Wall clock time and date at job start Thu Apr 9 2020 12:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46501 * 120.00122 * 2 1 4 4 C 1.50706 * 109.46576 * 269.99619 * 3 2 1 5 5 H 1.07999 * 120.00203 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99807 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00023 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 119.99931 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47030 * 60.00587 * 8 6 4 10 10 H 1.48501 * 109.47113 * 180.02562 * 8 6 4 11 11 H 1.48490 * 109.47386 * 300.00294 * 8 6 4 12 12 C 1.34783 * 120.00251 * 179.97438 * 2 1 3 13 13 O 1.21504 * 120.00434 * 184.78646 * 12 2 1 14 14 C 1.48156 * 119.99378 * 4.79178 * 12 2 1 15 15 C 1.39893 * 121.12046 * 142.66549 * 14 12 2 16 16 N 1.31767 * 119.78676 * 180.27780 * 15 14 12 17 17 N 1.28276 * 122.41770 * 359.74270 * 16 15 14 18 18 C 1.32277 * 122.43613 * 0.02562 * 17 16 15 19 19 O 1.35707 * 120.08221 * 180.02562 * 18 17 16 20 20 C 1.39230 * 119.84044 * 359.97438 * 18 17 16 21 21 H 1.08998 * 109.46970 * 264.71228 * 1 2 3 22 22 H 1.09001 * 109.46750 * 24.71100 * 1 2 3 23 23 H 1.08996 * 109.47091 * 144.71555 * 1 2 3 24 24 H 1.08990 * 109.47272 * 29.99661 * 3 2 1 25 25 H 1.08997 * 109.47131 * 150.00342 * 3 2 1 26 26 H 0.96992 * 120.00183 * 179.97438 * 7 6 4 27 27 H 1.07996 * 120.10688 * 0.04555 * 15 14 12 28 28 H 0.96696 * 114.00447 * 269.98050 * 19 18 17 29 29 H 1.07998 * 121.12473 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7036 -1.4209 5 1 2.0975 1.0960 -2.2418 6 6 3.1261 2.8778 -1.6730 7 7 3.5534 3.6180 -0.6734 8 14 3.4381 3.4165 -3.4341 9 1 2.1408 3.5933 -4.1349 10 1 4.1805 4.7026 -3.4342 11 1 4.2414 2.3818 -4.1334 12 6 2.1389 -1.1672 0.0005 13 8 3.3508 -1.1691 0.0883 14 6 1.4020 -2.4480 -0.1061 15 6 1.9180 -3.5201 -0.8419 16 7 1.2378 -4.6456 -0.9237 17 7 0.1047 -4.8079 -0.3447 18 6 -0.4657 -3.8576 0.3774 19 8 -1.6659 -4.0813 0.9698 20 6 0.1689 -2.6276 0.5290 21 1 -0.3633 -0.0947 1.0233 22 1 -0.3633 0.9336 -0.4296 23 1 -0.3633 -0.8388 -0.5936 24 1 1.6085 2.0283 0.5137 25 1 3.1499 1.1384 0.5138 26 1 4.0302 4.4439 -0.8507 27 1 2.8692 -3.4242 -1.3444 28 1 -2.4258 -3.8452 0.4205 29 1 -0.2782 -1.8371 1.1134 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464503278.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:04:49 Heat of formation + Delta-G solvation = -2.000661 kcal Electronic energy + Delta-G solvation = -16354.747606 eV Core-core repulsion = 13472.803544 eV Total energy + Delta-G solvation = -2881.944062 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.090 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.39296 -39.09883 -37.74133 -35.26546 -33.58925 -32.47975 -31.47418 -28.10616 -26.70636 -24.98638 -24.57441 -22.80453 -20.05684 -18.69526 -17.73811 -16.82933 -16.68981 -16.62169 -15.99510 -15.27606 -14.66657 -14.32928 -14.08543 -13.73200 -13.06659 -12.65535 -12.41347 -12.32649 -11.96596 -11.46363 -11.33149 -11.05906 -10.72438 -10.33172 -10.24614 -10.04909 -9.85553 -9.80589 -9.19756 -8.56031 -7.96422 -6.17659 -4.24043 0.33587 0.62738 2.81579 3.23893 3.25181 3.29553 3.32227 3.38159 3.60363 4.11276 4.31963 4.39970 4.47634 4.70762 5.01288 5.17091 5.31176 5.37366 5.54805 5.71394 5.89012 5.94695 6.78076 7.05962 7.19177 7.27975 7.76633 8.02534 8.05230 8.48776 8.56568 8.80843 9.41767 10.90463 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.039384 B = 0.006011 C = 0.005779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.785615 B = 4657.171534 C = 4844.264608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.586 5.586 3 C 0.244 3.756 4 C -0.535 4.535 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.892 5.892 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.547 3.453 13 O -0.519 6.519 14 C -0.093 4.093 15 C 0.079 3.921 16 N -0.218 5.218 17 N -0.255 5.255 18 C 0.251 3.749 19 O -0.473 6.473 20 C -0.116 4.116 21 H 0.052 0.948 22 H 0.083 0.917 23 H 0.057 0.943 24 H 0.038 0.962 25 H 0.049 0.951 26 H 0.266 0.734 27 H 0.187 0.813 28 H 0.405 0.595 29 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.397 -9.033 1.422 13.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.317 5.317 3 C 0.125 3.875 4 C -0.574 4.574 5 H 0.076 0.924 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.200 1.200 12 C 0.331 3.669 13 O -0.395 6.395 14 C -0.108 4.108 15 C -0.087 4.087 16 N -0.062 5.062 17 N -0.107 5.107 18 C 0.066 3.934 19 O -0.278 6.278 20 C -0.146 4.146 21 H 0.070 0.930 22 H 0.102 0.898 23 H 0.076 0.924 24 H 0.056 0.944 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.204 0.796 28 H 0.263 0.737 29 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -9.486 -10.513 1.451 14.234 hybrid contribution -0.199 2.046 -0.714 2.176 sum -9.685 -8.467 0.737 12.885 Atomic orbital electron populations 1.22041 0.81396 1.03524 1.00109 1.48142 1.06367 1.07562 1.69608 1.19458 0.92806 0.77221 0.97982 1.21349 1.37412 1.06703 0.91940 0.92362 1.24933 0.95080 0.96225 0.97660 1.69910 1.37829 1.14335 1.30941 0.86517 0.78449 0.77953 0.84298 1.20182 1.21054 1.20043 1.17831 0.87141 0.82719 0.79173 1.90805 1.12838 1.86430 1.49447 1.21627 0.94431 0.97606 0.97116 1.24588 1.00689 0.88499 0.94890 1.73075 0.99926 1.19972 1.13195 1.72717 1.05365 1.27560 1.05103 1.20743 0.89845 0.89713 0.93141 1.84808 1.12812 1.88141 1.42049 1.23228 0.94877 0.98040 0.98489 0.92970 0.89801 0.92403 0.94361 0.93256 0.92429 0.79618 0.73681 0.81460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.01 8.88 59.85 0.53 1.54 15 2 N -0.59 -11.43 2.86 -183.97 -0.53 -11.96 15 3 C 0.24 5.97 5.17 -5.19 -0.03 5.94 15 4 C -0.54 -14.37 9.39 -34.43 -0.32 -14.70 15 5 H 0.06 1.55 7.81 -52.49 -0.41 1.14 15 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 15 7 N -0.89 -25.44 13.29 55.43 0.74 -24.70 15 8 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 15 9 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 15 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 12 C 0.55 10.73 7.43 -12.18 -0.09 10.63 15 13 O -0.52 -12.28 16.49 5.36 0.09 -12.19 15 14 C -0.09 -1.43 5.31 -104.60 -0.55 -1.99 15 15 C 0.08 1.17 10.96 -16.96 -0.19 0.98 15 16 N -0.22 -3.34 11.48 30.79 0.35 -2.98 15 17 N -0.25 -3.76 11.50 30.49 0.35 -3.41 15 18 C 0.25 3.11 7.85 -16.99 -0.13 2.98 15 19 O -0.47 -4.52 13.57 -18.83 -0.26 -4.78 15 20 C -0.12 -1.44 7.71 -38.61 -0.30 -1.73 15 21 H 0.05 0.57 6.89 -51.93 -0.36 0.21 15 22 H 0.08 1.19 8.03 -51.93 -0.42 0.77 15 23 H 0.06 0.68 5.83 -51.93 -0.30 0.37 15 24 H 0.04 0.94 8.07 -51.93 -0.42 0.52 15 25 H 0.05 1.37 7.36 -51.93 -0.38 0.98 15 26 H 0.27 7.19 8.31 -40.82 -0.34 6.85 15 27 H 0.19 2.55 8.06 -52.49 -0.42 2.13 15 28 H 0.41 1.64 9.06 45.56 0.41 2.05 15 29 H 0.17 1.70 5.31 -52.49 -0.28 1.42 15 LS Contribution 262.93 15.07 3.96 3.96 Total: -1.00 -33.18 262.93 -3.20 -36.38 By element: Atomic # 1 Polarization: 0.12 SS G_CDS: -1.71 Total: -1.60 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -1.18 Total: 5.31 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: 0.91 Total: -43.05 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.17 Total: -16.97 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -33.18 -3.20 -36.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464503278.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.382 kcal (2) G-P(sol) polarization free energy of solvation -33.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds