Wall clock time and date at job start Thu Apr 9 2020 12:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00313 * 3 2 1 5 5 H 1.48494 * 109.46800 * 30.00360 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00063 * 3 2 1 7 7 C 1.38817 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99438 * 0.26604 * 7 2 1 9 9 N 1.36935 * 119.99990 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99938 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47276 * 180.02562 * 10 9 7 12 12 C 1.34929 * 125.49094 * 94.71745 * 11 10 9 13 13 N 1.36430 * 106.76319 * 179.88179 * 12 11 10 14 14 C 1.38985 * 126.86929 * 180.13465 * 13 12 11 15 15 N 1.27742 * 125.77718 * 0.28810 * 14 13 12 16 16 O 1.41383 * 113.15238 * 179.65263 * 15 14 13 17 17 C 1.44252 * 107.50989 * 17.37838 * 16 15 14 18 18 C 1.51687 * 125.77249 * 179.97438 * 14 13 12 19 19 N 1.40325 * 106.25926 * 0.37184 * 13 12 11 20 20 N 1.28770 * 108.00654 * 359.76627 * 19 13 12 21 21 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 22 22 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 23 23 H 1.09004 * 109.47024 * 300.00223 * 10 9 7 24 24 H 1.09005 * 109.47136 * 59.99839 * 10 9 7 25 25 H 1.07996 * 126.61364 * 0.02562 * 12 11 10 26 26 H 1.08992 * 111.01080 * 92.94427 * 17 16 15 27 27 H 1.09007 * 111.00682 * 216.76279 * 17 16 15 28 28 H 1.09000 * 110.80763 * 282.98008 * 18 14 13 29 29 H 1.08999 * 110.80920 * 46.49016 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1374 -0.0053 9 7 3.3796 -1.2022 -0.0011 10 6 4.1120 -2.4710 -0.0011 11 6 5.5936 -2.1957 -0.0011 12 6 6.3803 -2.1414 1.0938 13 7 7.6445 -1.8726 0.6570 14 6 8.7844 -1.7301 1.4394 15 7 8.8349 -1.8343 2.7115 16 8 10.1355 -1.6467 3.2334 17 6 10.9222 -0.9954 2.2147 18 6 10.1803 -1.4313 0.9264 19 7 7.5628 -1.7633 -0.7396 20 7 6.3376 -1.9606 -1.0832 21 1 -0.4850 0.8401 0.0004 22 1 3.8646 -0.3622 -0.0014 23 1 3.8490 -3.0424 0.8892 24 1 3.8483 -3.0428 -0.8908 25 1 6.0696 -2.2855 2.1180 26 1 10.8993 0.0875 2.3361 27 1 11.9476 -1.3651 2.2169 28 1 10.6351 -2.3247 0.4986 29 1 10.1601 -0.6197 0.1991 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339306271.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:06 Heat of formation + Delta-G solvation = 153.110547 kcal Electronic energy + Delta-G solvation = -15914.825754 eV Core-core repulsion = 13071.900570 eV Total energy + Delta-G solvation = -2842.925184 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.097 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.41197 -40.52445 -35.68024 -34.81172 -32.05890 -31.87851 -31.21261 -30.22447 -26.21766 -24.61366 -23.93686 -22.28764 -21.33567 -20.25759 -18.24684 -17.56858 -17.20886 -16.35647 -15.75392 -15.16209 -14.62217 -14.51108 -14.10523 -13.66341 -13.32546 -12.95692 -12.75054 -12.59345 -12.40709 -11.88847 -11.43417 -11.37832 -11.11236 -11.05419 -10.86499 -10.21059 -9.76936 -9.62747 -9.11478 -8.95048 -7.29719 -5.79346 -3.16184 0.31375 1.25303 1.90330 2.39409 2.82954 3.37026 3.39941 3.41292 3.45159 3.90890 4.11302 4.31697 4.57762 4.59051 4.69561 4.88497 4.98289 5.01590 5.03528 5.26918 5.52213 5.62176 5.88527 6.30440 6.39715 6.50493 6.74598 7.93578 7.94560 8.38726 9.15703 9.88212 10.06877 11.38497 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.037816 B = 0.005320 C = 0.005096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.249047 B = 5262.283023 C = 5493.269397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.009 3.991 3 Si 0.883 3.117 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.247 4.247 8 H 0.095 0.905 9 N -0.750 5.750 10 C 0.234 3.766 11 C -0.028 4.028 12 C 0.059 3.941 13 N -0.323 5.323 14 C 0.322 3.678 15 N -0.300 5.300 16 O -0.174 6.174 17 C 0.014 3.986 18 C -0.138 4.138 19 N -0.051 5.051 20 N -0.191 5.191 21 H 0.260 0.740 22 H 0.362 0.638 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.205 0.795 26 H 0.087 0.913 27 H 0.117 0.883 28 H 0.116 0.884 29 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.509 -3.409 3.302 23.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.187 4.187 3 Si 0.714 3.286 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.376 4.376 8 H 0.113 0.887 9 N -0.397 5.397 10 C 0.105 3.895 11 C -0.162 4.162 12 C -0.089 4.089 13 N -0.112 5.112 14 C 0.041 3.959 15 N -0.047 5.047 16 O -0.192 6.192 17 C -0.064 4.064 18 C -0.178 4.178 19 N -0.030 5.030 20 N -0.065 5.065 21 H 0.071 0.929 22 H 0.195 0.805 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.222 0.778 26 H 0.105 0.895 27 H 0.135 0.865 28 H 0.134 0.866 29 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 22.593 -3.479 3.149 23.075 hybrid contribution 0.685 1.370 0.225 1.548 sum 23.278 -2.110 3.374 23.616 Atomic orbital electron populations 1.69693 1.05028 1.25913 1.57169 1.24636 0.95195 0.97142 1.01757 0.86571 0.79070 0.85089 0.77908 1.20915 1.21608 1.20626 1.19022 0.80047 0.94975 1.43552 0.88743 1.42668 1.04051 1.01631 1.91337 1.19065 0.79465 0.90148 1.00801 1.22304 0.99614 1.07383 0.86929 1.23694 0.82564 1.00160 1.02506 1.46908 1.04617 1.51735 1.07892 1.22068 0.87759 0.96095 0.90007 1.78115 1.01414 1.16607 1.08576 1.91328 1.14983 1.78590 1.34322 1.24272 0.97453 0.99604 0.85024 1.23031 0.87786 1.05827 1.01185 1.82238 1.13475 1.22483 0.84794 1.74343 0.97519 1.08421 1.26195 0.92950 0.80503 0.93041 0.92907 0.77849 0.89481 0.86526 0.86559 0.86537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.05 13.97 55.49 0.78 -28.27 15 2 C 0.01 0.26 5.50 -17.43 -0.10 0.16 15 3 Si 0.88 22.40 27.73 -169.99 -4.71 17.69 15 4 H -0.28 -7.18 7.11 56.52 0.40 -6.78 15 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 15 6 H -0.28 -6.77 6.52 56.52 0.37 -6.40 15 7 C -0.25 -6.89 10.47 -15.06 -0.16 -7.05 15 8 H 0.09 2.77 8.06 -52.49 -0.42 2.35 15 9 N -0.75 -17.82 5.40 -61.08 -0.33 -18.15 15 10 C 0.23 4.41 6.78 -5.20 -0.04 4.38 15 11 C -0.03 -0.48 6.47 -83.08 -0.54 -1.02 15 12 C 0.06 0.85 11.36 -16.68 -0.19 0.66 15 13 N -0.32 -4.49 3.82 -9.62 -0.04 -4.53 15 14 C 0.32 3.76 8.14 -153.42 -1.25 2.51 15 15 N -0.30 -3.81 12.30 33.18 0.41 -3.40 15 16 O -0.17 -1.93 12.52 -11.37 -0.14 -2.07 15 17 C 0.01 0.09 8.25 38.17 0.31 0.41 15 18 C -0.14 -1.02 7.04 -26.38 -0.19 -1.21 15 19 N -0.05 -0.79 13.72 60.35 0.83 0.04 15 20 N -0.19 -3.35 12.33 33.15 0.41 -2.94 15 21 H 0.26 7.74 8.31 -40.82 -0.34 7.40 15 22 H 0.36 8.68 5.52 -40.82 -0.23 8.45 15 23 H 0.05 0.89 8.14 -51.93 -0.42 0.47 15 24 H 0.05 1.01 8.14 -51.93 -0.42 0.59 15 25 H 0.20 2.42 8.06 -52.49 -0.42 2.00 15 26 H 0.09 0.48 8.14 -51.93 -0.42 0.05 15 27 H 0.12 0.41 8.14 -51.93 -0.42 -0.01 15 28 H 0.12 0.68 8.14 -51.93 -0.42 0.25 15 29 H 0.12 0.74 8.14 -51.93 -0.42 0.32 15 LS Contribution 265.33 15.07 4.00 4.00 Total: -1.00 -33.35 265.33 -3.72 -37.07 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -2.78 Total: 1.71 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -2.14 Total: -1.15 kcal Atomic # 7 Polarization: -59.30 SS G_CDS: 2.05 Total: -57.25 kcal Atomic # 8 Polarization: -1.93 SS G_CDS: -0.14 Total: -2.07 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.71 Total: 17.69 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -33.35 -3.72 -37.07 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339306271.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.176 kcal (2) G-P(sol) polarization free energy of solvation -33.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds