Wall clock time and date at job start Thu Apr 9 2020 12:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46840 * 179.97438 * 10 9 7 12 12 C 1.34779 * 119.99872 * 180.02562 * 11 10 9 13 13 O 1.21517 * 120.00102 * 0.02562 * 12 11 10 14 14 C 1.48154 * 119.99763 * 180.02562 * 12 11 10 15 15 C 1.39887 * 121.12474 * 359.72046 * 14 12 11 16 16 N 1.31772 * 119.78594 * 179.71359 * 15 14 12 17 17 N 1.28272 * 122.41996 * 0.58181 * 16 15 14 18 18 C 1.32277 * 122.43344 * 359.70180 * 17 16 15 19 19 O 1.35704 * 120.08121 * 180.02562 * 18 17 16 20 20 C 1.39236 * 119.84198 * 359.97438 * 18 17 16 21 21 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 23 23 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 24 24 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 25 25 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 26 26 H 0.97000 * 120.00420 * 0.02562 * 11 10 9 27 27 H 1.08003 * 120.10634 * 359.97438 * 15 14 12 28 28 H 0.96698 * 113.99904 * 269.98281 * 19 18 17 29 29 H 1.07997 * 121.11814 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5129 -4.9308 0.0012 12 6 2.1868 -6.0980 0.0018 13 8 3.4020 -6.0980 0.0023 14 6 1.4460 -7.3810 0.0018 15 6 0.0474 -7.4085 0.0071 16 7 -0.5846 -8.5647 0.0013 17 7 0.0356 -9.6875 0.0018 18 6 1.3559 -9.7686 0.0025 19 8 1.9627 -10.9824 0.0025 20 6 2.1215 -8.6057 0.0020 21 1 -0.4850 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6241 -2.5568 0.8902 24 1 2.8720 -3.6043 -0.8894 25 1 2.8720 -3.6043 0.8905 26 1 0.5429 -4.9308 0.0011 27 1 -0.5126 -6.4849 0.0116 28 1 2.1384 -11.3342 0.8859 29 1 3.2007 -8.6479 0.0029 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001556175498.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:04:59 Heat of formation + Delta-G solvation = -24.397663 kcal Electronic energy + Delta-G solvation = -15582.783244 eV Core-core repulsion = 12699.867975 eV Total energy + Delta-G solvation = -2882.915269 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.090 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.55918 -39.39194 -37.91054 -35.21368 -33.64029 -32.92392 -31.70689 -29.80747 -26.15132 -24.76685 -24.33605 -21.39431 -20.96699 -19.25113 -18.33132 -17.49869 -16.61245 -16.42301 -15.91546 -15.30358 -15.19626 -14.56277 -14.32000 -13.77258 -13.55590 -13.25264 -12.58587 -12.37629 -11.67494 -11.33635 -11.11685 -10.75335 -10.56994 -10.49839 -10.44115 -10.10346 -9.84246 -9.60566 -9.36247 -8.80256 -8.48646 -6.16975 -4.20705 0.02714 0.41775 2.57682 2.92554 3.16589 3.26360 3.30962 3.34240 3.37814 3.89854 4.11517 4.33629 4.44618 4.53693 4.69306 5.20248 5.27720 5.48203 5.59357 6.12374 6.16093 6.49990 6.60498 6.91417 7.37137 7.48053 7.62472 7.79726 8.11403 8.23775 8.27603 8.84501 9.44737 10.94396 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.062801 B = 0.004124 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.745280 B = 6788.029250 C = 7210.765935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.525 4.525 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.120 3.880 11 N -0.706 5.706 12 C 0.550 3.450 13 O -0.531 6.531 14 C -0.107 4.107 15 C 0.060 3.940 16 N -0.214 5.214 17 N -0.248 5.248 18 C 0.255 3.745 19 O -0.471 6.471 20 C -0.079 4.079 21 H 0.264 0.736 22 H 0.024 0.976 23 H 0.024 0.976 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.399 0.601 27 H 0.184 0.816 28 H 0.407 0.593 29 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.255 -15.910 1.762 16.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.564 4.564 8 H 0.078 0.922 9 C -0.026 4.026 10 C -0.002 4.002 11 N -0.356 5.356 12 C 0.334 3.666 13 O -0.409 6.409 14 C -0.121 4.121 15 C -0.105 4.105 16 N -0.057 5.057 17 N -0.100 5.100 18 C 0.069 3.931 19 O -0.277 6.277 20 C -0.110 4.110 21 H 0.073 0.927 22 H 0.043 0.957 23 H 0.043 0.957 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.234 0.766 27 H 0.201 0.799 28 H 0.266 0.734 29 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 0.591 -16.550 1.158 16.601 hybrid contribution 1.355 1.595 0.461 2.144 sum 1.946 -14.955 1.619 15.168 Atomic orbital electron populations 1.69931 1.06089 1.27158 1.49916 1.24994 0.94917 0.99469 0.94839 0.86551 0.79515 0.82555 0.78799 1.20086 1.21186 1.20086 1.20968 0.93216 0.90250 1.51959 0.92225 1.19346 0.94165 0.90969 0.98087 1.21900 0.96233 0.80678 1.01379 1.46307 1.10793 1.06390 1.72074 1.17892 0.87240 0.83202 0.78309 1.90789 1.12940 1.87219 1.49947 1.21471 0.94780 0.95667 1.00159 1.24703 0.91960 0.99730 0.94126 1.73077 1.30119 0.93885 1.08617 1.72786 1.08224 1.19794 1.09231 1.20776 0.89415 0.86247 0.96694 1.84815 1.77637 1.30830 1.34381 1.22787 1.03701 0.90564 0.93984 0.92667 0.95736 0.95729 0.91911 0.91919 0.76552 0.79919 0.73423 0.81413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.23 13.29 55.43 0.74 -24.50 15 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 15 3 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 15 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 15 5 H -0.29 -6.56 7.11 56.52 0.40 -6.15 15 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 7 C -0.53 -13.92 9.11 -34.44 -0.31 -14.24 15 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 15 9 C 0.01 0.27 5.09 -27.88 -0.14 0.13 15 10 C 0.12 2.32 5.61 -4.04 -0.02 2.29 15 11 N -0.71 -10.91 5.52 -61.15 -0.34 -11.25 15 12 C 0.55 8.40 7.80 -12.19 -0.10 8.31 15 13 O -0.53 -9.85 16.49 5.35 0.09 -9.76 15 14 C -0.11 -1.31 5.92 -104.60 -0.62 -1.93 15 15 C 0.06 0.68 10.84 -16.96 -0.18 0.49 15 16 N -0.21 -2.76 11.48 30.79 0.35 -2.40 15 17 N -0.25 -3.22 11.50 30.49 0.35 -2.87 15 18 C 0.25 2.80 7.85 -16.99 -0.13 2.67 15 19 O -0.47 -4.07 13.57 -18.82 -0.26 -4.33 15 20 C -0.08 -0.88 9.72 -38.60 -0.38 -1.26 15 21 H 0.26 7.08 8.31 -40.82 -0.34 6.75 15 22 H 0.02 0.59 8.14 -51.93 -0.42 0.17 15 23 H 0.02 0.59 8.14 -51.93 -0.42 0.17 15 24 H 0.06 1.26 8.14 -51.93 -0.42 0.84 15 25 H 0.06 1.25 8.14 -51.93 -0.42 0.83 15 26 H 0.40 5.11 6.62 -40.82 -0.27 4.84 15 27 H 0.18 1.56 6.53 -52.48 -0.34 1.22 15 28 H 0.41 1.29 9.06 45.56 0.41 1.70 15 29 H 0.17 1.69 7.79 -52.49 -0.41 1.28 15 LS Contribution 268.73 15.07 4.05 4.05 Total: -1.00 -32.44 268.73 -3.86 -36.30 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -1.84 Total: 1.02 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -1.98 Total: -2.00 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: 1.10 Total: -41.02 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -0.17 Total: -14.08 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -32.44 -3.86 -36.30 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556175498.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.904 kcal (2) G-P(sol) polarization free energy of solvation -32.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds