Wall clock time and date at job start Thu Apr 9 2020 12:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86803 * 119.99936 * 2 1 4 4 H 1.48508 * 109.46742 * 269.99872 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99729 * 3 2 1 6 6 H 1.48499 * 109.47135 * 150.00070 * 3 2 1 7 7 C 1.40050 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99772 * 179.97438 * 7 2 1 9 9 C 1.46373 * 119.99716 * 0.28083 * 7 2 1 10 10 O 1.21683 * 120.00158 * 359.71943 * 9 7 2 11 11 N 1.34775 * 119.99634 * 179.71971 * 9 7 2 12 12 C 1.46507 * 119.99876 * 179.97438 * 11 9 7 13 13 C 1.50701 * 112.84695 * 50.33863 * 12 11 9 14 14 N 1.33313 * 126.55048 * 134.35597 * 13 12 11 15 15 N 1.28997 * 107.35436 * 179.83181 * 14 13 12 16 16 N 1.28784 * 108.72622 * 0.43303 * 15 14 13 17 17 H 0.96999 * 125.45056 * 179.72397 * 16 15 14 18 18 N 1.28885 * 109.09905 * 359.72216 * 16 15 14 19 19 C 1.53776 * 113.61716 * 279.13919 * 12 11 9 20 20 C 1.54048 * 86.98705 * 270.83779 * 19 12 11 21 21 C 1.53773 * 87.07733 * 334.57150 * 20 19 12 22 22 H 0.97005 * 120.00029 * 0.02562 * 1 2 3 23 23 H 0.97000 * 120.00523 * 0.02562 * 11 9 7 24 24 H 1.09003 * 113.61305 * 25.43152 * 19 12 11 25 25 H 1.08999 * 113.61928 * 156.33283 * 19 12 11 26 26 H 1.08996 * 113.61931 * 220.01892 * 20 19 12 27 27 H 1.09006 * 113.61302 * 89.11474 * 20 19 12 28 28 H 1.09009 * 113.61154 * 270.88256 * 21 20 19 29 29 H 1.08997 * 113.62300 * 139.98258 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4882 2.0464 -1.4002 5 1 1.4382 2.6527 0.7000 6 1 3.5383 1.4402 0.7000 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2751 -2.4805 -0.0051 10 8 0.0583 -2.4805 -0.0051 11 7 1.9491 -3.6476 -0.0103 12 6 1.2166 -4.9164 -0.0154 13 6 0.1560 -4.9755 -1.0844 14 7 -0.0766 -5.9905 -1.9167 15 7 -1.0655 -5.6500 -2.6719 16 7 -1.4458 -4.4637 -2.3453 17 1 -2.1699 -3.9705 -2.7615 18 7 -0.7102 -4.0367 -1.3769 19 6 0.7153 -5.3439 1.3741 20 6 2.0661 -6.0632 1.5505 21 6 2.1285 -6.1542 0.0167 22 1 -0.4850 0.8401 -0.0004 23 1 2.9191 -3.6476 -0.0099 24 1 0.5698 -4.5104 2.0613 25 1 -0.1386 -6.0205 1.3411 26 1 1.9838 -7.0323 2.0425 27 1 2.8433 -5.4327 1.9825 28 1 1.6602 -7.0521 -0.3868 29 1 3.1231 -5.9746 -0.3913 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593862942.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:05:09 Heat of formation + Delta-G solvation = 126.244884 kcal Electronic energy + Delta-G solvation = -17145.001225 eV Core-core repulsion = 14300.911058 eV Total energy + Delta-G solvation = -2844.090167 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.097 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.65811 -39.16174 -36.20850 -33.38211 -32.61290 -32.02775 -31.30694 -26.62662 -25.46319 -25.16764 -23.54128 -21.83451 -20.32214 -18.89627 -17.80635 -17.14416 -16.29953 -15.65371 -15.19155 -14.84396 -14.04313 -13.65644 -13.12414 -12.61191 -12.33352 -11.95734 -11.77554 -11.41320 -11.17461 -11.00077 -10.66784 -10.56078 -10.47656 -10.42755 -10.21636 -10.16053 -9.83190 -9.47879 -8.84013 -7.58896 -7.43139 -6.16053 -4.61520 1.94116 2.84670 3.08913 3.13360 3.20611 3.23456 4.09163 4.44807 4.58351 4.70452 4.74952 5.03229 5.24339 5.52415 5.62986 5.91142 5.99759 6.09824 6.17917 6.31151 6.42331 6.53610 6.57206 6.69491 7.17856 7.43930 7.87573 8.06060 8.31798 9.02878 9.04499 9.51488 10.62025 10.82739 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.028114 B = 0.009014 C = 0.007393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.707248 B = 3105.382983 C = 3786.638458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.090 3.910 3 Si 0.904 3.096 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.065 0.935 9 C 0.544 3.456 10 O -0.531 6.531 11 N -0.742 5.742 12 C 0.259 3.741 13 C 0.163 3.837 14 N -0.286 5.286 15 N -0.092 5.092 16 N -0.251 5.251 17 H 0.465 0.535 18 N -0.189 5.189 19 C -0.133 4.133 20 C -0.135 4.135 21 C -0.129 4.129 22 H 0.266 0.734 23 H 0.386 0.614 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.098 0.902 29 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.753 -7.830 -0.429 8.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.130 4.130 3 Si 0.729 3.271 4 H -0.200 1.200 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.582 4.582 8 H 0.083 0.917 9 C 0.346 3.654 10 O -0.408 6.408 11 N -0.398 5.398 12 C 0.166 3.834 13 C -0.122 4.122 14 N -0.161 5.161 15 N -0.087 5.087 16 N -0.097 5.097 17 H 0.318 0.682 18 N -0.041 5.041 19 C -0.173 4.173 20 C -0.173 4.173 21 C -0.168 4.168 22 H 0.077 0.923 23 H 0.219 0.781 24 H 0.098 0.902 25 H 0.095 0.905 26 H 0.086 0.914 27 H 0.102 0.898 28 H 0.116 0.884 29 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.366 -7.943 -0.880 8.000 hybrid contribution 0.661 1.478 -0.053 1.620 sum 1.028 -6.466 -0.934 6.613 Atomic orbital electron populations 1.70021 1.06852 1.26970 1.35699 1.25635 0.94592 1.00003 0.92752 0.86434 0.80242 0.81717 0.78706 1.19953 1.20548 1.18955 1.20832 0.93464 0.89305 1.54556 0.91697 1.18332 0.87835 0.82023 0.77167 1.90701 1.12894 1.85466 1.51699 1.46153 1.08320 1.03094 1.82273 1.18851 0.88397 0.87363 0.88806 1.25975 0.99439 0.86864 0.99884 1.75640 1.09408 1.25525 1.05516 1.78704 1.09583 0.99686 1.20696 1.48451 1.26506 1.11085 1.23640 0.68244 1.76302 1.03907 1.22146 1.01704 1.23332 0.96831 1.00224 0.96950 1.22826 0.98160 1.00440 0.95858 1.23213 0.99537 0.97362 0.96662 0.92332 0.78066 0.90165 0.90513 0.91353 0.89793 0.88355 0.90815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.22 11.83 55.55 0.66 -21.56 15 2 C 0.09 2.44 5.50 -17.36 -0.10 2.34 15 3 Si 0.90 19.89 29.56 -169.99 -5.02 14.86 15 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 15 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 15 6 H -0.27 -5.66 7.11 56.52 0.40 -5.26 15 7 C -0.54 -14.95 9.54 -35.63 -0.34 -15.29 15 8 H 0.06 1.65 7.85 -52.49 -0.41 1.24 15 9 C 0.54 14.72 7.44 -12.99 -0.10 14.62 15 10 O -0.53 -15.74 11.49 5.20 0.06 -15.68 15 11 N -0.74 -16.15 5.20 -49.32 -0.26 -16.41 15 12 C 0.26 5.03 1.11 -132.16 -0.15 4.88 15 13 C 0.16 3.47 7.03 -156.63 -1.10 2.37 15 14 N -0.29 -5.67 11.76 32.44 0.38 -5.28 15 15 N -0.09 -1.71 13.48 60.35 0.81 -0.89 15 16 N -0.25 -4.58 7.91 60.34 0.48 -4.10 15 17 H 0.47 6.40 8.96 -340.52 -3.05 3.34 15 18 N -0.19 -4.33 8.78 32.46 0.29 -4.04 15 19 C -0.13 -2.35 7.43 -25.78 -0.19 -2.54 15 20 C -0.14 -1.87 8.00 -25.78 -0.21 -2.07 15 21 C -0.13 -1.92 7.22 -25.92 -0.19 -2.11 15 22 H 0.27 7.07 8.29 -40.82 -0.34 6.73 15 23 H 0.39 7.38 8.61 -40.82 -0.35 7.02 15 24 H 0.08 1.60 8.14 -51.93 -0.42 1.17 15 25 H 0.08 1.29 8.09 -51.93 -0.42 0.87 15 26 H 0.07 0.79 8.14 -51.93 -0.42 0.37 15 27 H 0.08 1.12 8.14 -51.93 -0.42 0.70 15 28 H 0.10 1.42 7.62 -51.92 -0.40 1.03 15 29 H 0.07 1.00 8.11 -51.93 -0.42 0.57 15 LS Contribution 256.58 15.07 3.87 3.87 Total: -1.00 -33.89 256.58 -6.56 -40.45 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -5.45 Total: 6.58 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -2.36 Total: 2.20 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: 2.36 Total: -52.29 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: 0.06 Total: -15.68 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -33.89 -6.56 -40.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593862942.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.699 kcal (2) G-P(sol) polarization free energy of solvation -33.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds