Wall clock time and date at job start Thu Apr 9 2020 12:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36204 * 120.04240 * 2 1 4 4 C 1.41020 * 118.59033 * 180.26225 * 3 2 1 5 5 O 1.21983 * 120.71127 * 179.72410 * 4 3 2 6 6 N 1.35027 * 118.58095 * 359.45433 * 4 3 2 7 7 C 1.46507 * 120.03962 * 180.25035 * 6 4 3 8 8 C 1.50700 * 109.46846 * 90.00089 * 7 6 4 9 9 O 1.21289 * 119.99920 * 359.97438 * 8 7 6 10 10 N 1.34782 * 119.99801 * 179.97438 * 8 7 6 11 11 C 1.37089 * 119.99844 * 179.97438 * 10 8 7 12 12 H 1.07997 * 120.00679 * 0.02562 * 11 10 8 13 13 C 1.38956 * 119.99998 * 179.97438 * 11 10 8 14 14 N 1.31413 * 119.99719 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00146 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47112 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46878 * 120.00180 * 15 13 11 18 18 H 1.48496 * 109.47173 * 240.00131 * 15 13 11 19 19 C 1.34743 * 119.91759 * 0.27585 * 6 4 3 20 20 N 1.30639 * 121.49197 * 359.97438 * 19 6 4 21 21 H 1.09008 * 109.47007 * 180.28445 * 1 2 3 22 22 H 1.08997 * 109.47811 * 300.29000 * 1 2 3 23 23 H 1.09007 * 109.46736 * 60.29314 * 1 2 3 24 24 H 1.07997 * 120.70573 * 0.02562 * 3 2 1 25 25 H 1.08998 * 109.46682 * 209.99754 * 7 6 4 26 26 H 1.08994 * 109.47095 * 330.00057 * 7 6 4 27 27 H 0.97001 * 119.99317 * 0.02562 * 10 8 7 28 28 H 0.96998 * 119.99879 * 179.97438 * 14 13 11 29 29 H 1.07998 * 119.25290 * 180.02562 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1889 1.1791 0.0000 4 6 3.5986 1.1433 -0.0057 5 8 4.2480 2.1760 -0.0109 6 7 4.2144 -0.0584 0.0004 7 6 5.6776 -0.1327 0.0004 8 6 6.1796 -0.1508 1.4211 9 8 5.3927 -0.1055 2.3430 10 7 7.5031 -0.2173 1.6674 11 6 7.9599 -0.2332 2.9599 12 1 7.2593 -0.1929 3.7808 13 6 9.3243 -0.3023 3.2138 14 7 10.1768 -0.3518 2.2149 15 14 9.9467 -0.3247 4.9749 16 1 8.7935 -0.2606 5.9083 17 1 10.7081 -1.5768 5.2148 18 1 10.8332 0.8449 5.2015 19 6 3.4815 -1.1890 0.0061 20 7 2.1755 -1.1557 0.0063 21 1 -0.3633 -1.0277 0.0051 22 1 -0.3634 0.5183 0.8873 23 1 -0.3633 0.5093 -0.8927 24 1 1.6612 2.1213 0.0004 25 1 5.9950 -1.0427 -0.5088 26 1 6.0854 0.7349 -0.5181 27 1 8.1323 -0.2531 0.9300 28 1 11.1292 -0.3997 2.3921 29 1 3.9851 -2.1444 0.0113 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319803983.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:05:04 Heat of formation + Delta-G solvation = -30.853202 kcal Electronic energy + Delta-G solvation = -16295.341032 eV Core-core repulsion = 13412.145830 eV Total energy + Delta-G solvation = -2883.195202 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.090 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.56960 -38.31216 -37.37506 -35.35594 -34.03400 -31.62753 -31.36776 -29.43952 -27.28130 -24.78117 -24.33928 -22.04480 -19.78409 -18.24692 -18.13297 -16.91705 -16.62815 -16.20747 -15.22150 -14.55268 -14.34017 -14.21547 -14.07010 -13.70163 -13.56022 -12.79526 -12.72082 -12.35686 -12.24386 -11.84456 -11.67051 -11.15390 -10.43114 -10.37977 -10.25897 -9.96263 -9.80754 -9.67856 -8.67694 -8.18799 -8.14049 -6.55533 -3.97033 0.81241 2.09939 2.66047 3.07764 3.21070 3.28394 3.63843 3.80732 4.07948 4.10785 4.60559 4.72929 4.83859 4.99962 5.20422 5.37175 5.39944 5.47045 5.63503 5.72359 5.80828 5.96217 6.10896 6.52562 6.84455 7.43282 7.87183 7.94468 8.13969 8.41008 9.01583 9.32904 9.81874 10.61359 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.049938 B = 0.005427 C = 0.005338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.560214 B = 5157.893242 C = 5243.940523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.175 3.825 3 C -0.297 4.297 4 C 0.524 3.476 5 O -0.538 6.538 6 N -0.494 5.494 7 C 0.074 3.926 8 C 0.422 3.578 9 O -0.586 6.586 10 N -0.548 5.548 11 C -0.302 4.302 12 H 0.105 0.895 13 C 0.026 3.974 14 N -0.895 5.895 15 Si 0.932 3.068 16 H -0.267 1.267 17 H -0.280 1.280 18 H -0.280 1.280 19 C 0.394 3.606 20 N -0.551 5.551 21 H 0.079 0.921 22 H 0.081 0.919 23 H 0.080 0.920 24 H 0.150 0.850 25 H 0.113 0.887 26 H 0.118 0.882 27 H 0.395 0.605 28 H 0.274 0.726 29 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.276 -3.073 -7.545 13.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.054 3.946 3 C -0.322 4.322 4 C 0.324 3.676 5 O -0.416 6.416 6 N -0.209 5.209 7 C -0.052 4.052 8 C 0.206 3.794 9 O -0.471 6.471 10 N -0.183 5.183 11 C -0.432 4.432 12 H 0.123 0.877 13 C -0.177 4.177 14 N -0.535 5.535 15 Si 0.759 3.241 16 H -0.191 1.191 17 H -0.206 1.206 18 H -0.205 1.205 19 C 0.110 3.890 20 N -0.275 5.275 21 H 0.098 0.902 22 H 0.100 0.900 23 H 0.099 0.901 24 H 0.167 0.833 25 H 0.131 0.869 26 H 0.136 0.864 27 H 0.229 0.771 28 H 0.084 0.916 29 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -11.703 -2.950 -6.922 13.913 hybrid contribution 1.360 0.683 0.477 1.595 sum -10.343 -2.266 -6.445 12.396 Atomic orbital electron populations 1.20753 0.88378 1.04141 1.03033 1.21138 0.97240 0.87993 0.88190 1.22592 0.92701 1.00628 1.16292 1.17210 0.89372 0.82665 0.78392 1.90935 1.67675 1.31293 1.51686 1.46321 1.09441 1.08436 1.56704 1.21840 0.77828 1.06014 0.99521 1.19756 0.84012 0.86303 0.89296 1.90580 1.55168 1.56292 1.45074 1.41769 1.04560 1.62698 1.09277 1.19773 0.91560 1.47859 0.83982 0.87703 1.25316 0.95639 0.96730 0.99967 1.69611 1.03213 1.49341 1.31380 0.85752 0.78891 0.77853 0.81597 1.19124 1.20554 1.20549 1.24886 0.88038 0.91303 0.84769 1.68254 1.05497 1.28616 1.25145 0.90181 0.90004 0.90097 0.83275 0.86950 0.86441 0.77142 0.91616 0.78194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 10.16 36.01 0.37 -0.63 15 2 C 0.17 2.41 6.77 -82.59 -0.56 1.85 15 3 C -0.30 -4.72 9.75 -39.26 -0.38 -5.10 15 4 C 0.52 10.12 7.45 -15.09 -0.11 10.01 15 5 O -0.54 -12.35 16.78 4.93 0.08 -12.27 15 6 N -0.49 -8.39 2.06 -122.40 -0.25 -8.64 15 7 C 0.07 1.25 5.86 -5.19 -0.03 1.22 15 8 C 0.42 9.71 7.85 -10.98 -0.09 9.63 15 9 O -0.59 -15.94 16.01 5.55 0.09 -15.85 15 10 N -0.55 -13.41 5.29 -10.96 -0.06 -13.47 15 11 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 15 12 H 0.11 3.04 7.16 -52.49 -0.38 2.67 15 13 C 0.03 0.69 5.50 -17.47 -0.10 0.59 15 14 N -0.90 -23.60 13.05 55.50 0.72 -22.88 15 15 Si 0.93 20.67 29.55 -169.99 -5.02 15.65 15 16 H -0.27 -5.97 7.11 56.52 0.40 -5.57 15 17 H -0.28 -6.05 7.11 56.52 0.40 -5.65 15 18 H -0.28 -6.14 7.11 56.52 0.40 -5.74 15 19 C 0.39 5.53 11.48 -90.53 -1.04 4.49 15 20 N -0.55 -7.87 10.31 -10.70 -0.11 -7.98 15 21 H 0.08 0.71 8.12 -51.92 -0.42 0.29 15 22 H 0.08 0.69 8.14 -51.93 -0.42 0.27 15 23 H 0.08 0.61 8.14 -51.93 -0.42 0.19 15 24 H 0.15 2.09 8.06 -52.49 -0.42 1.66 15 25 H 0.11 1.32 8.02 -51.93 -0.42 0.90 15 26 H 0.12 1.97 7.46 -51.93 -0.39 1.58 15 27 H 0.39 9.04 7.90 -40.82 -0.32 8.72 15 28 H 0.27 6.81 8.31 -40.82 -0.34 6.47 15 29 H 0.20 1.98 8.03 -52.49 -0.42 1.56 15 LS Contribution 268.18 15.07 4.04 4.04 Total: -1.00 -35.08 268.18 -5.34 -40.41 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -2.75 Total: 7.35 kcal Atomic # 6 Polarization: 15.72 SS G_CDS: -2.08 Total: 13.64 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: 0.30 Total: -52.97 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: 0.17 Total: -28.12 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -35.08 -5.34 -40.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319803983.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.561 kcal (2) G-P(sol) polarization free energy of solvation -35.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds