Wall clock time and date at job start Thu Apr 9 2020 12:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00313 * 3 2 1 5 5 H 1.48494 * 109.46800 * 30.00360 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00063 * 3 2 1 7 7 C 1.38817 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99438 * 0.26604 * 7 2 1 9 9 N 1.36935 * 119.99990 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99938 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47276 * 180.02562 * 10 9 7 12 12 C 1.34929 * 125.49094 * 94.71745 * 11 10 9 13 13 N 1.36430 * 106.76319 * 179.88179 * 12 11 10 14 14 C 1.38985 * 126.86929 * 180.13465 * 13 12 11 15 15 N 1.27742 * 125.77718 * 0.28810 * 14 13 12 16 16 O 1.41383 * 113.15238 * 179.65263 * 15 14 13 17 17 C 1.44252 * 107.50989 * 17.37838 * 16 15 14 18 18 C 1.51687 * 125.77249 * 179.97438 * 14 13 12 19 19 N 1.40325 * 106.25926 * 0.37184 * 13 12 11 20 20 N 1.28770 * 108.00654 * 359.76627 * 19 13 12 21 21 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 22 22 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 23 23 H 1.09004 * 109.47024 * 300.00223 * 10 9 7 24 24 H 1.09005 * 109.47136 * 59.99839 * 10 9 7 25 25 H 1.07996 * 126.61364 * 0.02562 * 12 11 10 26 26 H 1.08992 * 111.01080 * 92.94427 * 17 16 15 27 27 H 1.09007 * 111.00682 * 216.76279 * 17 16 15 28 28 H 1.09000 * 110.80763 * 282.98008 * 18 14 13 29 29 H 1.08999 * 110.80920 * 46.49016 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1374 -0.0053 9 7 3.3796 -1.2022 -0.0011 10 6 4.1120 -2.4710 -0.0011 11 6 5.5936 -2.1957 -0.0011 12 6 6.3803 -2.1414 1.0938 13 7 7.6445 -1.8726 0.6570 14 6 8.7844 -1.7301 1.4394 15 7 8.8349 -1.8343 2.7115 16 8 10.1355 -1.6467 3.2334 17 6 10.9222 -0.9954 2.2147 18 6 10.1803 -1.4313 0.9264 19 7 7.5628 -1.7633 -0.7396 20 7 6.3376 -1.9606 -1.0832 21 1 -0.4850 0.8401 0.0004 22 1 3.8646 -0.3622 -0.0014 23 1 3.8490 -3.0424 0.8892 24 1 3.8483 -3.0428 -0.8908 25 1 6.0696 -2.2855 2.1180 26 1 10.8993 0.0875 2.3361 27 1 11.9476 -1.3651 2.2169 28 1 10.6351 -2.3247 0.4986 29 1 10.1601 -0.6197 0.1991 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339306271.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:05 Heat of formation + Delta-G solvation = 128.579778 kcal Electronic energy + Delta-G solvation = -15915.889488 eV Core-core repulsion = 13071.900570 eV Total energy + Delta-G solvation = -2843.988918 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.097 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.57284 -41.31433 -37.11637 -36.20055 -33.90222 -32.84348 -32.10031 -31.65734 -27.81079 -25.76298 -24.72815 -24.04988 -22.48777 -21.42963 -19.89070 -18.84856 -17.99207 -17.29784 -16.76941 -16.44242 -16.29132 -16.07336 -15.10018 -14.95520 -14.54347 -14.35128 -14.14144 -13.67040 -13.50725 -13.17764 -13.01116 -12.85929 -12.42429 -12.16503 -12.14271 -12.00538 -11.82183 -11.03499 -10.71299 -10.24595 -9.33767 -8.02492 -5.36494 -0.72381 0.26005 0.93426 1.12087 1.35896 1.39370 1.45444 2.10031 2.47147 2.61533 3.08121 3.29077 3.37433 3.55313 3.61605 3.81034 3.86507 3.88620 4.09557 4.50469 4.54511 4.59254 4.63786 4.94082 4.94986 5.32067 5.75757 5.93806 6.20517 6.74957 7.04972 7.79070 7.97704 9.18433 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.037816 B = 0.005320 C = 0.005096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.249047 B = 5262.283023 C = 5493.269397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.058 4.058 3 Si 0.948 3.052 4 H -0.283 1.283 5 H -0.292 1.292 6 H -0.260 1.260 7 C -0.230 4.230 8 H 0.071 0.929 9 N -0.755 5.755 10 C 0.234 3.766 11 C -0.046 4.046 12 C 0.074 3.926 13 N -0.317 5.317 14 C 0.308 3.692 15 N -0.322 5.322 16 O -0.188 6.188 17 C 0.013 3.987 18 C -0.133 4.133 19 N -0.049 5.049 20 N -0.219 5.219 21 H 0.258 0.742 22 H 0.363 0.637 23 H 0.072 0.928 24 H 0.048 0.952 25 H 0.228 0.772 26 H 0.098 0.902 27 H 0.151 0.849 28 H 0.134 0.866 29 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.487 -2.963 3.907 25.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.629 5.629 2 C -0.250 4.250 3 Si 0.776 3.224 4 H -0.209 1.209 5 H -0.219 1.219 6 H -0.185 1.185 7 C -0.361 4.361 8 H 0.088 0.912 9 N -0.401 5.401 10 C 0.107 3.893 11 C -0.180 4.180 12 C -0.075 4.075 13 N -0.105 5.105 14 C 0.027 3.973 15 N -0.068 5.068 16 O -0.208 6.208 17 C -0.063 4.063 18 C -0.173 4.173 19 N -0.028 5.028 20 N -0.093 5.093 21 H 0.067 0.933 22 H 0.195 0.805 23 H 0.090 0.910 24 H 0.066 0.934 25 H 0.244 0.756 26 H 0.116 0.884 27 H 0.169 0.831 28 H 0.152 0.848 29 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 25.646 -3.059 3.754 26.099 hybrid contribution -0.113 1.119 0.096 1.129 sum 25.533 -1.940 3.851 25.894 Atomic orbital electron populations 1.69853 1.06838 1.26615 1.59612 1.25384 0.96000 1.00804 1.02772 0.85512 0.78459 0.80539 0.77846 1.20933 1.21871 1.18498 1.19044 0.81966 0.93956 1.41120 0.91155 1.42693 1.02684 1.03518 1.91180 1.19094 0.80714 0.88141 1.01353 1.21927 0.98686 1.09631 0.87770 1.23978 0.82516 0.98217 1.02810 1.46944 1.05219 1.50686 1.07621 1.22491 0.88422 0.96124 0.90220 1.78063 1.03016 1.16447 1.09240 1.91296 1.14579 1.79118 1.35760 1.24631 0.98309 1.00246 0.83126 1.23190 0.85192 1.07098 1.01860 1.82159 1.12613 1.22453 0.85609 1.74316 0.98303 1.09595 1.27047 0.93263 0.80491 0.90987 0.93355 0.75587 0.88382 0.83120 0.84767 0.85366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.32 13.97 21.65 0.30 -62.02 15 2 C -0.06 -3.39 5.50 84.86 0.47 -2.93 15 3 Si 0.95 46.22 27.73 68.60 1.90 48.12 15 4 H -0.28 -13.70 7.11 99.48 0.71 -12.99 15 5 H -0.29 -14.25 7.11 99.48 0.71 -13.54 15 6 H -0.26 -11.65 6.52 99.48 0.65 -11.00 15 7 C -0.23 -12.92 10.47 84.04 0.88 -12.04 15 8 H 0.07 4.22 8.06 -2.91 -0.02 4.19 15 9 N -0.75 -35.15 5.40 -347.17 -1.87 -37.02 15 10 C 0.23 8.62 6.78 85.63 0.58 9.20 15 11 C -0.05 -1.47 6.47 41.56 0.27 -1.20 15 12 C 0.07 1.98 11.36 83.22 0.95 2.92 15 13 N -0.32 -8.11 3.82 -184.35 -0.70 -8.81 15 14 C 0.31 6.40 8.14 137.92 1.12 7.53 15 15 N -0.32 -7.43 12.30 -48.58 -0.60 -8.03 15 16 O -0.19 -3.68 12.52 -38.30 -0.48 -4.15 15 17 C 0.01 0.13 8.25 72.64 0.60 0.73 15 18 C -0.13 -1.53 7.04 30.82 0.22 -1.31 15 19 N -0.05 -1.43 13.72 37.02 0.51 -0.93 15 20 N -0.22 -7.42 12.33 -49.03 -0.60 -8.03 15 21 H 0.26 15.70 8.31 -92.70 -0.77 14.93 15 22 H 0.36 16.76 5.52 -92.71 -0.51 16.25 15 23 H 0.07 2.38 8.14 -2.38 -0.02 2.36 15 24 H 0.05 1.83 8.14 -2.38 -0.02 1.81 15 25 H 0.23 4.80 8.06 -2.91 -0.02 4.77 15 26 H 0.10 0.72 8.14 -2.39 -0.02 0.70 15 27 H 0.15 0.38 8.14 -2.38 -0.02 0.36 15 28 H 0.13 1.07 8.14 -2.39 -0.02 1.05 15 29 H 0.13 1.20 8.14 -2.39 -0.02 1.18 15 Total: -1.00 -72.05 265.33 4.15 -67.90 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: 0.62 Total: 10.08 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: 5.08 Total: 2.89 kcal Atomic # 7 Polarization: -121.86 SS G_CDS: -2.97 Total: -124.83 kcal Atomic # 8 Polarization: -3.68 SS G_CDS: -0.48 Total: -4.15 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 1.90 Total: 48.12 kcal Total: -72.05 4.15 -67.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339306271.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.477 kcal (2) G-P(sol) polarization free energy of solvation -72.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds