Wall clock time and date at job start Thu Apr 9 2020 12:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46507 * 109.47302 * 330.59080 * 3 2 1 5 5 C 1.37095 * 120.00017 * 95.13787 * 4 3 2 6 6 H 1.08000 * 120.00204 * 162.87436 * 5 4 3 7 7 C 1.38955 * 120.00147 * 343.14239 * 5 4 3 8 8 N 1.31411 * 119.99887 * 336.94908 * 7 5 4 9 9 Si 1.86795 * 120.00192 * 156.93807 * 7 5 4 10 10 H 1.48508 * 109.46891 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47013 * 120.00403 * 9 7 5 12 12 H 1.48495 * 109.47480 * 240.00838 * 9 7 5 13 13 C 1.34778 * 119.99663 * 275.13495 * 4 3 2 14 14 O 1.21292 * 119.99443 * 179.97438 * 13 4 3 15 15 C 1.50696 * 120.00348 * 0.02562 * 13 4 3 16 16 H 1.09007 * 110.21216 * 318.06742 * 15 13 4 17 17 C 1.54479 * 110.24784 * 79.99375 * 15 13 4 18 18 C 1.54635 * 101.76125 * 93.58779 * 17 15 13 19 19 C 1.51279 * 104.19356 * 24.79783 * 18 17 15 20 20 O 1.21281 * 124.93885 * 163.71489 * 19 18 17 21 21 N 1.34419 * 110.12121 * 343.74557 * 19 18 17 22 22 H 1.08997 * 109.47250 * 210.58971 * 3 2 1 23 23 H 1.09005 * 109.47573 * 90.58884 * 3 2 1 24 24 H 0.96998 * 120.00293 * 180.02562 * 8 7 5 25 25 H 1.09003 * 110.96657 * 211.70361 * 17 15 13 26 26 H 1.08995 * 110.96824 * 335.46743 * 17 15 13 27 27 H 1.08998 * 110.48152 * 143.47941 * 18 17 15 28 28 H 1.08993 * 110.48160 * 266.11716 * 18 17 15 29 29 H 0.96994 * 124.35171 * 179.59381 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0969 -1.2024 0.6783 5 6 3.4262 -2.3150 -0.0519 6 1 4.0349 -3.0901 0.3897 7 6 2.9813 -2.4430 -1.3621 8 7 1.9184 -1.7820 -1.7626 9 14 3.8942 -3.5542 -2.5542 10 1 5.0484 -4.1812 -1.8614 11 1 2.9766 -4.6138 -3.0447 12 1 4.3830 -2.7515 -3.7039 13 6 3.2230 -1.2152 2.0201 14 8 3.6274 -2.2114 2.5816 15 6 2.8606 0.0076 2.8227 16 1 3.2239 0.9065 2.3244 17 6 1.3301 0.0854 3.0168 18 6 1.1491 -0.6197 4.3811 19 6 2.4846 -0.4438 5.0696 20 8 2.6803 -0.6007 6.2562 21 7 3.4226 -0.0877 4.1751 22 1 2.9709 0.8854 0.5229 23 1 2.9714 0.0114 -1.0276 24 1 1.6076 -1.8716 -2.6770 25 1 0.9953 1.1216 3.0659 26 1 0.8087 -0.4544 2.2264 27 1 0.3571 -0.1401 4.9563 28 1 0.9303 -1.6778 4.2374 29 1 4.3515 0.0842 4.3952 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318246366.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:04:55 Heat of formation + Delta-G solvation = -23.791575 kcal Electronic energy + Delta-G solvation = -17042.941717 eV Core-core repulsion = 14160.052731 eV Total energy + Delta-G solvation = -2882.888987 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.090 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.42469 -38.48238 -36.10518 -35.64308 -34.39842 -32.04393 -31.01638 -28.21615 -27.42288 -24.85042 -22.33175 -20.35370 -19.54540 -18.11250 -17.25178 -16.75588 -16.42416 -15.49173 -14.79305 -14.55681 -14.12027 -13.83336 -13.32445 -13.23241 -13.09985 -12.78035 -12.43295 -12.05410 -11.76560 -11.54149 -11.26378 -11.18663 -10.94251 -10.64795 -10.45993 -10.42131 -9.64004 -9.45705 -9.39916 -8.37621 -8.19548 -6.64518 -4.12411 2.87459 2.98329 3.15788 3.21326 3.35382 3.46717 3.72431 3.82124 4.01793 4.56665 4.62344 4.67942 4.79115 5.01481 5.03627 5.36478 5.37330 5.62376 5.85713 5.92331 6.05714 6.14299 6.34205 6.97957 7.26793 7.35249 7.73769 8.13447 8.52228 8.57848 8.85707 9.04205 9.55901 10.41165 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.034223 B = 0.008456 C = 0.007271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.963470 B = 3310.535117 C = 3849.770108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C 0.244 3.756 3 C 0.215 3.785 4 N -0.436 5.436 5 C -0.316 4.316 6 H 0.110 0.890 7 C 0.035 3.965 8 N -0.873 5.873 9 Si 0.926 3.074 10 H -0.266 1.266 11 H -0.282 1.282 12 H -0.278 1.278 13 C 0.437 3.563 14 O -0.560 6.560 15 C 0.114 3.886 16 H 0.103 0.897 17 C -0.126 4.126 18 C -0.153 4.153 19 C 0.530 3.470 20 O -0.547 6.547 21 N -0.703 5.703 22 H 0.086 0.914 23 H 0.129 0.871 24 H 0.275 0.725 25 H 0.088 0.912 26 H 0.097 0.903 27 H 0.100 0.900 28 H 0.106 0.894 29 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.878 7.524 1.370 7.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.145 5.145 2 C -0.074 4.074 3 C 0.088 3.912 4 N -0.157 5.157 5 C -0.443 4.443 6 H 0.128 0.872 7 C -0.169 4.169 8 N -0.511 5.511 9 Si 0.752 3.248 10 H -0.190 1.190 11 H -0.208 1.208 12 H -0.203 1.203 13 C 0.224 3.776 14 O -0.441 6.441 15 C 0.004 3.996 16 H 0.121 0.879 17 C -0.164 4.164 18 C -0.193 4.193 19 C 0.317 3.683 20 O -0.425 6.425 21 N -0.357 5.357 22 H 0.104 0.896 23 H 0.146 0.854 24 H 0.085 0.915 25 H 0.106 0.894 26 H 0.115 0.885 27 H 0.118 0.882 28 H 0.124 0.876 29 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 0.296 6.916 2.063 7.223 hybrid contribution 1.089 -0.558 -1.005 1.584 sum 1.385 6.357 1.057 6.592 Atomic orbital electron populations 1.80940 1.13360 1.09630 1.10596 1.29199 0.95309 0.91693 0.91179 1.18820 0.81888 0.88263 1.02249 1.43687 1.56180 1.11890 1.03914 1.19764 1.30742 0.99928 0.93875 0.87232 1.25278 0.94892 0.98240 0.98539 1.69862 1.19146 1.43085 1.18992 0.85866 0.79731 0.79499 0.79696 1.19043 1.20809 1.20342 1.20358 0.85136 0.89618 0.82468 1.90589 1.49648 1.34559 1.69339 1.21635 0.95265 0.98598 0.84082 0.87937 1.22700 0.93253 1.02282 0.98201 1.22295 0.96465 1.04016 0.96536 1.20760 0.87584 0.74224 0.85713 1.90702 1.84482 1.52348 1.14979 1.45811 1.12346 1.69998 1.07503 0.89621 0.85362 0.91485 0.89379 0.88486 0.88157 0.87607 0.75114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -9.76 18.04 42.15 0.76 -9.00 15 2 C 0.24 4.73 10.86 -20.76 -0.23 4.50 15 3 C 0.22 3.73 4.91 -6.83 -0.03 3.70 15 4 N -0.44 -9.21 2.60 -117.93 -0.31 -9.52 15 5 C -0.32 -7.62 9.32 -14.93 -0.14 -7.76 15 6 H 0.11 2.85 7.39 -52.49 -0.39 2.46 15 7 C 0.03 0.81 4.83 -17.47 -0.08 0.72 15 8 N -0.87 -20.52 9.52 55.50 0.53 -19.99 15 9 Si 0.93 18.60 29.61 -169.99 -5.03 13.56 15 10 H -0.27 -5.41 7.11 56.52 0.40 -5.01 15 11 H -0.28 -5.86 7.11 56.52 0.40 -5.46 15 12 H -0.28 -5.42 7.11 56.52 0.40 -5.02 15 13 C 0.44 9.04 6.76 -10.99 -0.07 8.96 15 14 O -0.56 -13.98 16.20 5.55 0.09 -13.89 15 15 C 0.11 1.76 3.13 -68.17 -0.21 1.54 15 16 H 0.10 1.20 6.50 -51.93 -0.34 0.86 15 17 C -0.13 -1.85 5.86 -25.10 -0.15 -1.99 15 18 C -0.15 -2.33 6.85 -26.74 -0.18 -2.52 15 19 C 0.53 9.33 8.43 -10.86 -0.09 9.24 15 20 O -0.55 -11.32 18.03 5.56 0.10 -11.22 15 21 N -0.70 -11.06 5.45 -53.88 -0.29 -11.35 15 22 H 0.09 1.05 6.22 -51.93 -0.32 0.72 15 23 H 0.13 2.31 6.49 -51.93 -0.34 1.97 15 24 H 0.27 6.27 8.31 -40.82 -0.34 5.93 15 25 H 0.09 1.03 8.14 -51.93 -0.42 0.61 15 26 H 0.10 1.68 5.26 -51.93 -0.27 1.40 15 27 H 0.10 1.28 8.14 -51.93 -0.42 0.85 15 28 H 0.11 1.74 8.14 -51.93 -0.42 1.31 15 29 H 0.41 5.76 8.96 -40.82 -0.37 5.39 15 LS Contribution 255.28 15.07 3.85 3.85 Total: -1.00 -31.19 255.28 -3.93 -35.12 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -2.43 Total: 6.04 kcal Atomic # 6 Polarization: 17.59 SS G_CDS: -1.19 Total: 16.40 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: 0.69 Total: -49.86 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: 0.19 Total: -25.10 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -31.19 -3.93 -35.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318246366.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.325 kcal (2) G-P(sol) polarization free energy of solvation -31.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds