Wall clock time and date at job start Thu Apr 9 2020 12:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86803 * 119.99936 * 2 1 4 4 H 1.48508 * 109.46742 * 269.99872 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99729 * 3 2 1 6 6 H 1.48499 * 109.47135 * 150.00070 * 3 2 1 7 7 C 1.40050 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99772 * 179.97438 * 7 2 1 9 9 C 1.46373 * 119.99716 * 0.28083 * 7 2 1 10 10 O 1.21683 * 120.00158 * 359.71943 * 9 7 2 11 11 N 1.34775 * 119.99634 * 179.71971 * 9 7 2 12 12 C 1.46507 * 119.99876 * 179.97438 * 11 9 7 13 13 C 1.50701 * 112.84695 * 50.33863 * 12 11 9 14 14 N 1.33313 * 126.55048 * 134.35597 * 13 12 11 15 15 N 1.28997 * 107.35436 * 179.83181 * 14 13 12 16 16 N 1.28784 * 108.72622 * 0.43303 * 15 14 13 17 17 H 0.96999 * 125.45056 * 179.72397 * 16 15 14 18 18 N 1.28885 * 109.09905 * 359.72216 * 16 15 14 19 19 C 1.53776 * 113.61716 * 279.13919 * 12 11 9 20 20 C 1.54048 * 86.98705 * 270.83779 * 19 12 11 21 21 C 1.53773 * 87.07733 * 334.57150 * 20 19 12 22 22 H 0.97005 * 120.00029 * 0.02562 * 1 2 3 23 23 H 0.97000 * 120.00523 * 0.02562 * 11 9 7 24 24 H 1.09003 * 113.61305 * 25.43152 * 19 12 11 25 25 H 1.08999 * 113.61928 * 156.33283 * 19 12 11 26 26 H 1.08996 * 113.61931 * 220.01892 * 20 19 12 27 27 H 1.09006 * 113.61302 * 89.11474 * 20 19 12 28 28 H 1.09009 * 113.61154 * 270.88256 * 21 20 19 29 29 H 1.08997 * 113.62300 * 139.98258 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4882 2.0464 -1.4002 5 1 1.4382 2.6527 0.7000 6 1 3.5383 1.4402 0.7000 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2751 -2.4805 -0.0051 10 8 0.0583 -2.4805 -0.0051 11 7 1.9491 -3.6476 -0.0103 12 6 1.2166 -4.9164 -0.0154 13 6 0.1560 -4.9755 -1.0844 14 7 -0.0766 -5.9905 -1.9167 15 7 -1.0655 -5.6500 -2.6719 16 7 -1.4458 -4.4637 -2.3453 17 1 -2.1699 -3.9705 -2.7615 18 7 -0.7102 -4.0367 -1.3769 19 6 0.7153 -5.3439 1.3741 20 6 2.0661 -6.0632 1.5505 21 6 2.1285 -6.1542 0.0167 22 1 -0.4850 0.8401 -0.0004 23 1 2.9191 -3.6476 -0.0099 24 1 0.5698 -4.5104 2.0613 25 1 -0.1386 -6.0205 1.3411 26 1 1.9838 -7.0323 2.0425 27 1 2.8433 -5.4327 1.9825 28 1 1.6602 -7.0521 -0.3868 29 1 3.1231 -5.9746 -0.3913 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001593862942.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:05:08 Heat of formation + Delta-G solvation = 99.774286 kcal Electronic energy + Delta-G solvation = -17146.149076 eV Core-core repulsion = 14300.911058 eV Total energy + Delta-G solvation = -2845.238018 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.097 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.22176 -40.66175 -38.07755 -34.93842 -34.58630 -33.65812 -33.13914 -28.53075 -26.92107 -26.64306 -25.08761 -23.37827 -22.03516 -20.45125 -19.35268 -19.05894 -17.86238 -17.33192 -17.01946 -16.29191 -15.73527 -15.17330 -14.71558 -14.35269 -14.24868 -13.36515 -13.24930 -13.12192 -12.91664 -12.68017 -12.47468 -12.09462 -12.01213 -11.97174 -11.77100 -11.57142 -11.32301 -11.02620 -10.84051 -9.52022 -9.37922 -8.18129 -6.73485 0.38867 1.24101 1.41626 1.42081 1.56085 1.70454 2.27170 2.58568 2.91448 3.12493 3.35201 3.66016 3.87801 3.90732 4.18590 4.32622 4.71703 4.80646 4.85045 4.97285 5.11719 5.14238 5.22489 5.39067 5.47161 5.80232 5.97051 6.29890 6.34887 6.97109 7.46265 7.64508 8.62360 8.82570 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.028114 B = 0.009014 C = 0.007393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.707248 B = 3105.382983 C = 3786.638458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.036 3.964 3 Si 0.986 3.014 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.252 1.252 7 C -0.575 4.575 8 H 0.079 0.921 9 C 0.532 3.468 10 O -0.563 6.563 11 N -0.733 5.733 12 C 0.233 3.767 13 C 0.155 3.845 14 N -0.288 5.288 15 N -0.079 5.079 16 N -0.235 5.235 17 H 0.480 0.520 18 N -0.240 5.240 19 C -0.138 4.138 20 C -0.113 4.113 21 C -0.112 4.112 22 H 0.270 0.730 23 H 0.399 0.601 24 H 0.047 0.953 25 H 0.080 0.920 26 H 0.100 0.900 27 H 0.090 0.910 28 H 0.107 0.893 29 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.440 -8.454 -0.404 9.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.179 4.179 3 Si 0.807 3.193 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.175 1.175 7 C -0.612 4.612 8 H 0.097 0.903 9 C 0.334 3.666 10 O -0.443 6.443 11 N -0.389 5.389 12 C 0.141 3.859 13 C -0.129 4.129 14 N -0.162 5.162 15 N -0.073 5.073 16 N -0.084 5.084 17 H 0.336 0.664 18 N -0.092 5.092 19 C -0.178 4.178 20 C -0.150 4.150 21 C -0.150 4.150 22 H 0.079 0.921 23 H 0.234 0.766 24 H 0.066 0.934 25 H 0.099 0.901 26 H 0.119 0.881 27 H 0.108 0.892 28 H 0.125 0.875 29 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.076 -8.606 -0.863 8.895 hybrid contribution 0.062 1.582 -0.110 1.587 sum 2.138 -7.024 -0.974 7.407 Atomic orbital electron populations 1.70177 1.08970 1.28276 1.37094 1.26722 0.95445 1.04150 0.91631 0.85179 0.78970 0.76144 0.78975 1.19288 1.20074 1.17509 1.21359 0.94399 0.90345 1.55098 0.90303 1.18547 0.87682 0.83517 0.76899 1.90673 1.14253 1.86473 1.52887 1.45752 1.08902 1.03042 1.81205 1.19455 0.89432 0.87789 0.89270 1.26363 0.99549 0.86795 1.00241 1.75627 1.09804 1.25294 1.05487 1.78628 1.09119 0.99508 1.20074 1.48389 1.26347 1.10893 1.22735 0.66387 1.76231 1.05456 1.23939 1.03548 1.23352 0.99474 0.99747 0.95236 1.22776 0.95325 1.01489 0.95410 1.23195 0.99340 0.94971 0.97538 0.92052 0.76603 0.93399 0.90103 0.88126 0.89158 0.87464 0.88942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -48.40 11.83 21.84 0.26 -48.14 15 2 C 0.04 1.94 5.50 85.30 0.47 2.41 15 3 Si 0.99 40.75 29.56 68.60 2.03 42.77 15 4 H -0.27 -10.71 7.11 99.48 0.71 -10.00 15 5 H -0.28 -11.07 7.11 99.48 0.71 -10.36 15 6 H -0.25 -9.73 7.11 99.48 0.71 -9.02 15 7 C -0.57 -31.78 9.54 24.83 0.24 -31.54 15 8 H 0.08 3.96 7.85 -2.91 -0.02 3.94 15 9 C 0.53 29.29 7.44 86.36 0.64 29.93 15 10 O -0.56 -34.45 11.49 -4.29 -0.05 -34.50 15 11 N -0.73 -31.73 5.20 -428.17 -2.23 -33.96 15 12 C 0.23 8.86 1.11 3.38 0.00 8.86 15 13 C 0.15 6.57 7.03 138.55 0.97 7.54 15 14 N -0.29 -11.09 11.76 -51.26 -0.60 -11.70 15 15 N -0.08 -2.85 13.48 37.02 0.50 -2.35 15 16 N -0.23 -8.57 7.91 37.00 0.29 -8.28 15 17 H 0.48 13.29 8.96 -347.67 -3.12 10.17 15 18 N -0.24 -11.15 8.78 -51.20 -0.45 -11.60 15 19 C -0.14 -4.78 7.43 31.21 0.23 -4.55 15 20 C -0.11 -2.78 8.00 31.21 0.25 -2.53 15 21 C -0.11 -3.02 7.22 31.12 0.22 -2.80 15 22 H 0.27 14.68 8.29 -92.70 -0.77 13.91 15 23 H 0.40 14.83 8.61 -92.71 -0.80 14.03 15 24 H 0.05 1.94 8.14 -2.39 -0.02 1.93 15 25 H 0.08 2.68 8.09 -2.39 -0.02 2.67 15 26 H 0.10 1.89 8.14 -2.39 -0.02 1.87 15 27 H 0.09 2.14 8.14 -2.38 -0.02 2.12 15 28 H 0.11 2.76 7.62 -2.38 -0.02 2.74 15 29 H 0.09 2.17 8.11 -2.39 -0.02 2.15 15 Total: -1.00 -74.37 256.58 0.08 -74.29 By element: Atomic # 1 Polarization: 28.84 SS G_CDS: -2.70 Total: 26.14 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: 3.03 Total: 7.33 kcal Atomic # 7 Polarization: -113.79 SS G_CDS: -2.23 Total: -116.03 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -0.05 Total: -34.50 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.77 kcal Total: -74.37 0.08 -74.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593862942.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.061 kcal (2) G-P(sol) polarization free energy of solvation -74.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds