Wall clock time and date at job start Thu Apr 9 2020 12:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38425 * 122.53799 * 2 1 4 4 C 1.33390 * 114.92123 * 180.02562 * 3 2 1 5 5 S 1.75891 * 109.59251 * 0.02562 * 4 3 2 6 6 C 1.33383 * 122.54027 * 180.02562 * 2 1 3 7 7 C 1.50702 * 125.20368 * 359.94863 * 6 2 1 8 8 N 1.46896 * 109.47324 * 89.99329 * 7 6 2 9 9 C 1.47475 * 111.00141 * 265.97134 * 8 7 6 10 10 C 1.53518 * 87.93399 * 221.29588 * 9 8 7 11 11 C 1.50692 * 114.34078 * 139.68128 * 10 9 8 12 12 H 1.08000 * 120.00595 * 266.07675 * 11 10 9 13 13 C 1.37879 * 119.99691 * 86.08268 * 11 10 9 14 14 N 1.31513 * 120.00124 * 359.97438 * 13 11 10 15 15 Si 1.86812 * 119.99951 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47008 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47038 * 119.99960 * 15 13 11 18 18 H 1.48504 * 109.46831 * 239.99820 * 15 13 11 19 19 C 1.47479 * 110.99980 * 170.00044 * 8 7 6 20 20 H 1.09000 * 109.46976 * 89.97011 * 1 2 3 21 21 H 1.09002 * 109.47239 * 209.97776 * 1 2 3 22 22 H 1.09005 * 109.46988 * 329.97492 * 1 2 3 23 23 H 1.07997 * 122.54292 * 359.75666 * 3 2 1 24 24 H 1.08003 * 125.20243 * 179.97438 * 4 3 2 25 25 H 1.08998 * 109.47162 * 209.99957 * 7 6 2 26 26 H 1.09004 * 109.46782 * 329.99301 * 7 6 2 27 27 H 1.08997 * 113.47499 * 336.06691 * 9 8 7 28 28 H 1.09007 * 113.47289 * 106.53312 * 9 8 7 29 29 H 1.08994 * 114.17236 * 272.38190 * 10 9 8 30 30 H 0.97003 * 119.99619 * 180.02562 * 14 13 11 31 31 H 1.09004 * 113.47845 * 253.47579 * 19 8 7 32 32 H 1.08996 * 113.47573 * 23.87797 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1670 0.0000 4 6 3.5737 0.9902 -0.0005 5 16 3.9387 -0.7305 -0.0018 6 6 2.2245 -1.1244 -0.0005 7 6 1.6537 -2.5192 0.0000 8 7 1.4670 -2.9724 -1.3848 9 6 0.0943 -2.6997 -1.8497 10 6 0.1063 -4.0809 -2.5197 11 6 -1.1875 -4.8433 -2.3943 12 1 -1.3230 -5.5482 -1.5873 13 6 -2.1983 -4.6411 -3.3099 14 7 -2.0336 -3.7825 -4.2924 15 14 -3.8019 -5.5867 -3.1549 16 1 -3.7352 -6.4840 -1.9736 17 1 -4.9261 -4.6309 -2.9883 18 1 -4.0189 -6.3974 -4.3801 19 6 1.1374 -4.4091 -1.4308 20 1 -0.3633 0.0005 -1.0277 21 1 -0.3634 -0.8902 0.5135 22 1 -0.3633 0.8898 0.5142 23 1 1.7965 2.1464 -0.0039 24 1 4.3078 1.7824 -0.0010 25 1 2.3402 -3.1925 0.5133 26 1 0.6928 -2.5183 0.5147 27 1 -0.6300 -2.6164 -1.0394 28 1 0.0319 -1.8738 -2.5584 29 1 0.5104 -4.0824 -3.5319 30 1 -2.7449 -3.6400 -4.9363 31 1 1.9590 -5.0321 -1.7844 32 1 0.6924 -4.7822 -0.5084 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597194341.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:05:25 Heat of formation + Delta-G solvation = 61.515665 kcal Electronic energy + Delta-G solvation = -14514.478030 eV Core-core repulsion = 12181.581457 eV Total energy + Delta-G solvation = -2332.896573 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.088 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.23525 -37.75465 -32.90300 -31.57293 -29.60648 -27.15629 -24.94714 -24.76340 -22.89859 -21.62842 -18.64738 -18.07079 -17.06758 -16.46398 -15.12003 -14.96700 -14.41322 -14.12669 -13.78334 -13.34091 -13.07948 -12.47776 -12.00173 -11.85829 -11.69204 -11.59655 -11.49088 -11.07006 -10.99921 -10.61624 -10.52261 -10.23313 -9.79468 -9.32032 -8.95518 -8.48242 -8.30328 -8.07454 -7.99224 -6.06636 -4.11346 1.24249 1.89284 2.26123 2.92763 3.26733 3.35313 3.38594 4.38985 4.91689 5.08955 5.19557 5.28576 5.38023 5.60518 5.69112 5.76926 5.82128 5.98019 6.12081 6.23671 6.26668 6.31492 6.45380 6.65484 6.68095 6.72916 6.78421 7.14839 7.17468 7.71628 7.89292 8.04748 8.35884 8.92253 9.53859 11.02913 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.044102 B = 0.005829 C = 0.005482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.740631 B = 4802.319931 C = 5106.693865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.112 4.112 3 C -0.125 4.125 4 C -0.227 4.227 5 S 0.092 5.908 6 C -0.143 4.143 7 C 0.086 3.914 8 N -0.478 5.478 9 C 0.010 3.990 10 C 0.041 3.959 11 C -0.516 4.516 12 H 0.058 0.942 13 C 0.067 3.933 14 N -0.885 5.885 15 Si 0.890 3.110 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.283 1.283 19 C -0.006 4.006 20 H 0.074 0.926 21 H 0.065 0.935 22 H 0.059 0.941 23 H 0.134 0.866 24 H 0.158 0.842 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.261 0.739 31 H 0.063 0.937 32 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.533 7.491 9.026 13.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.156 4.156 4 C -0.363 4.363 5 S 0.357 5.643 6 C -0.261 4.261 7 C -0.044 4.044 8 N -0.200 5.200 9 C -0.119 4.119 10 C 0.022 3.978 11 C -0.554 4.554 12 H 0.076 0.924 13 C -0.136 4.136 14 N -0.523 5.523 15 Si 0.718 3.282 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.209 1.209 19 C -0.135 4.135 20 H 0.093 0.907 21 H 0.084 0.916 22 H 0.078 0.922 23 H 0.152 0.848 24 H 0.176 0.824 25 H 0.089 0.911 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.417 7.000 8.538 14.511 hybrid contribution -2.739 0.311 0.550 2.811 sum 6.679 7.311 9.088 13.441 Atomic orbital electron populations 1.20561 0.89834 1.01992 1.02819 1.18834 0.97479 0.91589 1.04556 1.19996 0.92879 0.99028 1.03672 1.25449 0.99598 0.99066 1.12174 1.84100 1.06841 1.00103 1.73296 1.24206 0.95040 0.98873 1.07983 1.21127 0.99417 0.89893 0.93992 1.68950 1.27859 1.07907 1.15326 1.24116 0.86485 1.02394 0.98913 1.20106 0.92938 0.90881 0.93920 1.21060 0.98648 1.23807 1.11883 0.92372 1.25017 0.98664 0.94996 0.94886 1.69982 1.33158 1.34449 1.14685 0.86575 0.83638 0.79929 0.78100 1.19716 1.20981 1.20903 1.24038 0.99237 0.89426 1.00778 0.90712 0.91625 0.92183 0.84786 0.82395 0.91113 0.92097 0.92732 0.91886 0.91806 0.92908 0.91898 0.92740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.35 9.15 36.01 0.33 -1.02 16 2 C -0.11 -1.74 5.80 -106.25 -0.62 -2.36 16 3 C -0.12 -1.69 9.98 -41.21 -0.41 -2.11 16 4 C -0.23 -2.92 11.23 29.04 0.33 -2.60 16 5 S 0.09 1.32 23.33 -107.50 -2.51 -1.19 16 6 C -0.14 -2.35 6.09 -36.00 -0.22 -2.57 16 7 C 0.09 1.48 4.98 -4.98 -0.02 1.46 16 8 N -0.48 -9.75 6.32 -246.11 -1.55 -11.30 16 9 C 0.01 0.22 6.47 -7.55 -0.05 0.17 16 10 C 0.04 1.01 3.76 -91.24 -0.34 0.67 16 11 C -0.52 -13.86 8.83 -34.44 -0.30 -14.17 16 12 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 13 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 14 N -0.89 -25.38 13.26 55.43 0.74 -24.65 16 15 Si 0.89 20.83 29.54 -169.99 -5.02 15.80 16 16 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 C -0.01 -0.13 7.24 -7.55 -0.05 -0.18 16 20 H 0.07 1.18 7.99 -51.93 -0.41 0.77 16 21 H 0.06 0.97 6.37 -51.93 -0.33 0.64 16 22 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 23 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 24 H 0.16 1.58 8.06 -52.48 -0.42 1.15 16 25 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 26 H 0.06 1.04 5.80 -51.93 -0.30 0.74 16 27 H 0.05 1.22 7.08 -51.93 -0.37 0.85 16 28 H 0.06 1.51 8.14 -51.92 -0.42 1.09 16 29 H 0.06 1.76 8.11 -51.93 -0.42 1.34 16 30 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.05 1.10 7.87 -51.93 -0.41 0.69 16 LS Contribution 280.70 15.07 4.23 4.23 Total: -1.00 -28.33 280.70 -9.90 -38.23 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -4.32 Total: -0.17 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: -1.46 Total: -20.96 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: -0.82 Total: -35.95 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -2.51 Total: -1.19 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.33 -9.90 -38.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597194341.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.751 kcal (2) G-P(sol) polarization free energy of solvation -28.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds