Wall clock time and date at job start Thu Apr 9 2020 12:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76199 * 103.00071 * 2 1 4 4 C 1.39198 * 119.71012 * 179.72307 * 3 2 1 5 5 C 1.38267 * 119.09173 * 179.77352 * 4 3 2 6 6 C 1.38906 * 118.51254 * 0.49191 * 5 4 3 7 7 C 1.50709 * 120.33219 * 179.72734 * 6 5 4 8 8 C 1.53000 * 109.47072 * 265.02576 * 7 6 5 9 9 C 1.50699 * 109.47035 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99845 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99671 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00503 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99673 * 180.02562 * 11 9 8 14 14 H 1.48493 * 109.47189 * 90.00161 * 13 11 9 15 15 H 1.48504 * 109.47073 * 210.00486 * 13 11 9 16 16 H 1.48504 * 109.46858 * 329.99977 * 13 11 9 17 17 C 1.38028 * 119.34093 * 359.75575 * 6 5 4 18 18 C 1.50700 * 119.56943 * 179.97438 * 17 6 5 19 19 N 1.31956 * 120.86089 * 359.97438 * 17 6 5 20 20 H 1.09000 * 109.46946 * 60.00083 * 1 2 3 21 21 H 1.08999 * 109.47514 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47085 * 299.99567 * 1 2 3 23 23 H 1.08004 * 120.45420 * 0.02562 * 4 3 2 24 24 H 1.08005 * 120.74418 * 180.24555 * 5 4 3 25 25 H 1.09004 * 109.46630 * 25.02550 * 7 6 5 26 26 H 1.08999 * 109.46928 * 145.02545 * 7 6 5 27 27 H 1.08999 * 109.47210 * 300.00245 * 8 7 6 28 28 H 1.09001 * 109.47031 * 59.99708 * 8 7 6 29 29 H 0.96995 * 119.99805 * 180.02562 * 12 11 9 30 30 H 1.08998 * 109.47486 * 270.01774 * 18 17 6 31 31 H 1.09001 * 109.47462 * 30.01907 * 18 17 6 32 32 H 1.09012 * 109.47135 * 150.01703 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5435 2.1170 0.0058 5 6 3.8401 3.4675 0.0010 6 6 2.7901 4.3769 0.0009 7 6 3.0664 5.8585 0.0019 8 6 3.0361 6.3819 1.4393 9 6 3.3130 7.8633 1.4403 10 1 3.4922 8.3798 0.5089 11 6 3.3365 8.5593 2.6303 12 7 3.1178 7.9305 3.7644 13 14 3.6790 10.3957 2.6315 14 1 2.3988 11.1381 2.5093 15 1 4.3510 10.7730 3.9009 16 1 4.5598 10.7356 1.4852 17 6 1.4911 3.9102 0.0005 18 6 0.3480 4.8923 0.0010 19 7 1.2371 2.6153 -0.0003 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 4.3355 1.3827 0.0100 24 1 4.8651 3.8078 0.0014 25 1 4.0487 6.0451 -0.4322 26 1 2.3055 6.3703 -0.5873 27 1 2.0539 6.1952 1.8733 28 1 3.7969 5.8700 2.0285 29 1 3.1340 8.4203 4.6014 30 1 0.0725 5.1287 1.0287 31 1 0.6523 5.8043 -0.5126 32 1 -0.5077 4.4542 -0.5130 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250060868.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:04:41 Heat of formation + Delta-G solvation = 7.726258 kcal Electronic energy + Delta-G solvation = -14148.366859 eV Core-core repulsion = 11813.137803 eV Total energy + Delta-G solvation = -2335.229056 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.088 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.96216 -34.68130 -32.74165 -32.53620 -29.73143 -28.76803 -27.38608 -25.37275 -22.70962 -21.89446 -20.34824 -17.51486 -16.44325 -16.34088 -15.08861 -14.61105 -14.38224 -14.23067 -13.56858 -13.45167 -13.17454 -12.75178 -12.39316 -12.30085 -12.24277 -11.78040 -11.61080 -11.15588 -10.94531 -10.67316 -10.45333 -10.00243 -9.85670 -9.33157 -9.30292 -9.10958 -8.95010 -8.39399 -7.32195 -6.04124 -4.07824 1.32528 1.55281 1.59490 2.32602 3.29230 3.35952 3.38713 3.96816 4.42363 4.69951 5.10925 5.15030 5.20135 5.29399 5.31644 5.33256 5.59931 5.75513 5.79978 5.98694 6.00050 6.19135 6.34144 6.40269 6.58126 6.75074 6.82422 7.07549 7.61868 7.72793 7.94460 8.07138 8.34426 8.99035 9.56782 11.06772 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.049329 B = 0.004931 C = 0.004816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.481639 B = 5677.252338 C = 5812.219173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.103 6.103 3 C 0.105 3.895 4 C -0.153 4.153 5 C -0.062 4.062 6 C -0.108 4.108 7 C -0.076 4.076 8 C 0.031 3.969 9 C -0.523 4.523 10 H 0.057 0.943 11 C 0.059 3.941 12 N -0.894 5.894 13 Si 0.892 3.108 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.273 1.273 17 C 0.140 3.860 18 C -0.103 4.103 19 N -0.490 5.490 20 H 0.084 0.916 21 H 0.098 0.902 22 H 0.085 0.915 23 H 0.133 0.867 24 H 0.138 0.862 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.019 0.981 28 H 0.016 0.984 29 H 0.261 0.739 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.172 -12.353 -8.056 15.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S 0.135 5.865 3 C -0.144 4.144 4 C -0.179 4.179 5 C -0.089 4.089 6 C -0.112 4.112 7 C -0.114 4.114 8 C -0.006 4.006 9 C -0.561 4.561 10 H 0.075 0.925 11 C -0.143 4.143 12 N -0.533 5.533 13 Si 0.720 3.280 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.198 1.198 17 C -0.001 4.001 18 C -0.160 4.160 19 N -0.203 5.203 20 H 0.103 0.897 21 H 0.116 0.884 22 H 0.104 0.896 23 H 0.150 0.850 24 H 0.156 0.844 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.038 0.962 28 H 0.034 0.966 29 H 0.071 0.929 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.423 -13.651 -7.865 16.122 hybrid contribution 0.303 2.323 0.250 2.356 sum -3.119 -11.328 -7.615 14.001 Atomic orbital electron populations 1.23359 0.93828 1.05498 1.06646 1.85245 1.07835 1.00628 1.92802 1.22671 0.92135 0.97379 1.02183 1.21516 0.95425 0.96757 1.04195 1.21444 0.99890 0.91863 0.95744 1.21161 0.93051 0.98897 0.98120 1.20861 1.01172 0.87294 1.02105 1.19067 0.97627 0.95445 0.88489 1.21220 1.48646 0.93454 0.92822 0.92522 1.25016 0.95269 0.98384 0.95626 1.69967 1.49606 1.35970 0.97720 0.86597 0.78442 0.85530 0.77462 1.20619 1.21225 1.19831 1.21064 0.94270 0.90014 0.94708 1.20773 0.94778 0.96786 1.03703 1.67730 1.34925 1.02339 1.15323 0.89696 0.88378 0.89577 0.84953 0.84416 0.92005 0.91419 0.96246 0.96574 0.92928 0.89901 0.89720 0.91520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.35 10.02 101.05 1.01 -0.34 16 2 S -0.10 -1.35 22.55 -107.50 -2.42 -3.78 16 3 C 0.10 1.71 7.00 -16.92 -0.12 1.59 16 4 C -0.15 -2.37 9.84 -39.21 -0.39 -2.76 16 5 C -0.06 -1.03 9.83 -39.32 -0.39 -1.42 16 6 C -0.11 -1.98 5.15 -104.45 -0.54 -2.52 16 7 C -0.08 -1.52 4.79 -27.88 -0.13 -1.65 16 8 C 0.03 0.77 4.96 -27.88 -0.14 0.63 16 9 C -0.52 -14.33 9.11 -34.44 -0.31 -14.65 16 10 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 11 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 12 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 13 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 15 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 17 C 0.14 2.51 6.78 -82.62 -0.56 1.95 16 18 C -0.10 -1.65 9.53 36.01 0.34 -1.31 16 19 N -0.49 -8.58 9.34 -8.34 -0.08 -8.66 16 20 H 0.08 0.94 8.14 -51.92 -0.42 0.52 16 21 H 0.10 0.80 8.14 -51.92 -0.42 0.38 16 22 H 0.09 1.00 8.14 -51.92 -0.42 0.58 16 23 H 0.13 1.70 8.06 -52.48 -0.42 1.28 16 24 H 0.14 2.00 8.06 -52.48 -0.42 1.58 16 25 H 0.06 1.18 8.06 -51.93 -0.42 0.76 16 26 H 0.07 1.28 6.16 -51.93 -0.32 0.96 16 27 H 0.02 0.51 7.91 -51.93 -0.41 0.10 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.08 1.31 6.00 -51.93 -0.31 1.00 16 32 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 LS Contribution 287.66 15.07 4.33 4.33 Total: -1.00 -30.26 287.66 -8.15 -38.41 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -4.38 Total: -1.79 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: -1.32 Total: -18.92 kcal Atomic # 7 Polarization: -35.11 SS G_CDS: 0.66 Total: -34.46 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.35 SS G_CDS: -2.42 Total: -3.78 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.26 -8.15 -38.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060868.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.137 kcal (2) G-P(sol) polarization free energy of solvation -30.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds