085 0.915 27 H 0.043 0.957 28 H 0.157 0.843 29 H 0.073 0.927 30 H 0.029 0.971 31 H 0.030 0.970 32 H 0.100 0.900 33 H 0.037 0.963 34 H 0.036 0.964 35 H 0.091 0.909 36 H 0.039 0.961 37 H 0.068 0.932 38 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -13.527 7.519 -9.174 17.991 hybrid contribution 1.516 0.042 -0.211 1.531 sum -12.010 7.560 -9.385 17.015 Atomic orbital electron populations 1.21941 0.77824 1.03804 1.02979 1.43913 1.05827 1.06309 1.57417 1.21681 0.90536 0.91196 1.12022 1.20832 0.95809 0.94808 1.10354 1.19478 0.93824 0.93641 1.09105 1.20185 0.92306 0.96296 0.91288 1.60651 1.38572 1.21072 1.11086 1.22152 0.88112 0.94830 1.00322 1.18088 0.93765 0.93037 0.88342 1.21819 0.96390 0.96565 1.04147 1.21625 0.96044 0.97244 1.02640 1.21102 1.11680 1.29536 0.92122 0.93086 1.24884 0.96849 0.96088 0.95761 1.69830 1.40248 1.45211 0.97139 0.86734 0.83605 0.81272 0.76761 1.20500 1.21419 1.20440 1.21622 0.90068 0.91126 1.10105 0.91195 0.90321 0.90138 0.82644 0.85119 0.91534 0.95711 0.84331 0.92739 0.97082 0.96954 0.89958 0.96297 0.96419 0.90885 0.96075 0.93224 0.82310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.56 11.12 59.85 0.67 1.22 16 2 N -0.46 -5.41 3.15 -124.53 -0.39 -5.80 16 3 C -0.03 -0.31 11.43 -16.75 -0.19 -0.50 16 4 C -0.19 -2.74 10.81 -39.78 -0.43 -3.17 16 5 C -0.15 -2.37 5.65 -104.82 -0.59 -2.97 16 6 C 0.13 2.15 6.18 -4.98 -0.03 2.12 16 7 N -0.68 -13.29 5.70 -115.05 -0.66 -13.94 16 8 C 0.07 1.64 4.59 -3.82 -0.02 1.62 16 9 C 0.07 1.72 0.57 -155.66 -0.09 1.63 16 10 C -0.13 -3.24 7.92 37.16 0.29 -2.95 16 11 C -0.12 -2.99 8.09 37.16 0.30 -2.69 16 12 C -0.51 -14.01 8.01 -34.44 -0.28 -14.29 16 13 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 14 C 0.06 1.80 5.15 -17.82 -0.09 1.71 16 15 N -0.89 -25.09 9.35 55.43 0.52 -24.57 16 16 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 C 0.00 0.01 11.35 -16.75 -0.19 -0.18 16 21 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.16 1.41 8.06 -52.49 -0.42 0.99 16 25 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 26 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.34 6.69 6.76 -39.29 -0.27 6.43 16 29 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.01 0.26 6.57 -51.93 -0.34 -0.08 16 32 H 0.08 2.23 6.07 -51.93 -0.32 1.92 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 2.01 6.07 -51.93 -0.32 1.70 16 36 H 0.02 0.49 7.60 -51.93 -0.39 0.10 16 37 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 38 H 0.16 1.96 8.06 -52.49 -0.42 1.54 16 LS Contribution 306.51 15.07 4.62 4.62 Total: -1.00 -30.00 306.51 -7.83 -37.82 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -6.25 Total: 3.81 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: -0.65 Total: -18.44 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: -0.53 Total: -44.31 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.00 -7.83 -37.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459727264.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.289 kcal (2) G-P(sol) polarization free energy of solvation -29.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds