Wall clock time and date at job start Thu Apr 9 2020 12:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30677 * 1 3 3 Si 1.86796 * 120.00409 * 2 1 4 4 H 1.48500 * 109.47342 * 269.99981 * 3 2 1 5 5 H 1.48502 * 109.47034 * 29.99842 * 3 2 1 6 6 H 1.48497 * 109.47130 * 149.99860 * 3 2 1 7 7 C 1.40049 * 119.99559 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99854 * 180.02562 * 7 2 1 9 9 C 1.46375 * 120.00173 * 0.02562 * 7 2 1 10 10 O 1.21682 * 120.00010 * 0.02562 * 9 7 2 11 11 N 1.34777 * 120.00030 * 179.97438 * 9 7 2 12 12 C 1.47431 * 125.64789 * 359.95976 * 11 9 7 13 13 C 1.55392 * 104.87127 * 204.16802 * 12 11 9 14 14 C 1.55157 * 101.36576 * 323.01456 * 13 12 11 15 15 C 1.47019 * 125.65068 * 179.97438 * 11 9 7 16 16 H 1.08999 * 110.01246 * 59.41302 * 15 11 9 17 17 C 1.50704 * 109.88382 * 298.32505 * 15 11 9 18 18 N 1.34491 * 126.28804 * 137.18830 * 17 15 11 19 19 C 1.31137 * 105.61104 * 179.97438 * 18 17 15 20 20 O 1.33638 * 106.89850 * 359.97438 * 19 18 17 21 21 N 1.21298 * 109.81281 * 359.73863 * 20 19 18 22 22 H 0.97005 * 119.99338 * 0.02562 * 1 2 3 23 23 H 1.08999 * 110.36190 * 322.99854 * 12 11 9 24 24 H 1.08998 * 110.36491 * 85.21533 * 12 11 9 25 25 H 1.09004 * 111.18705 * 204.97719 * 13 12 11 26 26 H 1.09001 * 111.02055 * 80.98222 * 13 12 11 27 27 H 1.09002 * 110.72219 * 277.04408 * 14 13 12 28 28 H 1.09003 * 110.71618 * 153.95021 * 14 13 12 29 29 H 1.07996 * 126.54738 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6176 0.0000 4 1 2.4884 2.0463 -1.4001 5 1 1.4383 2.6526 0.7000 6 1 3.5384 1.4400 0.7001 7 6 2.0069 -1.2129 0.0005 8 1 3.0870 -1.2130 0.0010 9 6 1.2750 -2.4805 0.0005 10 8 0.0582 -2.4805 -0.0004 11 7 1.9488 -3.6478 0.0005 12 6 3.4160 -3.7929 -0.0003 13 6 3.6775 -5.1960 -0.6149 14 6 2.4959 -6.0122 -0.0276 15 6 1.3426 -4.9871 0.0011 16 1 0.7137 -5.1123 -0.8803 17 6 0.5191 -5.1765 1.2490 18 7 -0.6983 -5.7435 1.3208 19 6 -1.0342 -5.6988 2.5876 20 8 -0.0232 -5.1141 3.2372 21 7 0.8578 -4.8280 2.4541 22 1 -0.4849 0.8401 -0.0004 23 1 3.8734 -3.0184 -0.6159 24 1 3.8024 -3.7451 1.0177 25 1 4.6342 -5.5994 -0.2828 26 1 3.6262 -5.1619 -1.7031 27 1 2.7289 -6.3582 0.9794 28 1 2.2486 -6.8533 -0.6753 29 1 -1.9522 -6.0653 3.0229 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329070054.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:05:36 Heat of formation + Delta-G solvation = 8.251476 kcal Electronic energy + Delta-G solvation = -17048.996487 eV Core-core repulsion = 14167.496991 eV Total energy + Delta-G solvation = -2881.499496 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.090 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -46.53182 -40.39949 -37.81320 -36.53198 -34.71346 -33.36697 -32.19108 -30.25378 -28.27438 -25.36664 -24.91759 -23.58082 -22.20462 -20.90871 -19.09456 -18.94233 -18.42721 -17.77400 -17.03059 -16.46530 -16.05486 -15.56205 -14.69442 -14.65206 -14.25783 -13.78297 -13.46511 -13.22084 -13.13073 -12.95203 -12.76105 -12.56158 -12.31821 -12.09004 -12.02605 -11.93706 -11.69054 -11.02568 -10.96260 -9.93096 -9.30174 -8.36298 -6.92474 0.39308 1.31154 1.35445 1.37507 1.52699 2.18113 2.26867 2.38825 2.67161 2.88750 3.37069 3.54267 3.67246 3.81018 4.02800 4.27666 4.43141 4.63649 4.78062 4.81314 4.91677 5.00643 5.03934 5.15333 5.26164 5.31881 5.54300 5.95170 6.29016 6.79690 7.32549 7.38839 8.37936 8.59824 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.026284 B = 0.009133 C = 0.007482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.031543 B = 3065.220281 C = 3741.454492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.027 3.973 3 Si 1.000 3.000 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.249 1.249 7 C -0.564 4.564 8 H 0.088 0.912 9 C 0.555 3.445 10 O -0.625 6.625 11 N -0.641 5.641 12 C 0.106 3.894 13 C -0.113 4.113 14 C -0.105 4.105 15 C 0.216 3.784 16 H 0.067 0.933 17 C 0.165 3.835 18 N -0.518 5.518 19 C 0.168 3.832 20 O 0.069 5.931 21 N -0.400 5.400 22 H 0.275 0.725 23 H 0.072 0.928 24 H 0.048 0.952 25 H 0.118 0.882 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.111 0.889 29 H 0.321 0.679 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.623 -10.938 2.904 12.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.188 4.188 3 Si 0.819 3.181 4 H -0.181 1.181 5 H -0.197 1.197 6 H -0.172 1.172 7 C -0.600 4.600 8 H 0.106 0.894 9 C 0.362 3.638 10 O -0.512 6.512 11 N -0.378 5.378 12 C -0.017 4.017 13 C -0.150 4.150 14 C -0.144 4.144 15 C 0.109 3.891 16 H 0.085 0.915 17 C -0.109 4.109 18 N -0.251 5.251 19 C -0.071 4.071 20 O 0.011 5.989 21 N -0.108 5.108 22 H 0.084 0.916 23 H 0.091 0.909 24 H 0.067 0.933 25 H 0.136 0.864 26 H 0.105 0.895 27 H 0.093 0.907 28 H 0.129 0.871 29 H 0.335 0.665 Dipole moment (debyes) X Y Z Total from point charges 5.478 -10.479 2.647 12.117 hybrid contribution -0.611 0.855 0.206 1.071 sum 4.867 -9.624 2.852 11.155 Atomic orbital electron populations 1.70207 1.09622 1.28988 1.36364 1.27048 0.95570 1.05064 0.91099 0.84987 0.78711 0.74746 0.79675 1.18124 1.19734 1.17208 1.21398 0.94644 0.89538 1.54446 0.89417 1.18433 0.86399 0.83081 0.75875 1.90562 1.16067 1.87081 1.57473 1.48669 1.07328 1.03220 1.78627 1.22318 0.80378 0.98982 0.99992 1.22888 0.98811 0.92157 1.01178 1.22631 0.92445 0.96407 1.02874 1.19769 0.94027 0.86499 0.88767 0.91511 1.26474 0.91883 0.96730 0.95782 1.71750 1.11291 1.22051 1.19995 1.31615 0.97173 0.92130 0.86208 1.85210 1.22072 1.55977 1.35678 1.74530 1.13145 1.20324 1.02846 0.91558 0.90941 0.93329 0.86422 0.89482 0.90749 0.87109 0.66508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -52.03 11.83 21.84 0.26 -51.78 15 2 C 0.03 1.56 5.50 85.30 0.47 2.03 15 3 Si 1.00 42.14 29.56 68.60 2.03 44.17 15 4 H -0.26 -10.17 7.11 99.48 0.71 -9.46 15 5 H -0.27 -11.09 7.11 99.48 0.71 -10.38 15 6 H -0.25 -9.76 7.11 99.48 0.71 -9.06 15 7 C -0.56 -33.35 8.98 24.83 0.22 -33.12 15 8 H 0.09 4.68 6.64 -2.91 -0.02 4.66 15 9 C 0.56 34.05 7.57 86.36 0.65 34.71 15 10 O -0.63 -43.99 14.86 -4.29 -0.06 -44.06 15 11 N -0.64 -31.22 3.05 -796.26 -2.43 -33.65 15 12 C 0.11 3.92 6.53 87.02 0.57 4.49 15 13 C -0.11 -2.85 7.12 32.16 0.23 -2.63 15 14 C -0.10 -2.99 6.45 31.78 0.21 -2.78 15 15 C 0.22 9.12 3.40 44.60 0.15 9.27 15 16 H 0.07 3.02 8.14 -2.39 -0.02 3.00 15 17 C 0.17 7.21 6.16 138.46 0.85 8.07 15 18 N -0.52 -20.20 11.55 -315.39 -3.64 -23.84 15 19 C 0.17 4.82 13.40 130.51 1.75 6.57 15 20 O 0.07 2.45 11.31 74.89 0.85 3.30 15 21 N -0.40 -17.48 12.15 -60.40 -0.73 -18.21 15 22 H 0.27 15.70 8.29 -92.70 -0.77 14.94 15 23 H 0.07 2.67 7.14 -2.39 -0.02 2.65 15 24 H 0.05 1.79 8.14 -2.39 -0.02 1.77 15 25 H 0.12 2.11 8.14 -2.39 -0.02 2.09 15 26 H 0.09 2.04 8.14 -2.39 -0.02 2.02 15 27 H 0.07 2.09 7.84 -2.39 -0.02 2.07 15 28 H 0.11 2.48 8.14 -2.39 -0.02 2.46 15 29 H 0.32 3.90 8.06 -2.91 -0.02 3.88 15 Total: -1.00 -89.36 259.44 2.54 -86.82 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: 1.18 Total: 10.64 kcal Atomic # 6 Polarization: 21.50 SS G_CDS: 5.10 Total: 26.60 kcal Atomic # 7 Polarization: -120.93 SS G_CDS: -6.55 Total: -127.47 kcal Atomic # 8 Polarization: -41.54 SS G_CDS: 0.78 Total: -40.76 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -89.36 2.54 -86.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329070054.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.072 kcal (2) G-P(sol) polarization free energy of solvation -89.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds