Wall clock time and date at job start Thu Apr 9 2020 12:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38674 * 120.79243 * 2 1 4 4 C 1.38186 * 119.16000 * 179.97438 * 3 2 1 5 5 N 1.31888 * 120.76867 * 359.97438 * 4 3 2 6 6 C 1.31854 * 121.72254 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.61341 * 180.02562 * 6 5 4 8 8 S 1.81404 * 109.47098 * 90.00179 * 7 6 5 9 9 C 1.81397 * 103.00143 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47527 * 179.97438 * 9 8 7 11 11 C 1.50696 * 109.47289 * 179.97438 * 10 9 8 12 12 H 1.07996 * 120.00014 * 359.97438 * 11 10 9 13 13 C 1.37883 * 119.99840 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99491 * 179.97438 * 13 11 10 15 15 Si 1.86793 * 119.99862 * 359.97438 * 13 11 10 16 16 H 1.48495 * 109.47508 * 90.00437 * 15 13 11 17 17 H 1.48503 * 109.47147 * 210.00062 * 15 13 11 18 18 H 1.48501 * 109.47474 * 330.00124 * 15 13 11 19 19 C 1.38229 * 120.76695 * 0.27536 * 6 5 4 20 20 H 1.09007 * 109.47161 * 89.99924 * 1 2 3 21 21 H 1.08998 * 109.47447 * 209.99771 * 1 2 3 22 22 H 1.08996 * 109.46888 * 330.00067 * 1 2 3 23 23 H 1.07991 * 120.42024 * 0.02562 * 3 2 1 24 24 H 1.08001 * 119.61360 * 179.97438 * 4 3 2 25 25 H 1.09002 * 109.47060 * 210.00129 * 7 6 5 26 26 H 1.09001 * 109.47380 * 330.00216 * 7 6 5 27 27 H 1.09007 * 109.46846 * 299.99983 * 9 8 7 28 28 H 1.09007 * 109.47453 * 59.99610 * 9 8 7 29 29 H 1.08996 * 109.46730 * 300.00157 * 10 9 8 30 30 H 1.08998 * 109.46901 * 59.99649 * 10 9 8 31 31 H 0.97002 * 119.99306 * 179.97438 * 14 13 11 32 32 H 1.08000 * 120.41976 * 179.70395 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1912 0.0000 4 6 3.5982 1.1519 0.0005 5 7 4.2403 -0.0001 0.0016 6 6 3.5982 -1.1518 0.0016 7 6 4.3799 -2.4402 0.0034 8 16 4.6916 -2.9560 1.7144 9 6 5.6260 -4.4975 1.5121 10 6 5.9721 -5.0686 2.8887 11 6 6.7479 -6.3496 2.7206 12 1 6.9714 -6.7196 1.7309 13 6 7.1715 -7.0497 3.8303 14 7 7.8480 -8.1679 3.6836 15 14 6.7843 -6.4100 5.5421 16 1 5.4839 -6.9653 5.9957 17 1 7.8558 -6.8287 6.4811 18 1 6.7053 -4.9274 5.5104 19 6 2.2165 -1.1910 -0.0051 20 1 -0.3634 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 1.6968 2.1377 0.0004 24 1 4.1584 2.0752 0.0001 25 1 3.8081 -3.2128 -0.5106 26 1 5.3299 -2.2896 -0.5094 27 1 5.0226 -5.2185 0.9605 28 1 6.5449 -4.2959 0.9613 29 1 6.5756 -4.3475 3.4398 30 1 5.0536 -5.2702 3.4397 31 1 8.1463 -8.6602 4.4643 32 1 1.6963 -2.1374 -0.0099 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255680877.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:04:42 Heat of formation + Delta-G solvation = -5.291134 kcal Electronic energy + Delta-G solvation = -13473.457443 eV Core-core repulsion = 11137.663910 eV Total energy + Delta-G solvation = -2335.793533 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.088 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.21516 -35.77328 -35.08086 -33.68966 -33.29812 -29.01989 -28.55165 -27.47244 -24.12754 -22.95506 -21.90048 -19.15003 -17.63217 -17.38950 -16.92816 -16.43721 -16.33609 -15.76702 -15.50042 -14.83148 -14.56947 -14.30065 -14.16627 -13.72040 -13.51566 -13.49420 -13.32634 -13.03969 -12.43690 -12.15669 -11.90512 -11.84994 -11.58641 -10.94553 -10.81499 -10.45301 -10.39715 -9.90260 -8.68817 -8.34383 -6.39842 -0.13452 0.30116 0.92887 1.34291 1.36187 1.48697 1.65247 2.32880 2.88214 3.00706 3.19933 3.59972 3.85179 4.07579 4.17534 4.20036 4.24817 4.27487 4.40261 4.58190 4.70501 4.77271 4.80543 4.87697 5.02776 5.16807 5.22632 5.28853 5.38742 5.52194 5.78305 6.18281 6.65694 7.03164 7.24755 8.81707 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.048115 B = 0.004244 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.793884 B = 6595.794460 C = 6687.022386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.047 4.047 3 C -0.170 4.170 4 C 0.091 3.909 5 N -0.513 5.513 6 C 0.127 3.873 7 C -0.029 4.029 8 S -0.290 6.290 9 C -0.048 4.048 10 C 0.008 3.992 11 C -0.532 4.532 12 H 0.041 0.959 13 C 0.013 3.987 14 N -0.944 5.944 15 Si 0.946 3.054 16 H -0.263 1.263 17 H -0.279 1.279 18 H -0.254 1.254 19 C -0.165 4.165 20 H 0.091 0.909 21 H 0.075 0.925 22 H 0.087 0.913 23 H 0.168 0.832 24 H 0.179 0.821 25 H 0.114 0.886 26 H 0.093 0.907 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.021 0.979 30 H 0.024 0.976 31 H 0.269 0.731 32 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.138 19.711 -8.222 26.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.055 4.055 3 C -0.190 4.190 4 C -0.067 4.067 5 N -0.224 5.224 6 C -0.010 4.010 7 C -0.177 4.177 8 S -0.061 6.061 9 C -0.196 4.196 10 C -0.030 4.030 11 C -0.571 4.571 12 H 0.059 0.941 13 C -0.185 4.185 14 N -0.584 5.584 15 Si 0.769 3.231 16 H -0.188 1.188 17 H -0.204 1.204 18 H -0.178 1.178 19 C -0.186 4.186 20 H 0.109 0.891 21 H 0.094 0.906 22 H 0.106 0.894 23 H 0.186 0.814 24 H 0.196 0.804 25 H 0.132 0.868 26 H 0.112 0.888 27 H 0.099 0.901 28 H 0.092 0.908 29 H 0.039 0.961 30 H 0.042 0.958 31 H 0.078 0.922 32 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -15.432 20.045 -7.206 26.304 hybrid contribution -0.005 -0.972 -0.419 1.058 sum -15.437 19.073 -7.625 25.695 Atomic orbital electron populations 1.20896 0.87708 1.04402 1.03991 1.20762 0.98575 0.92342 0.93808 1.22431 0.95125 0.99973 1.01458 1.23235 0.93030 0.95825 0.94575 1.67385 1.42722 0.98958 1.13295 1.20408 0.91506 0.92144 0.96977 1.22146 1.03555 0.96521 0.95509 1.86964 1.73968 1.32147 1.13045 1.23215 1.00479 0.93794 1.02132 1.19200 0.96298 0.94721 0.92816 1.21268 1.35140 1.06804 0.93912 0.94071 1.25886 0.94155 0.94663 1.03785 1.70033 1.39244 1.17197 1.31934 0.85719 0.78624 0.79949 0.78814 1.18791 1.20403 1.17828 1.22052 0.93822 1.00522 1.02249 0.89092 0.90645 0.89399 0.81441 0.80393 0.86786 0.88813 0.90108 0.90848 0.96073 0.95776 0.92178 0.83542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 10.06 71.23 0.72 -0.42 16 2 C -0.05 -0.80 5.92 -19.67 -0.12 -0.92 16 3 C -0.17 -2.68 9.82 22.36 0.22 -2.46 16 4 C 0.09 1.85 11.18 84.67 0.95 2.79 16 5 N -0.51 -14.33 10.27 -183.88 -1.89 -16.22 16 6 C 0.13 3.43 6.04 42.55 0.26 3.69 16 7 C -0.03 -0.83 6.23 71.24 0.44 -0.39 16 8 S -0.29 -10.49 21.72 -56.49 -1.23 -11.72 16 9 C -0.05 -1.97 5.88 71.98 0.42 -1.55 16 10 C 0.01 0.41 4.05 29.85 0.12 0.53 16 11 C -0.53 -31.04 9.66 25.60 0.25 -30.79 16 12 H 0.04 2.59 7.99 -2.91 -0.02 2.57 16 13 C 0.01 0.78 5.47 84.66 0.46 1.24 16 14 N -0.94 -59.23 13.96 21.45 0.30 -58.93 16 15 Si 0.95 45.20 27.47 68.60 1.88 47.08 16 16 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16 17 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 18 H -0.25 -11.71 6.54 99.48 0.65 -11.06 16 19 C -0.16 -3.60 9.45 22.36 0.21 -3.39 16 20 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 21 H 0.07 0.75 8.10 -2.39 -0.02 0.73 16 22 H 0.09 0.61 8.10 -2.39 -0.02 0.59 16 23 H 0.17 1.41 8.06 -2.92 -0.02 1.38 16 24 H 0.18 2.55 8.06 -2.91 -0.02 2.52 16 25 H 0.11 2.71 8.08 -2.39 -0.02 2.69 16 26 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 27 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 28 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 29 H 0.02 1.05 7.20 -2.39 -0.02 1.03 16 30 H 0.02 1.16 7.57 -2.39 -0.02 1.14 16 31 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 32 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -70.24 290.02 4.03 -66.21 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: 1.03 Total: 5.22 kcal Atomic # 6 Polarization: -35.58 SS G_CDS: 3.93 Total: -31.65 kcal Atomic # 7 Polarization: -73.56 SS G_CDS: -1.59 Total: -75.15 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.88 Total: 47.08 kcal Atomic # 16 Polarization: -10.49 SS G_CDS: -1.23 Total: -11.72 kcal Total: -70.24 4.03 -66.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255680877.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.919 kcal (2) G-P(sol) polarization free energy of solvation -70.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds