Wall clock time and date at job start Thu Apr 9 2020 12:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36881 * 119.99893 * 2 1 4 4 H 1.07998 * 119.99899 * 128.15222 * 3 2 1 5 5 C 1.39011 * 119.99839 * 308.15015 * 3 2 1 6 6 N 1.31391 * 119.99877 * 170.89999 * 5 3 2 7 7 Si 1.86803 * 120.00170 * 350.90071 * 5 3 2 8 8 H 1.48499 * 109.47357 * 91.15940 * 7 5 3 9 9 H 1.48501 * 109.46987 * 211.16365 * 7 5 3 10 10 H 1.48507 * 109.46956 * 331.15965 * 7 5 3 11 11 C 1.34771 * 120.00162 * 179.97438 * 2 1 3 12 12 O 1.21723 * 119.99980 * 3.17722 * 11 2 1 13 13 C 1.46677 * 120.00390 * 183.17581 * 11 2 1 14 14 C 1.36466 * 125.85949 * 173.08319 * 13 11 2 15 15 C 1.41287 * 107.00854 * 179.73485 * 14 13 11 16 16 C 1.47393 * 126.45931 * 180.25997 * 15 14 13 17 17 N 1.34776 * 120.00084 * 180.02562 * 16 15 14 18 18 O 1.21616 * 119.99688 * 0.02562 * 16 15 14 19 19 C 1.38237 * 107.08315 * 0.26365 * 15 14 13 20 20 N 1.34308 * 108.41220 * 359.97438 * 19 15 14 21 21 H 0.96999 * 125.39565 * 180.02562 * 20 19 15 22 22 H 1.09000 * 109.47212 * 270.42110 * 1 2 3 23 23 H 1.09001 * 109.47240 * 30.41672 * 1 2 3 24 24 H 1.08995 * 109.47115 * 150.41921 * 1 2 3 25 25 H 0.97002 * 119.99723 * 180.02562 * 6 5 3 26 26 H 1.08001 * 126.49817 * 359.97438 * 14 13 11 27 27 H 0.96999 * 120.00016 * 359.97438 * 17 16 15 28 28 H 0.97003 * 119.99855 * 180.02562 * 17 16 15 29 29 H 1.07999 * 125.79169 * 180.02562 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1854 0.0000 4 1 2.9198 1.3642 0.7355 5 6 1.8529 2.1592 -0.9467 6 7 2.3772 3.3593 -0.8412 7 14 0.7089 1.7615 -2.3690 8 1 -0.6876 2.0941 -1.9890 9 1 1.1018 2.5594 -3.5582 10 1 0.8033 0.3147 -2.6904 11 6 2.1389 -1.1671 0.0005 12 8 1.5317 -2.2205 -0.0574 13 6 3.6040 -1.1681 0.0709 14 6 4.3968 -2.2698 0.2123 15 6 5.7350 -1.8168 0.2277 16 6 6.9415 -2.6536 0.3564 17 7 8.1617 -2.0812 0.3563 18 8 6.8360 -3.8605 0.4627 19 6 5.6994 -0.4409 0.0994 20 7 4.4158 -0.0564 0.0086 21 1 4.1089 0.8586 -0.0893 22 1 -0.3634 0.0076 1.0276 23 1 -0.3634 0.8862 -0.5203 24 1 -0.3633 -0.8937 -0.5073 25 1 2.1700 4.0389 -1.5016 26 1 4.0645 -3.2943 0.2929 27 1 8.2459 -1.1187 0.2711 28 1 8.9558 -2.6320 0.4406 29 1 6.5581 0.2136 0.0753 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318936330.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:05:01 Heat of formation + Delta-G solvation = -42.433667 kcal Electronic energy + Delta-G solvation = -16600.395814 eV Core-core repulsion = 13716.698445 eV Total energy + Delta-G solvation = -2883.697368 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.090 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.42585 -40.32538 -39.52469 -37.00377 -34.56975 -34.13502 -32.04466 -30.68593 -28.27869 -26.93060 -24.18548 -22.96303 -21.06580 -20.46576 -20.39302 -18.50571 -17.82317 -17.14898 -16.95545 -16.73123 -16.35941 -15.78597 -15.61493 -14.78915 -14.67047 -14.56698 -14.42697 -13.94913 -13.92377 -13.38696 -13.19776 -12.90620 -12.31568 -12.00867 -11.36756 -11.11195 -10.85087 -10.57864 -9.99289 -9.75007 -9.17416 -8.65184 -6.52541 0.66750 0.89083 1.18744 1.32027 1.41223 2.09713 2.35158 2.37343 2.52851 2.67171 2.81053 2.97342 4.04241 4.11120 4.20206 4.37381 4.47936 4.54433 4.77003 4.95747 5.07382 5.33690 5.63395 5.78550 5.90484 6.03991 6.04797 6.60547 6.68268 6.77676 7.20437 7.51754 7.59719 8.42023 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.033929 B = 0.007711 C = 0.006703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.051813 B = 3630.467526 C = 4176.067023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.481 5.481 3 C -0.371 4.371 4 H 0.096 0.904 5 C 0.052 3.948 6 N -0.876 5.876 7 Si 0.928 3.072 8 H -0.254 1.254 9 H -0.278 1.278 10 H -0.278 1.278 11 C 0.546 3.454 12 O -0.611 6.611 13 C -0.049 4.049 14 C -0.090 4.090 15 C -0.268 4.268 16 C 0.598 3.402 17 N -0.828 5.828 18 O -0.606 6.606 19 C 0.085 3.915 20 N -0.498 5.498 21 H 0.442 0.558 22 H 0.066 0.934 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.288 0.712 26 H 0.129 0.871 27 H 0.417 0.583 28 H 0.411 0.589 29 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.214 1.405 -0.179 8.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.202 5.202 3 C -0.498 4.498 4 H 0.114 0.886 5 C -0.157 4.157 6 N -0.510 5.510 7 Si 0.754 3.246 8 H -0.179 1.179 9 H -0.204 1.204 10 H -0.203 1.203 11 C 0.338 3.662 12 O -0.497 6.497 13 C -0.162 4.162 14 C -0.117 4.117 15 C -0.277 4.277 16 C 0.386 3.614 17 N -0.392 5.392 18 O -0.488 6.488 19 C -0.061 4.061 20 N -0.101 5.101 21 H 0.295 0.705 22 H 0.085 0.915 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.099 0.901 26 H 0.147 0.853 27 H 0.249 0.751 28 H 0.243 0.757 29 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 7.502 0.631 -0.242 7.532 hybrid contribution -0.603 0.552 -0.607 1.018 sum 6.899 1.183 -0.849 7.051 Atomic orbital electron populations 1.21906 0.81535 1.01446 1.02321 1.43543 1.05381 1.04999 1.66326 1.18903 1.22503 0.92254 1.16180 0.88650 1.25932 0.97034 0.94439 0.98295 1.69668 1.42550 1.02774 1.35963 0.86043 0.80344 0.78552 0.79642 1.17900 1.20427 1.20342 1.17851 0.86192 0.83740 0.78442 1.90664 1.69751 1.32567 1.56676 1.19821 0.90590 0.87692 1.18049 1.20949 0.92032 0.97183 1.01490 1.19524 0.92832 0.93610 1.21749 1.17443 0.83884 0.86026 0.74089 1.43355 1.06480 1.13017 1.76303 1.90758 1.87770 1.16795 1.53515 1.23271 0.88558 0.94653 0.99596 1.43650 1.05742 1.11036 1.49641 0.70470 0.91547 0.91789 0.91752 0.90150 0.85299 0.75128 0.75655 0.75374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.91 9.19 127.77 1.17 4.08 15 2 N -0.48 -22.40 2.36 -663.46 -1.56 -23.96 15 3 C -0.37 -17.15 7.12 84.09 0.60 -16.55 15 4 H 0.10 4.48 6.16 -2.91 -0.02 4.46 15 5 C 0.05 2.40 5.43 84.94 0.46 2.86 15 6 N -0.88 -41.07 13.96 21.67 0.30 -40.77 15 7 Si 0.93 38.32 25.03 68.60 1.72 40.04 15 8 H -0.25 -9.82 6.77 99.48 0.67 -9.14 15 9 H -0.28 -11.15 7.11 99.48 0.71 -10.44 15 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 15 11 C 0.55 26.63 7.60 86.45 0.66 27.29 15 12 O -0.61 -32.51 16.42 -4.42 -0.07 -32.59 15 13 C -0.05 -2.10 6.71 40.00 0.27 -1.83 15 14 C -0.09 -3.75 10.38 22.61 0.23 -3.51 15 15 C -0.27 -8.87 6.13 -20.12 -0.12 -8.99 15 16 C 0.60 18.45 8.09 86.65 0.70 19.15 15 17 N -0.83 -14.64 8.86 -175.90 -1.56 -16.20 15 18 O -0.61 -24.54 17.76 -4.08 -0.07 -24.61 15 19 C 0.08 2.29 11.43 84.31 0.96 3.25 15 20 N -0.50 -17.76 5.27 -183.32 -0.97 -18.72 15 21 H 0.44 16.44 5.02 -92.71 -0.47 15.97 15 22 H 0.07 2.50 8.14 -2.39 -0.02 2.48 15 23 H 0.06 2.54 4.14 -2.39 -0.01 2.53 15 24 H 0.06 2.66 7.37 -2.39 -0.02 2.64 15 25 H 0.29 12.65 8.31 -92.71 -0.77 11.88 15 26 H 0.13 5.72 8.06 -2.91 -0.02 5.69 15 27 H 0.42 4.23 7.74 -92.71 -0.72 3.51 15 28 H 0.41 5.89 8.93 -92.71 -0.83 5.07 15 29 H 0.23 3.16 7.44 -2.91 -0.02 3.14 15 Total: -1.00 -66.93 254.02 1.92 -65.01 By element: Atomic # 1 Polarization: 26.85 SS G_CDS: -0.80 Total: 26.05 kcal Atomic # 6 Polarization: 20.81 SS G_CDS: 4.93 Total: 25.75 kcal Atomic # 7 Polarization: -95.87 SS G_CDS: -3.79 Total: -99.65 kcal Atomic # 8 Polarization: -57.05 SS G_CDS: -0.15 Total: -57.20 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 1.72 Total: 40.04 kcal Total: -66.93 1.92 -65.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318936330.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.580 kcal (2) G-P(sol) polarization free energy of solvation -66.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds