Wall clock time and date at job start Thu Apr 9 2020 12:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46911 * 2 1 4 4 C 1.50696 * 109.47054 * 239.99771 * 2 1 3 5 5 H 1.08001 * 119.99783 * 240.00088 * 4 2 1 6 6 C 1.37879 * 120.00184 * 59.99990 * 4 2 1 7 7 N 1.31510 * 119.99797 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99955 * 180.02562 * 6 4 2 9 9 H 1.48489 * 109.47541 * 59.99549 * 8 6 4 10 10 H 1.48497 * 109.46878 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46735 * 299.99302 * 8 6 4 12 12 N 1.46500 * 109.47072 * 119.99522 * 2 1 3 13 13 C 1.37836 * 119.99997 * 275.27145 * 12 2 1 14 14 N 1.32982 * 120.64452 * 354.34234 * 13 12 2 15 15 C 1.31675 * 120.84726 * 179.76056 * 14 13 12 16 16 N 1.31971 * 122.24376 * 0.52567 * 15 14 13 17 17 C 1.32192 * 121.20379 * 359.73898 * 16 15 14 18 18 C 1.39827 * 118.98996 * 0.02562 * 17 16 15 19 19 C 1.47300 * 120.99850 * 180.02562 * 18 17 16 20 20 O 1.21526 * 119.99685 * 185.57885 * 19 18 17 21 21 O 1.34755 * 120.00032 * 5.57044 * 19 18 17 22 22 H 1.08998 * 109.47385 * 60.00048 * 1 2 3 23 23 H 1.08997 * 109.47520 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47271 * 300.00377 * 1 2 3 25 25 H 0.97005 * 119.99891 * 180.02562 * 7 6 4 26 26 H 0.97000 * 119.99858 * 94.99998 * 12 2 1 27 27 H 1.08006 * 118.87389 * 180.24725 * 15 14 13 28 28 H 1.08001 * 120.50482 * 179.97438 * 17 16 15 29 29 H 0.96701 * 117.00120 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9427 0.8295 -2.6034 8 14 2.3213 -1.1206 -4.0079 9 1 1.8259 -2.5204 -4.0076 10 1 1.8269 -0.4202 -5.2204 11 1 3.8063 -1.1210 -4.0081 12 7 2.0183 -0.6905 1.1962 13 6 2.1446 -0.0042 2.3849 14 7 1.9347 1.3080 2.4355 15 6 2.0497 1.9668 3.5698 16 7 2.3845 1.3716 4.6990 17 6 2.6176 0.0711 4.7448 18 6 2.5053 -0.6792 3.5702 19 6 2.7545 -2.1310 3.5707 20 8 2.7516 -2.7483 2.5239 21 8 2.9859 -2.7745 4.7319 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 0.7081 1.1606 -3.4845 26 1 2.2490 -1.6317 1.1527 27 1 1.8680 3.0315 3.5752 28 1 2.8913 -0.4044 5.6750 29 1 3.1446 -3.7271 4.6818 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592225955.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:05:07 Heat of formation + Delta-G solvation = -41.235683 kcal Electronic energy + Delta-G solvation = -16549.583849 eV Core-core repulsion = 13665.938429 eV Total energy + Delta-G solvation = -2883.645420 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.090 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.86226 -39.43847 -36.67251 -35.71379 -33.36598 -32.54457 -31.12141 -28.43693 -25.43515 -25.18075 -23.35248 -21.86951 -20.51075 -18.31067 -17.89646 -17.00559 -16.64812 -16.19678 -15.63256 -14.87755 -14.46169 -14.31699 -13.67312 -13.60863 -13.04767 -12.54439 -12.22417 -11.55341 -11.42400 -11.36087 -11.08880 -10.87993 -10.59577 -10.29958 -10.26331 -10.00926 -9.72749 -9.09854 -8.81264 -8.53671 -7.51640 -6.17805 -4.26667 0.80525 1.81475 2.72202 3.11500 3.24941 3.29137 3.31778 3.84804 4.23964 4.32537 4.46845 4.66988 5.12244 5.15227 5.25046 5.70988 5.77993 6.43191 6.57285 6.72649 6.89406 7.00366 7.18691 7.34082 7.60474 7.74401 7.90621 8.03911 8.09602 8.37918 8.66184 8.87383 9.39746 10.88233 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.030031 B = 0.007382 C = 0.006251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.157000 B = 3792.242835 C = 4477.897295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.256 3.744 3 H 0.061 0.939 4 C -0.537 4.537 5 H 0.062 0.938 6 C 0.069 3.931 7 N -0.883 5.883 8 Si 0.904 3.096 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.645 5.645 13 C 0.484 3.516 14 N -0.569 5.569 15 C 0.365 3.635 16 N -0.594 5.594 17 C 0.244 3.756 18 C -0.340 4.340 19 C 0.546 3.454 20 O -0.525 6.525 21 O -0.515 6.515 22 H 0.095 0.905 23 H 0.026 0.974 24 H 0.014 0.986 25 H 0.266 0.734 26 H 0.419 0.581 27 H 0.195 0.805 28 H 0.170 0.830 29 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.218 -2.623 12.326 12.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.155 3.845 3 H 0.079 0.921 4 C -0.576 4.576 5 H 0.080 0.920 6 C -0.134 4.134 7 N -0.520 5.520 8 Si 0.731 3.269 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.201 1.201 12 N -0.273 5.273 13 C 0.233 3.767 14 N -0.293 5.293 15 C 0.075 3.925 16 N -0.315 5.315 17 C 0.077 3.923 18 C -0.355 4.355 19 C 0.392 3.608 20 O -0.415 6.415 21 O -0.326 6.326 22 H 0.113 0.887 23 H 0.046 0.954 24 H 0.033 0.967 25 H 0.076 0.924 26 H 0.266 0.734 27 H 0.211 0.789 28 H 0.187 0.813 29 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 1.814 -1.302 11.545 11.759 hybrid contribution 0.600 -2.298 -0.930 2.551 sum 2.413 -3.600 10.615 11.466 Atomic orbital electron populations 1.22096 0.97897 0.99324 1.01067 1.19072 0.91340 0.94517 0.79599 0.92122 1.21156 1.32800 1.13442 0.90168 0.92020 1.24846 0.94676 0.94926 0.98987 1.69876 1.35675 1.22376 1.24123 0.86461 0.79243 0.79655 0.81520 1.20079 1.21027 1.20103 1.46559 1.59309 1.14529 1.06899 1.18660 0.83868 0.88146 0.86068 1.68337 1.24856 1.06203 1.29928 1.24922 0.84876 1.00472 0.82223 1.68464 1.22199 1.10785 1.30088 1.23196 0.83989 0.89076 0.96000 1.19887 1.26701 0.91647 0.97246 1.20351 0.72074 0.87590 0.80745 1.90677 1.49969 1.68208 1.32621 1.84532 1.83717 1.28739 1.35618 0.88659 0.95437 0.96674 0.92426 0.73422 0.78855 0.81327 0.73035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 9.27 37.16 0.34 -3.23 15 2 C 0.26 6.52 2.63 -69.09 -0.18 6.34 15 3 H 0.06 1.69 7.49 -51.93 -0.39 1.30 15 4 C -0.54 -14.64 8.73 -34.44 -0.30 -14.94 15 5 H 0.06 1.67 7.74 -52.49 -0.41 1.26 15 6 C 0.07 1.87 5.30 -17.82 -0.09 1.77 15 7 N -0.88 -24.50 11.32 55.43 0.63 -23.88 15 8 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 15 9 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 12 N -0.64 -14.56 5.08 -54.69 -0.28 -14.84 15 13 C 0.48 9.77 7.49 -154.90 -1.16 8.61 15 14 N -0.57 -11.12 9.29 -13.58 -0.13 -11.24 15 15 C 0.36 5.73 12.26 -92.10 -1.13 4.61 15 16 N -0.59 -8.96 10.41 -14.29 -0.15 -9.11 15 17 C 0.24 3.50 10.89 -16.80 -0.18 3.31 15 18 C -0.34 -5.74 5.92 -104.54 -0.62 -6.36 15 19 C 0.55 8.52 8.26 34.42 0.28 8.81 15 20 O -0.52 -9.73 14.61 -19.29 -0.28 -10.01 15 21 O -0.51 -5.59 12.79 -40.64 -0.52 -6.11 15 22 H 0.09 2.52 6.07 -51.93 -0.32 2.20 15 23 H 0.03 0.65 8.14 -51.93 -0.42 0.23 15 24 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 15 25 H 0.27 7.01 8.31 -40.82 -0.34 6.67 15 26 H 0.42 9.47 5.23 -40.82 -0.21 9.26 15 27 H 0.19 2.29 8.06 -52.48 -0.42 1.87 15 28 H 0.17 1.83 7.72 -52.49 -0.41 1.43 15 29 H 0.41 2.57 9.11 45.56 0.42 2.99 15 LS Contribution 261.12 15.07 3.94 3.94 Total: -1.00 -30.68 261.12 -6.57 -37.25 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -1.72 Total: 9.14 kcal Atomic # 6 Polarization: 11.97 SS G_CDS: -3.04 Total: 8.93 kcal Atomic # 7 Polarization: -59.14 SS G_CDS: 0.07 Total: -59.06 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -0.80 Total: -16.12 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.68 -6.57 -37.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592225955.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.982 kcal (2) G-P(sol) polarization free energy of solvation -30.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds