Wall clock time and date at job start Thu Apr 9 2020 12:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86806 * 119.99814 * 2 1 4 4 H 1.48499 * 109.46971 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46950 * 299.99475 * 3 2 1 6 6 H 1.48501 * 109.47149 * 59.99722 * 3 2 1 7 7 C 1.40047 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99980 * 180.02562 * 7 2 1 9 9 C 1.46371 * 120.00031 * 359.97438 * 7 2 1 10 10 O 1.21693 * 120.00069 * 0.02562 * 9 7 2 11 11 N 1.34774 * 120.00112 * 180.02562 * 9 7 2 12 12 C 1.46502 * 119.99982 * 180.02562 * 11 9 7 13 13 C 1.50697 * 109.47242 * 179.97438 * 12 11 9 14 14 N 1.31079 * 126.65825 * 269.95504 * 13 12 11 15 15 N 1.28835 * 107.98833 * 180.02562 * 14 13 12 16 16 N 1.28738 * 109.40224 * 359.73164 * 15 14 13 17 17 N 1.29021 * 108.80436 * 0.44006 * 16 15 14 18 18 C 1.46501 * 126.43554 * 179.83122 * 17 16 15 19 19 C 1.53000 * 117.50040 * 59.69349 * 18 17 16 20 20 C 1.53002 * 60.02940 * 252.49639 * 19 18 17 21 21 H 0.96998 * 119.99757 * 0.02562 * 1 2 3 22 22 H 0.96999 * 120.00265 * 359.97438 * 11 9 7 23 23 H 1.08997 * 109.47324 * 59.99304 * 12 11 9 24 24 H 1.09007 * 109.47013 * 299.99579 * 12 11 9 25 25 H 1.09008 * 115.56043 * 205.37912 * 18 17 16 26 26 H 1.09002 * 117.49833 * 359.97438 * 19 18 17 27 27 H 1.09002 * 117.49953 * 144.99785 * 19 18 17 28 28 H 1.09000 * 117.49996 * 107.50493 * 20 19 18 29 29 H 1.08999 * 117.49664 * 252.51862 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7007 1.3465 0.0006 5 1 1.8820 2.3964 -1.2125 6 1 1.8819 2.3965 1.2125 7 6 2.0070 -1.2128 0.0005 8 1 3.0871 -1.2128 0.0010 9 6 1.2752 -2.4804 0.0017 10 8 0.0583 -2.4805 0.0017 11 7 1.9491 -3.6476 0.0027 12 6 1.2166 -4.9164 0.0033 13 6 2.1959 -6.0618 0.0038 14 7 2.7038 -6.6576 -1.0475 15 7 3.4968 -7.5853 -0.6346 16 7 3.5123 -7.5931 0.6526 17 7 2.7184 -6.6720 1.0837 18 6 2.4423 -6.3471 2.4853 19 6 3.6246 -5.9205 3.3577 20 6 2.9890 -7.2985 3.5526 21 1 -0.4850 0.8401 -0.0004 22 1 2.9191 -3.6476 0.0023 23 1 0.5902 -4.9747 -0.8868 24 1 0.5896 -4.9735 0.8932 25 1 1.4787 -5.8753 2.6778 26 1 4.6079 -5.8819 2.8889 27 1 3.4389 -5.1677 4.1239 28 1 3.5540 -8.1661 3.2120 29 1 2.3849 -7.4522 4.4468 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342900222.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:04:36 Heat of formation + Delta-G solvation = 81.878611 kcal Electronic energy + Delta-G solvation = -16267.841034 eV Core-core repulsion = 13421.827001 eV Total energy + Delta-G solvation = -2846.014032 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.097 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -45.38195 -39.49761 -38.87008 -35.95715 -34.77844 -34.57359 -33.14469 -29.39204 -27.37254 -26.28844 -24.03935 -23.38930 -22.37430 -21.77588 -19.60765 -18.73411 -18.18661 -17.50524 -16.63754 -16.25461 -15.99174 -15.69451 -15.20679 -14.53885 -14.38322 -14.08749 -13.45148 -13.37880 -13.19578 -13.10469 -12.74735 -12.64869 -12.61148 -12.36160 -11.98347 -11.73682 -11.63680 -11.02438 -10.94321 -9.92361 -9.67597 -8.31056 -6.87004 -0.04780 0.78138 0.93630 1.41584 1.43742 1.60098 2.24850 2.44681 2.48928 2.65488 3.10319 3.10985 3.34870 3.58432 3.67306 3.72508 4.11039 4.27699 4.47571 4.50763 4.62710 4.70048 4.90037 5.05804 5.14928 5.32709 5.80486 5.95026 6.19516 6.86532 7.37131 7.38071 8.41588 8.63772 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.032278 B = 0.005965 C = 0.005611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.268034 B = 4693.314490 C = 4988.600625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.034 3.966 3 Si 0.994 3.006 4 H -0.251 1.251 5 H -0.271 1.271 6 H -0.266 1.266 7 C -0.568 4.568 8 H 0.085 0.915 9 C 0.548 3.452 10 O -0.621 6.621 11 N -0.748 5.748 12 C 0.223 3.777 13 C 0.187 3.813 14 N -0.316 5.316 15 N -0.104 5.104 16 N -0.094 5.094 17 N -0.256 5.256 18 C 0.013 3.987 19 C -0.153 4.153 20 C -0.132 4.132 21 H 0.276 0.724 22 H 0.392 0.608 23 H 0.080 0.920 24 H 0.093 0.907 25 H 0.176 0.824 26 H 0.095 0.905 27 H 0.142 0.858 28 H 0.108 0.892 29 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.362 -8.656 9.690 14.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.182 4.182 3 Si 0.814 3.186 4 H -0.174 1.174 5 H -0.196 1.196 6 H -0.191 1.191 7 C -0.604 4.604 8 H 0.103 0.897 9 C 0.353 3.647 10 O -0.507 6.507 11 N -0.405 5.405 12 C 0.095 3.905 13 C -0.091 4.091 14 N -0.166 5.166 15 N -0.097 5.097 16 N -0.080 5.080 17 N -0.058 5.058 18 C -0.089 4.089 19 C -0.191 4.191 20 C -0.170 4.170 21 H 0.086 0.914 22 H 0.225 0.775 23 H 0.098 0.902 24 H 0.111 0.889 25 H 0.193 0.807 26 H 0.114 0.886 27 H 0.160 0.840 28 H 0.126 0.874 29 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 6.119 -9.578 9.021 14.510 hybrid contribution 0.042 1.102 0.101 1.107 sum 6.161 -8.476 9.122 13.893 Atomic orbital electron populations 1.70152 1.09292 1.29056 1.35957 1.26860 0.95494 1.04614 0.91226 0.85012 0.79272 0.75730 0.78571 1.17364 1.19628 1.19083 1.21368 0.94659 0.89776 1.54606 0.89700 1.18477 0.86785 0.83425 0.76049 1.90587 1.15699 1.87407 1.57030 1.45816 1.09121 1.03447 1.82087 1.19235 0.89340 0.77748 1.04127 1.25988 1.00817 0.99782 0.82481 1.75021 1.09866 1.06311 1.25431 1.78581 1.15190 1.14736 1.01228 1.78675 1.11762 1.09770 1.07814 1.48127 1.26857 1.20722 1.10081 1.23049 1.03238 1.10936 0.71678 1.23623 0.95238 0.99960 1.00282 1.23601 1.01787 0.94067 0.97526 0.91380 0.77481 0.90168 0.88899 0.80735 0.88624 0.84040 0.87411 0.83235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -47.33 11.83 21.84 0.26 -47.07 15 2 C 0.03 1.80 5.50 85.30 0.47 2.27 15 3 Si 0.99 39.08 29.56 68.60 2.03 41.11 15 4 H -0.25 -9.21 7.11 99.48 0.71 -8.50 15 5 H -0.27 -10.42 7.11 99.48 0.71 -9.71 15 6 H -0.27 -9.97 7.11 99.48 0.71 -9.27 15 7 C -0.57 -30.43 9.54 24.83 0.24 -30.20 15 8 H 0.08 4.13 7.85 -2.91 -0.02 4.11 15 9 C 0.55 29.52 7.75 86.36 0.67 30.19 15 10 O -0.62 -38.50 15.02 -4.33 -0.06 -38.57 15 11 N -0.75 -31.33 5.54 -471.14 -2.61 -33.94 15 12 C 0.22 7.98 6.01 85.63 0.51 8.49 15 13 C 0.19 6.15 7.50 138.13 1.04 7.19 15 14 N -0.32 -11.73 12.36 -50.45 -0.62 -12.35 15 15 N -0.10 -3.74 13.43 37.01 0.50 -3.24 15 16 N -0.09 -2.91 12.70 37.02 0.47 -2.44 15 17 N -0.26 -7.09 3.67 -317.70 -1.17 -8.26 15 18 C 0.01 0.24 6.64 45.01 0.30 0.54 15 19 C -0.15 -2.27 10.45 30.60 0.32 -1.95 15 20 C -0.13 -1.66 10.16 30.62 0.31 -1.35 15 21 H 0.28 14.48 8.29 -92.71 -0.77 13.71 15 22 H 0.39 15.07 8.44 -92.71 -0.78 14.28 15 23 H 0.08 3.11 8.14 -2.39 -0.02 3.09 15 24 H 0.09 3.03 7.35 -2.38 -0.02 3.02 15 25 H 0.18 2.87 7.42 -2.38 -0.02 2.85 15 26 H 0.10 1.68 8.14 -2.39 -0.02 1.66 15 27 H 0.14 1.55 8.14 -2.39 -0.02 1.53 15 28 H 0.11 1.58 7.85 -2.39 -0.02 1.56 15 29 H 0.15 0.96 8.14 -2.39 -0.02 0.95 15 Total: -1.00 -73.37 268.75 3.06 -70.31 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 0.41 Total: 19.28 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: 3.86 Total: 15.18 kcal Atomic # 7 Polarization: -104.13 SS G_CDS: -3.18 Total: -107.31 kcal Atomic # 8 Polarization: -38.50 SS G_CDS: -0.06 Total: -38.57 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 2.03 Total: 41.11 kcal Total: -73.37 3.06 -70.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342900222.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.190 kcal (2) G-P(sol) polarization free energy of solvation -73.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds