Wall clock time and date at job start Thu Apr 9 2020 12:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47024 * 246.62728 * 3 2 1 5 5 C 1.37101 * 120.00307 * 90.84167 * 4 3 2 6 6 H 1.08001 * 119.99900 * 158.98686 * 5 4 3 7 7 C 1.38948 * 119.99751 * 338.99248 * 5 4 3 8 8 N 1.31410 * 120.00208 * 336.67748 * 7 5 4 9 9 Si 1.86802 * 119.99595 * 156.39885 * 7 5 4 10 10 H 1.48492 * 109.47438 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.46834 * 120.00066 * 9 7 5 12 12 H 1.48501 * 109.46941 * 239.99755 * 9 7 5 13 13 C 1.34784 * 120.00038 * 270.84612 * 4 3 2 14 14 O 1.21287 * 119.99984 * 185.01004 * 13 4 3 15 15 C 1.50701 * 119.99689 * 5.01336 * 13 4 3 16 16 H 1.08999 * 110.43793 * 31.64102 * 15 13 4 17 17 C 1.54631 * 110.48553 * 268.95371 * 15 13 4 18 18 C 1.54479 * 101.76545 * 266.12221 * 17 15 13 19 19 N 1.46754 * 105.47456 * 334.58306 * 18 17 15 20 20 C 1.34425 * 111.29989 * 17.01704 * 19 18 17 21 21 O 1.21282 * 124.93748 * 179.55672 * 20 19 18 22 22 H 1.09005 * 109.46685 * 126.62704 * 3 2 1 23 23 H 1.09001 * 109.47122 * 6.62717 * 3 2 1 24 24 H 0.96998 * 120.00115 * 180.02562 * 8 7 5 25 25 H 1.09009 * 110.96716 * 24.24224 * 17 15 13 26 26 H 1.09003 * 110.97142 * 148.00296 * 17 15 13 27 27 H 1.08999 * 110.24301 * 215.58013 * 18 17 15 28 28 H 1.09004 * 110.31849 * 93.62148 * 18 17 15 29 29 H 0.96995 * 124.35106 * 197.03602 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0961 0.5488 1.2678 5 6 3.3414 -0.2867 2.3268 6 1 3.9999 0.0290 3.1225 7 6 2.7429 -1.5397 2.3762 8 7 1.6330 -1.7646 1.7095 9 14 3.5203 -2.9069 3.3841 10 1 4.7593 -2.4032 4.0293 11 1 2.5652 -3.3562 4.4287 12 1 3.8547 -4.0485 2.4951 13 6 3.3039 1.8746 1.3934 14 8 3.7932 2.3181 2.4106 15 6 2.9280 2.8058 0.2697 16 1 2.0638 2.4204 -0.2712 17 6 4.1243 3.0075 -0.6891 18 6 4.7718 4.2892 -0.1197 19 7 3.6891 5.0027 0.5676 20 6 2.6431 4.1922 0.8038 21 8 1.6200 4.5240 1.3644 22 1 2.9710 0.6140 -0.8248 23 1 2.9718 -1.0200 -0.1186 24 1 1.2150 -2.6392 1.7443 25 1 4.8139 2.1649 -0.6350 26 1 3.7823 3.1645 -1.7121 27 1 5.1726 4.9005 -0.9283 28 1 5.5621 4.0328 0.5859 29 1 3.7237 5.9389 0.8188 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330239129.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:05:42 Heat of formation + Delta-G solvation = -26.743336 kcal Electronic energy + Delta-G solvation = -17042.431848 eV Core-core repulsion = 14159.414863 eV Total energy + Delta-G solvation = -2883.016985 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.090 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.43715 -38.24223 -36.01731 -35.69057 -34.23345 -32.17537 -30.96790 -27.77345 -27.37935 -24.95019 -22.11663 -21.09316 -18.86683 -17.97930 -17.19109 -16.97333 -16.26324 -15.43400 -14.74059 -14.47121 -14.13787 -13.78060 -13.32384 -13.13338 -12.99625 -12.73465 -12.43504 -12.00480 -11.63795 -11.46391 -11.29916 -11.14614 -11.04873 -10.58138 -10.44793 -10.36012 -9.54616 -9.31093 -8.91242 -8.67032 -8.07710 -6.53971 -4.06367 2.87328 3.05717 3.20937 3.27254 3.43915 3.61412 3.78794 4.02225 4.13951 4.54869 4.68824 4.69790 4.89772 5.01733 5.19166 5.29688 5.54294 5.61985 5.73190 5.90545 5.98833 6.05061 6.32651 7.04591 7.22447 7.44234 7.82225 8.20593 8.56626 8.85162 8.92664 9.11991 9.63261 10.50819 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.030779 B = 0.008760 C = 0.007852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.485367 B = 3195.735100 C = 3565.308230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C 0.240 3.760 3 C 0.223 3.777 4 N -0.437 5.437 5 C -0.319 4.319 6 H 0.110 0.890 7 C 0.034 3.966 8 N -0.868 5.868 9 Si 0.927 3.073 10 H -0.266 1.266 11 H -0.282 1.282 12 H -0.278 1.278 13 C 0.478 3.522 14 O -0.562 6.562 15 C -0.149 4.149 16 H 0.113 0.887 17 C -0.124 4.124 18 C 0.107 3.893 19 N -0.730 5.730 20 C 0.550 3.450 21 O -0.528 6.528 22 H 0.086 0.914 23 H 0.118 0.882 24 H 0.274 0.726 25 H 0.097 0.903 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.908 5.109 -9.064 13.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.144 5.144 2 C -0.078 4.078 3 C 0.095 3.905 4 N -0.157 5.157 5 C -0.446 4.446 6 H 0.127 0.873 7 C -0.170 4.170 8 N -0.505 5.505 9 Si 0.753 3.247 10 H -0.190 1.190 11 H -0.208 1.208 12 H -0.204 1.204 13 C 0.265 3.735 14 O -0.444 6.444 15 C -0.174 4.174 16 H 0.131 0.869 17 C -0.162 4.162 18 C -0.018 4.018 19 N -0.386 5.386 20 C 0.335 3.665 21 O -0.403 6.403 22 H 0.104 0.896 23 H 0.135 0.865 24 H 0.085 0.915 25 H 0.115 0.885 26 H 0.107 0.893 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 6.812 5.190 -8.293 11.921 hybrid contribution 0.563 -0.547 0.591 0.982 sum 7.374 4.643 -7.702 11.630 Atomic orbital electron populations 1.80872 1.13535 1.10501 1.09497 1.29002 0.95209 0.91651 0.91944 1.18688 0.82232 1.02303 0.87250 1.43569 1.56884 1.04483 1.10745 1.19720 1.27295 0.95007 1.02565 0.87261 1.25330 0.94197 0.99496 0.98007 1.69765 1.14278 1.23800 1.42674 0.85850 0.79485 0.80090 0.79238 1.19006 1.20845 1.20398 1.19284 0.84631 0.82173 0.87458 1.90583 1.47403 1.75403 1.30977 1.22185 1.01234 0.95352 0.98623 0.86866 1.22639 0.96638 0.98532 0.98376 1.21997 0.90212 0.93154 0.96413 1.46021 1.17565 1.13305 1.61692 1.20132 0.82444 0.86641 0.77266 1.90729 1.28118 1.79381 1.42051 0.89568 0.86458 0.91481 0.88463 0.89336 0.90452 0.90672 0.75421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -11.37 18.54 42.15 0.78 -10.59 15 2 C 0.24 5.36 12.12 -20.76 -0.25 5.11 15 3 C 0.22 4.22 4.81 -6.83 -0.03 4.18 15 4 N -0.44 -9.97 2.58 -117.93 -0.30 -10.28 15 5 C -0.32 -8.12 9.26 -14.93 -0.14 -8.26 15 6 H 0.11 2.94 7.43 -52.49 -0.39 2.55 15 7 C 0.03 0.84 4.81 -17.47 -0.08 0.76 15 8 N -0.87 -22.05 9.44 55.50 0.52 -21.52 15 9 Si 0.93 19.37 29.61 -169.99 -5.03 14.34 15 10 H -0.27 -5.53 7.11 56.52 0.40 -5.13 15 11 H -0.28 -6.12 7.11 56.52 0.40 -5.71 15 12 H -0.28 -5.61 7.11 56.52 0.40 -5.21 15 13 C 0.48 10.76 6.65 -10.98 -0.07 10.68 15 14 O -0.56 -14.74 16.01 5.55 0.09 -14.65 15 15 C -0.15 -2.62 2.35 -91.78 -0.22 -2.84 15 16 H 0.11 1.97 6.36 -51.93 -0.33 1.64 15 17 C -0.12 -1.42 6.09 -25.10 -0.15 -1.58 15 18 C 0.11 1.17 7.78 -3.13 -0.02 1.14 15 19 N -0.73 -10.33 6.24 -59.21 -0.37 -10.70 15 20 C 0.55 10.62 7.19 -10.86 -0.08 10.54 15 21 O -0.53 -12.58 18.03 5.56 0.10 -12.48 15 22 H 0.09 1.18 6.35 -51.93 -0.33 0.85 15 23 H 0.12 2.18 7.09 -51.93 -0.37 1.81 15 24 H 0.27 6.76 8.31 -40.82 -0.34 6.42 15 25 H 0.10 1.03 7.89 -51.92 -0.41 0.62 15 26 H 0.09 0.75 8.14 -51.93 -0.42 0.32 15 27 H 0.08 0.56 8.14 -51.93 -0.42 0.14 15 28 H 0.08 0.87 8.14 -51.93 -0.42 0.45 15 29 H 0.41 4.83 8.96 -40.82 -0.37 4.46 15 LS Contribution 259.63 15.07 3.91 3.91 Total: -1.00 -35.07 259.63 -3.95 -39.02 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -2.60 Total: 3.21 kcal Atomic # 6 Polarization: 20.79 SS G_CDS: -1.05 Total: 19.74 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: 0.63 Total: -53.09 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: 0.19 Total: -27.13 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.03 Total: 14.34 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -35.07 -3.95 -39.02 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330239129.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.276 kcal (2) G-P(sol) polarization free energy of solvation -35.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds