Wall clock time and date at job start Thu Apr 9 2020 12:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35530 * 116.99831 * 2 1 4 4 C 1.39382 * 120.01840 * 180.02562 * 3 2 1 5 5 C 1.38385 * 118.04138 * 179.97438 * 4 3 2 6 6 C 1.40066 * 117.96442 * 0.02562 * 5 4 3 7 7 C 1.47791 * 120.12338 * 179.97438 * 6 5 4 8 8 O 1.21588 * 119.99831 * 345.87254 * 7 6 5 9 9 N 1.34776 * 120.00087 * 165.87064 * 7 6 5 10 10 C 1.46497 * 120.00086 * 186.98590 * 9 7 6 11 11 C 1.36832 * 119.99396 * 6.98718 * 9 7 6 12 12 H 1.07994 * 120.00558 * 319.60303 * 11 9 7 13 13 C 1.39078 * 119.99352 * 139.60835 * 11 9 7 14 14 N 1.31344 * 120.00291 * 357.40413 * 13 11 9 15 15 Si 1.86806 * 119.99782 * 177.40030 * 13 11 9 16 16 H 1.48497 * 109.46938 * 90.00049 * 15 13 11 17 17 H 1.48492 * 109.47240 * 210.00217 * 15 13 11 18 18 H 1.48502 * 109.47003 * 330.00315 * 15 13 11 19 19 N 1.32804 * 119.75009 * 359.97438 * 6 5 4 20 20 N 1.28358 * 122.07888 * 0.02562 * 19 6 5 21 21 H 1.08999 * 109.47254 * 299.99567 * 1 2 3 22 22 H 1.09000 * 109.47436 * 59.99988 * 1 2 3 23 23 H 1.09000 * 109.47093 * 179.97438 * 1 2 3 24 24 H 1.07998 * 120.97946 * 0.25172 * 4 3 2 25 25 H 1.07996 * 121.01839 * 180.02562 * 5 4 3 26 26 H 1.09003 * 109.47161 * 354.03346 * 10 9 7 27 27 H 1.08997 * 109.47274 * 114.03399 * 10 9 7 28 28 H 1.09002 * 109.47154 * 234.03203 * 10 9 7 29 29 H 0.97004 * 119.99856 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0442 1.2076 0.0000 4 6 3.4361 1.2810 -0.0005 5 6 4.0214 2.5350 -0.0011 6 6 3.1782 3.6534 -0.0005 7 6 3.7524 5.0152 -0.0004 8 8 4.9296 5.1786 0.2561 9 7 2.9711 6.0760 -0.2848 10 6 3.5675 7.4055 -0.4355 11 6 1.6208 5.9110 -0.4326 12 1 1.2362 5.0472 -0.9543 13 6 0.7437 6.8559 0.0889 14 7 1.2088 7.8799 0.7674 15 14 -1.0960 6.6688 -0.1755 16 1 -1.6782 5.8778 0.9383 17 1 -1.7297 8.0112 -0.2134 18 1 -1.3425 5.9685 -1.4616 19 7 1.8608 3.4855 0.0001 20 7 1.3221 2.3204 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 4.0400 0.3857 -0.0050 25 1 5.0954 2.6478 -0.0019 26 1 4.6263 7.3599 -0.1802 27 1 3.4567 7.7386 -1.4674 28 1 3.0635 8.1074 0.2289 29 1 0.5970 8.5391 1.1308 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318693800.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:05:00 Heat of formation + Delta-G solvation = 11.938145 kcal Electronic energy + Delta-G solvation = -16715.423160 eV Core-core repulsion = 13834.083530 eV Total energy + Delta-G solvation = -2881.339630 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.090 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.74007 -38.69447 -37.64639 -34.88824 -32.72180 -31.62803 -31.15499 -27.55281 -26.42098 -25.18090 -23.89706 -23.06971 -19.75621 -18.38165 -17.92000 -17.38694 -16.07789 -15.73155 -14.81995 -14.60040 -14.19367 -14.15033 -13.81020 -13.48496 -13.34225 -12.63521 -11.98803 -11.92470 -11.61293 -11.29576 -11.16747 -11.01050 -10.73664 -10.34194 -10.21946 -9.83159 -9.33381 -8.91576 -8.73749 -8.58553 -7.53097 -6.24633 -4.04542 1.17952 1.21832 3.11286 3.19947 3.26848 3.31975 3.56537 4.11769 4.39048 4.43223 4.61540 4.88021 5.13006 5.20278 5.32240 5.37769 5.41578 5.61497 5.70143 6.03360 6.20674 6.51859 6.75423 6.87668 7.22446 7.36060 7.73425 7.88964 8.46141 9.01571 9.19089 9.38765 9.79867 10.66041 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.022135 B = 0.010176 C = 0.007118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.686883 B = 2750.848711 C = 3932.895783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.308 6.308 3 C 0.249 3.751 4 C -0.152 4.152 5 C -0.046 4.046 6 C 0.025 3.975 7 C 0.503 3.497 8 O -0.607 6.607 9 N -0.406 5.406 10 C 0.063 3.937 11 C -0.310 4.310 12 H 0.119 0.881 13 C 0.042 3.958 14 N -0.871 5.871 15 Si 0.932 3.068 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.268 1.268 19 N -0.135 5.135 20 N -0.314 5.314 21 H 0.062 0.938 22 H 0.061 0.939 23 H 0.095 0.905 24 H 0.151 0.849 25 H 0.160 0.840 26 H 0.053 0.947 27 H 0.035 0.965 28 H 0.117 0.883 29 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.062 -10.433 -2.074 10.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.213 6.213 3 C 0.064 3.936 4 C -0.181 4.181 5 C -0.075 4.075 6 C -0.122 4.122 7 C 0.291 3.709 8 O -0.494 6.494 9 N -0.120 5.120 10 C -0.079 4.079 11 C -0.440 4.440 12 H 0.136 0.864 13 C -0.163 4.163 14 N -0.509 5.509 15 Si 0.758 3.242 16 H -0.199 1.199 17 H -0.211 1.211 18 H -0.192 1.192 19 N 0.018 4.982 20 N -0.171 5.171 21 H 0.080 0.920 22 H 0.080 0.920 23 H 0.113 0.887 24 H 0.169 0.831 25 H 0.177 0.823 26 H 0.072 0.928 27 H 0.054 0.946 28 H 0.135 0.865 29 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.985 -9.758 -1.870 10.132 hybrid contribution 0.152 -0.632 -0.064 0.653 sum -1.833 -10.390 -1.933 10.726 Atomic orbital electron populations 1.22924 0.77122 1.02807 1.03033 1.86122 1.22980 1.24229 1.87943 1.21685 0.91020 0.87200 0.93735 1.21323 0.92134 0.99363 1.05257 1.22253 1.02534 0.90364 0.92358 1.22962 0.91510 0.96662 1.01100 1.17532 0.86308 0.83498 0.83598 1.90628 1.16922 1.85231 1.56609 1.43435 1.07373 1.05937 1.55274 1.22136 0.97856 0.86559 1.01367 1.20192 0.79562 1.10036 1.34212 0.86410 1.25540 1.00887 0.95271 0.94581 1.69566 1.35519 1.12181 1.33623 0.85845 0.81724 0.77262 0.79374 1.19922 1.21098 1.19206 1.74157 1.10005 1.09956 1.04076 1.73427 1.32622 0.94671 1.16351 0.91976 0.91996 0.88687 0.83099 0.82251 0.92807 0.94630 0.86519 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.39 101.05 1.05 1.48 15 2 O -0.31 -4.55 10.48 -18.28 -0.19 -4.74 15 3 C 0.25 4.29 7.58 -16.77 -0.13 4.16 15 4 C -0.15 -2.34 10.14 -39.10 -0.40 -2.74 15 5 C -0.05 -0.82 9.71 -38.84 -0.38 -1.19 15 6 C 0.02 0.56 6.69 -82.86 -0.55 0.00 15 7 C 0.50 12.84 7.57 -12.35 -0.09 12.75 15 8 O -0.61 -16.10 15.83 5.29 0.08 -16.02 15 9 N -0.41 -10.70 2.94 -123.30 -0.36 -11.07 15 10 C 0.06 1.56 10.12 59.85 0.61 2.16 15 11 C -0.31 -8.21 7.85 -15.01 -0.12 -8.33 15 12 H 0.12 3.11 5.62 -52.49 -0.29 2.81 15 13 C 0.04 1.10 5.36 -17.45 -0.09 1.00 15 14 N -0.87 -23.23 10.68 55.50 0.59 -22.64 15 15 Si 0.93 20.63 29.55 -169.99 -5.02 15.60 15 16 H -0.27 -6.12 7.11 56.52 0.40 -5.72 15 17 H -0.29 -6.16 7.11 56.52 0.40 -5.76 15 18 H -0.27 -5.82 7.11 56.52 0.40 -5.41 15 19 N -0.13 -3.10 7.58 33.31 0.25 -2.85 15 20 N -0.31 -6.39 10.40 30.55 0.32 -6.07 15 21 H 0.06 0.77 8.11 -51.93 -0.42 0.35 15 22 H 0.06 0.76 8.11 -51.93 -0.42 0.33 15 23 H 0.09 0.80 8.14 -51.93 -0.42 0.37 15 24 H 0.15 1.74 8.06 -52.49 -0.42 1.32 15 25 H 0.16 2.53 7.78 -52.49 -0.41 2.12 15 26 H 0.05 1.28 6.92 -51.93 -0.36 0.92 15 27 H 0.04 0.81 8.14 -51.93 -0.42 0.39 15 28 H 0.12 3.02 5.34 -51.93 -0.28 2.75 15 29 H 0.27 6.78 8.31 -40.82 -0.34 6.45 15 LS Contribution 258.71 15.07 3.90 3.90 Total: -1.00 -30.54 258.71 -3.12 -33.66 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -2.58 Total: 0.92 kcal Atomic # 6 Polarization: 9.41 SS G_CDS: -0.10 Total: 9.30 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: 0.80 Total: -42.62 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.11 Total: -20.76 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -30.54 -3.12 -33.66 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318693800.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.596 kcal (2) G-P(sol) polarization free energy of solvation -30.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds