Wall clock time and date at job start Thu Apr 9 2020 12:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46911 * 2 1 4 4 C 1.50696 * 109.47054 * 239.99771 * 2 1 3 5 5 H 1.08001 * 119.99783 * 240.00088 * 4 2 1 6 6 C 1.37879 * 120.00184 * 59.99990 * 4 2 1 7 7 N 1.31510 * 119.99797 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99955 * 180.02562 * 6 4 2 9 9 H 1.48489 * 109.47541 * 59.99549 * 8 6 4 10 10 H 1.48497 * 109.46878 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46735 * 299.99302 * 8 6 4 12 12 N 1.46500 * 109.47072 * 119.99522 * 2 1 3 13 13 C 1.37836 * 119.99997 * 275.27145 * 12 2 1 14 14 N 1.32982 * 120.64452 * 354.34234 * 13 12 2 15 15 C 1.31675 * 120.84726 * 179.76056 * 14 13 12 16 16 N 1.31971 * 122.24376 * 0.52567 * 15 14 13 17 17 C 1.32192 * 121.20379 * 359.73898 * 16 15 14 18 18 C 1.39827 * 118.98996 * 0.02562 * 17 16 15 19 19 C 1.47300 * 120.99850 * 180.02562 * 18 17 16 20 20 O 1.21526 * 119.99685 * 185.57885 * 19 18 17 21 21 O 1.34755 * 120.00032 * 5.57044 * 19 18 17 22 22 H 1.08998 * 109.47385 * 60.00048 * 1 2 3 23 23 H 1.08997 * 109.47520 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47271 * 300.00377 * 1 2 3 25 25 H 0.97005 * 119.99891 * 180.02562 * 7 6 4 26 26 H 0.97000 * 119.99858 * 94.99998 * 12 2 1 27 27 H 1.08006 * 118.87389 * 180.24725 * 15 14 13 28 28 H 1.08001 * 120.50482 * 179.97438 * 17 16 15 29 29 H 0.96701 * 117.00120 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9427 0.8295 -2.6034 8 14 2.3213 -1.1206 -4.0079 9 1 1.8259 -2.5204 -4.0076 10 1 1.8269 -0.4202 -5.2204 11 1 3.8063 -1.1210 -4.0081 12 7 2.0183 -0.6905 1.1962 13 6 2.1446 -0.0042 2.3849 14 7 1.9347 1.3080 2.4355 15 6 2.0497 1.9668 3.5698 16 7 2.3845 1.3716 4.6990 17 6 2.6176 0.0711 4.7448 18 6 2.5053 -0.6792 3.5702 19 6 2.7545 -2.1310 3.5707 20 8 2.7516 -2.7483 2.5239 21 8 2.9859 -2.7745 4.7319 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 0.7081 1.1606 -3.4845 26 1 2.2490 -1.6317 1.1527 27 1 1.8680 3.0315 3.5752 28 1 2.8913 -0.4044 5.6750 29 1 3.1446 -3.7271 4.6818 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592225955.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:05:07 Heat of formation + Delta-G solvation = -62.310804 kcal Electronic energy + Delta-G solvation = -16550.497735 eV Core-core repulsion = 13665.938429 eV Total energy + Delta-G solvation = -2884.559306 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.090 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.17325 -40.64652 -38.18959 -36.97761 -35.14397 -33.94127 -32.76354 -30.17645 -27.40564 -26.52396 -24.84261 -23.11264 -22.29709 -19.66545 -19.25800 -18.24207 -18.20529 -17.84392 -16.87659 -16.72682 -15.91660 -15.72156 -15.27137 -14.81407 -14.48115 -14.28972 -13.96032 -13.28121 -12.97539 -12.78539 -12.65113 -12.62801 -12.43309 -12.19550 -12.00018 -11.39429 -11.16117 -11.02182 -10.60781 -10.12956 -9.10526 -8.22565 -6.39193 -0.44724 0.44597 1.40782 1.42341 1.50041 1.50578 2.00749 2.27007 2.47382 2.92997 3.07581 3.32379 3.38986 3.74556 4.00053 4.58463 4.60211 4.68574 4.90269 5.01028 5.24269 5.44185 5.49302 5.60023 5.72412 5.85511 6.03050 6.31123 6.62735 6.80624 7.01142 7.28616 7.37066 8.82999 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.030031 B = 0.007382 C = 0.006251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.157000 B = 3792.242835 C = 4477.897295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.269 3.731 3 H 0.029 0.971 4 C -0.559 4.559 5 H 0.055 0.945 6 C 0.024 3.976 7 N -0.907 5.907 8 Si 0.968 3.032 9 H -0.270 1.270 10 H -0.277 1.277 11 H -0.273 1.273 12 N -0.666 5.666 13 C 0.465 3.535 14 N -0.605 5.605 15 C 0.366 3.634 16 N -0.586 5.586 17 C 0.258 3.742 18 C -0.347 4.347 19 C 0.555 3.445 20 O -0.558 6.558 21 O -0.492 6.492 22 H 0.074 0.926 23 H 0.025 0.975 24 H 0.022 0.978 25 H 0.268 0.732 26 H 0.417 0.583 27 H 0.229 0.771 28 H 0.212 0.788 29 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.825 -3.164 13.956 14.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.165 3.835 3 H 0.046 0.954 4 C -0.597 4.597 5 H 0.074 0.926 6 C -0.177 4.177 7 N -0.545 5.545 8 Si 0.792 3.208 9 H -0.195 1.195 10 H -0.202 1.202 11 H -0.198 1.198 12 N -0.297 5.297 13 C 0.216 3.784 14 N -0.331 5.331 15 C 0.078 3.922 16 N -0.306 5.306 17 C 0.091 3.909 18 C -0.360 4.360 19 C 0.401 3.599 20 O -0.451 6.451 21 O -0.305 6.305 22 H 0.093 0.907 23 H 0.044 0.956 24 H 0.041 0.959 25 H 0.078 0.922 26 H 0.263 0.737 27 H 0.245 0.755 28 H 0.228 0.772 29 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges 2.435 -1.836 13.270 13.616 hybrid contribution 0.448 -2.096 -1.207 2.460 sum 2.883 -3.932 12.063 13.011 Atomic orbital electron populations 1.21890 0.97837 0.98832 1.00282 1.18614 0.91303 0.92880 0.80661 0.95355 1.21437 1.33177 1.13579 0.91490 0.92633 1.25647 0.94715 0.95564 1.01739 1.69988 1.36289 1.23366 1.24858 0.85468 0.78652 0.78658 0.78000 1.19532 1.20208 1.19813 1.46219 1.62017 1.14367 1.07078 1.18984 0.84298 0.88806 0.86285 1.68334 1.26253 1.06490 1.32004 1.25630 0.83442 1.01761 0.81368 1.68605 1.21450 1.11173 1.29421 1.23841 0.81998 0.88565 0.96449 1.20068 1.26357 0.92855 0.96766 1.20137 0.71328 0.87207 0.81200 1.90670 1.51499 1.68756 1.34179 1.84460 1.82612 1.30699 1.32754 0.90732 0.95607 0.95928 0.92223 0.73714 0.75518 0.77168 0.70261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.58 9.27 71.98 0.67 -5.91 15 2 C 0.27 14.16 2.63 44.24 0.12 14.28 15 3 H 0.03 1.66 7.49 -2.39 -0.02 1.64 15 4 C -0.56 -31.26 8.73 25.60 0.22 -31.04 15 5 H 0.06 3.09 7.74 -2.91 -0.02 3.07 15 6 C 0.02 1.34 5.30 84.66 0.45 1.79 15 7 N -0.91 -51.32 11.32 21.45 0.24 -51.08 15 8 Si 0.97 43.23 29.54 68.60 2.03 45.26 15 9 H -0.27 -11.78 7.11 99.48 0.71 -11.07 15 10 H -0.28 -11.93 7.11 99.48 0.71 -11.22 15 11 H -0.27 -11.99 7.11 99.48 0.71 -11.28 15 12 N -0.67 -30.89 5.08 -326.94 -1.66 -32.55 15 13 C 0.47 18.83 7.49 133.77 1.00 19.84 15 14 N -0.61 -23.63 9.29 -196.89 -1.83 -25.46 15 15 C 0.37 10.88 12.26 180.87 2.22 13.10 15 16 N -0.59 -16.00 10.41 -199.11 -2.07 -18.07 15 17 C 0.26 6.55 10.89 85.02 0.93 7.48 15 18 C -0.35 -11.15 5.92 -19.81 -0.12 -11.27 15 19 C 0.55 16.30 8.26 70.21 0.58 16.88 15 20 O -0.56 -20.46 14.61 19.75 0.29 -20.17 15 21 O -0.49 -8.93 12.79 -56.66 -0.72 -9.66 15 22 H 0.07 4.07 6.07 -2.39 -0.01 4.06 15 23 H 0.02 1.25 8.14 -2.39 -0.02 1.23 15 24 H 0.02 1.05 8.14 -2.38 -0.02 1.03 15 25 H 0.27 14.32 8.31 -92.70 -0.77 13.55 15 26 H 0.42 19.39 5.23 -92.71 -0.48 18.91 15 27 H 0.23 4.87 8.06 -2.91 -0.02 4.84 15 28 H 0.21 3.51 7.72 -2.91 -0.02 3.49 15 29 H 0.44 3.85 9.11 -74.06 -0.67 3.17 15 Total: -1.00 -67.56 261.12 2.38 -65.17 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: 0.05 Total: 21.41 kcal Atomic # 6 Polarization: 19.08 SS G_CDS: 6.06 Total: 25.14 kcal Atomic # 7 Polarization: -121.84 SS G_CDS: -5.32 Total: -127.16 kcal Atomic # 8 Polarization: -29.39 SS G_CDS: -0.44 Total: -29.83 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -67.56 2.38 -65.17 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592225955.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.862 kcal (2) G-P(sol) polarization free energy of solvation -67.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds