Wall clock time and date at job start Thu Apr 9 2020 12:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33391 * 125.20292 * 2 1 4 4 C 1.38419 * 114.91926 * 179.86277 * 3 2 1 5 5 C 1.33386 * 114.92491 * 0.42683 * 4 3 2 6 6 C 1.50692 * 125.20627 * 179.75236 * 5 4 3 7 7 N 1.46901 * 109.47393 * 89.99934 * 6 5 4 8 8 C 1.47483 * 111.00352 * 265.97585 * 7 6 5 9 9 C 1.53516 * 87.92997 * 221.29285 * 8 7 6 10 10 C 1.50705 * 114.34059 * 139.67970 * 9 8 7 11 11 H 1.07994 * 120.00121 * 266.07669 * 10 9 8 12 12 C 1.37875 * 119.99681 * 86.07399 * 10 9 8 13 13 N 1.31516 * 119.99544 * 179.97438 * 12 10 9 14 14 Si 1.86799 * 120.00351 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.47200 * 89.99664 * 14 12 10 16 16 H 1.48505 * 109.47240 * 209.99834 * 14 12 10 17 17 H 1.48507 * 109.46914 * 329.99793 * 14 12 10 18 18 C 1.47481 * 111.00488 * 169.99868 * 7 6 5 19 19 S 1.75883 * 125.20454 * 180.30592 * 2 1 3 20 20 H 1.09002 * 109.47152 * 179.71913 * 1 2 3 21 21 H 1.09001 * 109.46980 * 59.72014 * 1 2 3 22 22 H 1.09004 * 109.47113 * 299.71995 * 1 2 3 23 23 H 1.08003 * 122.53814 * 0.02562 * 3 2 1 24 24 H 1.08004 * 122.53487 * 180.20097 * 4 3 2 25 25 H 1.08997 * 109.47448 * 209.99675 * 6 5 4 26 26 H 1.08996 * 109.47684 * 330.00130 * 6 5 4 27 27 H 1.09001 * 113.46731 * 336.05681 * 8 7 6 28 28 H 1.08992 * 113.48007 * 106.52644 * 8 7 6 29 29 H 1.08998 * 114.16915 * 272.37240 * 9 8 7 30 30 H 0.97007 * 119.99554 * 180.02562 * 13 12 10 31 31 H 1.09001 * 113.47556 * 253.47199 * 18 7 6 32 32 H 1.09003 * 113.47169 * 23.87636 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0900 0.0000 4 6 3.6380 0.8429 0.0030 5 6 3.9751 -0.4477 -0.0036 6 6 5.3860 -0.9770 -0.0074 7 7 5.8458 -1.1557 1.3763 8 6 6.5789 0.0341 1.8476 9 6 7.5840 -0.9172 2.5121 10 6 9.0227 -0.4858 2.3886 11 1 9.6315 -0.8611 1.5794 12 6 9.5616 0.3881 3.3088 13 7 10.8173 0.7642 3.2014 14 14 8.5089 1.0368 4.7089 15 1 8.6232 0.1269 5.8769 16 1 8.9751 2.3940 5.0912 17 1 7.0913 1.1053 4.2717 18 6 7.1237 -1.8907 1.4180 19 16 2.5210 -1.4371 -0.0077 20 1 -0.3633 -1.0277 -0.0050 21 1 -0.3633 0.5182 -0.8875 22 1 -0.3633 0.5095 0.8925 23 1 1.8669 2.0895 0.0004 24 1 4.3720 1.6351 0.0065 25 1 5.4132 -1.9354 -0.5258 26 1 6.0384 -0.2689 -0.5183 27 1 7.0099 0.6263 1.0404 28 1 6.0159 0.6373 2.5597 29 1 7.3107 -1.2202 3.5228 30 1 11.1966 1.3788 3.8490 31 1 7.0223 -2.9187 1.7661 32 1 7.6996 -1.8129 0.4958 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597193971.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:05:24 Heat of formation + Delta-G solvation = 62.622433 kcal Electronic energy + Delta-G solvation = -14205.272218 eV Core-core repulsion = 11872.423639 eV Total energy + Delta-G solvation = -2332.848580 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.30068 -37.67440 -33.16600 -32.24733 -30.05365 -27.18645 -25.07443 -24.65074 -22.89283 -21.65351 -18.90528 -18.43402 -17.04620 -16.71043 -15.26127 -15.20540 -14.43307 -14.11084 -13.88540 -13.49741 -13.20271 -12.93557 -12.51036 -12.32982 -11.94618 -11.78931 -11.55221 -11.25856 -11.00906 -10.62771 -10.33706 -9.98137 -9.95304 -9.61988 -9.15322 -8.58220 -8.32457 -8.31260 -8.15241 -6.12359 -4.13020 1.12476 1.74601 2.15077 2.87758 3.29164 3.37627 3.43187 4.41054 4.75670 4.86084 5.09253 5.16553 5.19331 5.30371 5.39056 5.57262 5.69841 5.79470 5.86995 5.90659 6.08180 6.23624 6.30814 6.38928 6.43982 6.48597 6.66001 6.74757 6.95890 7.32919 7.65838 7.80479 8.46633 8.90481 9.50749 11.00070 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.042362 B = 0.005654 C = 0.005320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.815340 B = 4950.831822 C = 5262.292360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.196 4.196 3 C -0.135 4.135 4 C -0.141 4.141 5 C -0.143 4.143 6 C 0.085 3.915 7 N -0.479 5.479 8 C -0.008 4.008 9 C 0.001 3.999 10 C -0.512 4.512 11 H 0.074 0.926 12 C 0.075 3.925 13 N -0.899 5.899 14 Si 0.875 3.125 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.257 1.257 18 C 0.008 3.992 19 S 0.100 5.900 20 H 0.064 0.936 21 H 0.072 0.928 22 H 0.072 0.928 23 H 0.134 0.866 24 H 0.136 0.864 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.264 0.736 31 H 0.068 0.932 32 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.770 -1.265 -6.802 19.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.313 4.313 3 C -0.166 4.166 4 C -0.172 4.172 5 C -0.261 4.261 6 C -0.045 4.045 7 N -0.201 5.201 8 C -0.137 4.137 9 C -0.019 4.019 10 C -0.550 4.550 11 H 0.092 0.908 12 C -0.128 4.128 13 N -0.536 5.536 14 Si 0.702 3.298 15 H -0.202 1.202 16 H -0.215 1.215 17 H -0.181 1.181 18 C -0.120 4.120 19 S 0.363 5.637 20 H 0.083 0.917 21 H 0.090 0.910 22 H 0.091 0.909 23 H 0.152 0.848 24 H 0.154 0.846 25 H 0.093 0.907 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.508 -2.961 -6.406 19.808 hybrid contribution 0.522 2.345 0.237 2.414 sum -17.986 -0.617 -6.169 19.024 Atomic orbital electron populations 1.20264 0.88236 1.02525 1.02563 1.24418 0.99642 0.96072 1.11170 1.19976 0.92938 0.98985 1.04686 1.20067 0.96105 0.96114 1.04875 1.24359 0.98276 0.96049 1.07412 1.21156 0.89551 1.00246 0.93594 1.68916 1.23639 1.11655 1.15930 1.24438 0.95445 0.94002 0.99836 1.20505 0.95055 0.92056 0.94277 1.20912 0.93606 1.27281 1.13161 0.90767 1.25004 0.94627 0.95678 0.97481 1.69914 1.13059 1.33977 1.36642 0.86882 0.81880 0.78266 0.82766 1.20248 1.21486 1.18124 1.23824 0.89032 0.98787 1.00361 1.84101 0.96691 1.09564 1.73309 0.91729 0.90954 0.90891 0.84839 0.84639 0.90671 0.91847 0.91677 0.91846 0.92551 0.92575 0.91386 0.91931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.38 36.01 0.37 -0.32 16 2 C -0.20 -2.43 6.51 -36.00 -0.23 -2.66 16 3 C -0.14 -1.76 10.05 -41.21 -0.41 -2.18 16 4 C -0.14 -2.09 10.05 -41.21 -0.41 -2.50 16 5 C -0.14 -2.23 6.09 -36.01 -0.22 -2.45 16 6 C 0.08 1.39 5.31 -4.98 -0.03 1.37 16 7 N -0.48 -9.25 6.32 -246.07 -1.55 -10.80 16 8 C -0.01 -0.18 6.70 -7.53 -0.05 -0.23 16 9 C 0.00 0.01 2.95 -91.24 -0.27 -0.26 16 10 C -0.51 -14.05 9.38 -34.44 -0.32 -14.38 16 11 H 0.07 2.20 8.06 -52.49 -0.42 1.78 16 12 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 13 N -0.90 -27.04 13.96 55.43 0.77 -26.27 16 14 Si 0.88 21.27 27.14 -169.99 -4.61 16.66 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.26 -5.99 5.68 56.52 0.32 -5.67 16 18 C 0.01 0.17 7.25 -7.54 -0.05 0.12 16 19 S 0.10 1.37 23.31 -107.50 -2.51 -1.14 16 20 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 21 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 22 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 24 H 0.14 1.93 8.06 -52.48 -0.42 1.51 16 25 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 26 H 0.06 1.04 7.30 -51.93 -0.38 0.66 16 27 H 0.07 1.39 7.38 -51.93 -0.38 1.01 16 28 H 0.06 1.38 7.11 -51.93 -0.37 1.01 16 29 H 0.06 1.34 7.04 -51.93 -0.37 0.98 16 30 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.06 1.23 7.87 -51.93 -0.41 0.82 16 LS Contribution 280.58 15.07 4.23 4.23 Total: -1.00 -29.56 280.58 -9.90 -39.47 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -4.50 Total: -0.67 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: -1.73 Total: -21.47 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: -0.78 Total: -37.07 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.61 Total: 16.66 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -2.51 Total: -1.14 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.56 -9.90 -39.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597193971.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.089 kcal (2) G-P(sol) polarization free energy of solvation -29.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds