Wall clock time and date at job start Thu Apr 9 2020 12:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35365 * 127.24975 * 2 1 4 4 N 1.35033 * 107.22674 * 180.09133 * 3 2 1 5 5 H 0.97006 * 124.87795 * 179.89283 * 4 3 2 6 6 N 1.28462 * 110.23595 * 359.63185 * 4 3 2 7 7 C 1.31819 * 110.07080 * 0.22677 * 6 4 3 8 8 C 1.47708 * 126.51744 * 179.97438 * 7 6 4 9 9 O 1.21570 * 119.99811 * 175.00826 * 8 7 6 10 10 N 1.34778 * 120.00140 * 354.99989 * 8 7 6 11 11 C 1.46507 * 119.99866 * 2.72759 * 10 8 7 12 12 C 1.46494 * 120.00247 * 182.71788 * 10 8 7 13 13 H 1.09002 * 109.47097 * 0.02562 * 12 10 8 14 14 C 1.52998 * 109.47488 * 240.00430 * 12 10 8 15 15 C 1.50700 * 109.46961 * 120.00296 * 12 10 8 16 16 H 1.07994 * 120.00087 * 0.02562 * 15 12 10 17 17 C 1.37881 * 119.99697 * 180.02562 * 15 12 10 18 18 N 1.31506 * 120.00354 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 119.99671 * 180.02562 * 17 15 12 20 20 H 1.48504 * 109.47169 * 60.00116 * 19 17 15 21 21 H 1.48499 * 109.47257 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47321 * 300.00286 * 19 17 15 23 23 H 1.08995 * 109.47128 * 270.31028 * 1 2 3 24 24 H 1.08994 * 109.47009 * 30.31089 * 1 2 3 25 25 H 1.09000 * 109.46716 * 150.31019 * 1 2 3 26 26 H 1.08001 * 126.38251 * 359.97438 * 3 2 1 27 27 H 1.08995 * 109.47102 * 83.90257 * 11 10 8 28 28 H 1.08997 * 109.46939 * 203.90642 * 11 10 8 29 29 H 1.09000 * 109.46843 * 323.90051 * 11 10 8 30 30 H 1.08994 * 109.47325 * 299.99980 * 14 12 10 31 31 H 1.09007 * 109.47017 * 60.00188 * 14 12 10 32 32 H 1.09005 * 109.47110 * 179.97438 * 14 12 10 33 33 H 0.97000 * 120.00049 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3264 1.0775 0.0000 4 7 3.5951 0.6152 -0.0021 5 1 4.3888 1.1729 -0.0040 6 7 3.5999 -0.6694 0.0044 7 6 2.3635 -1.1264 0.0061 8 6 1.9505 -2.5446 0.0126 9 8 0.7736 -2.8346 0.1052 10 7 2.8786 -3.5171 -0.0843 11 6 4.3010 -3.1698 -0.1358 12 6 2.4651 -4.9215 -0.1379 13 1 1.3779 -4.9823 -0.0881 14 6 3.0734 -5.6778 1.0448 15 6 2.9436 -5.5371 -1.4276 16 1 3.5004 -4.9419 -2.1361 17 6 2.6705 -6.8603 -1.7028 18 7 1.9921 -7.5849 -0.8402 19 14 3.2643 -7.6236 -3.3010 20 1 4.7455 -7.5414 -3.3686 21 1 2.8440 -9.0468 -3.3561 22 1 2.6750 -6.8892 -4.4493 23 1 -0.3633 0.0056 1.0276 24 1 -0.3633 0.8871 -0.5186 25 1 -0.3633 -0.8928 -0.5090 26 1 2.0220 2.1138 -0.0004 27 1 4.6781 -3.0316 0.8774 28 1 4.8537 -3.9732 -0.6229 29 1 4.4292 -2.2463 -0.7004 30 1 4.1605 -5.6171 0.9946 31 1 2.7272 -5.2326 1.9776 32 1 2.7653 -6.7227 1.0051 33 1 1.7997 -8.5157 -1.0341 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259615022.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:04:49 Heat of formation + Delta-G solvation = 46.176784 kcal Electronic energy + Delta-G solvation = -17053.359290 eV Core-core repulsion = 14309.337454 eV Total energy + Delta-G solvation = -2744.021836 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 4.88 seconds Orbital eigenvalues (eV) -42.44517 -38.59549 -35.26519 -32.87570 -32.77380 -31.11516 -29.04131 -26.94872 -25.90156 -25.15393 -23.71786 -20.95206 -20.06267 -18.47968 -17.70846 -16.47621 -15.98875 -15.54863 -15.19739 -14.20302 -13.96917 -13.54979 -12.99658 -12.79893 -12.69068 -12.39846 -12.10734 -11.98569 -11.49897 -11.32031 -11.01082 -10.79770 -10.63024 -10.24210 -10.12392 -10.10149 -9.19252 -9.08605 -8.99506 -8.66032 -8.36569 -7.45136 -6.01087 -4.08666 1.94792 2.34745 3.03551 3.32512 3.37038 3.39401 4.02445 4.13658 4.45521 4.81268 4.92196 5.29681 5.39707 5.52219 5.73476 6.01261 6.11282 6.22376 6.33386 6.39129 6.62065 6.75025 6.86403 6.94687 7.12178 7.17837 7.54786 7.62115 7.78976 8.03470 8.12899 8.27095 8.63294 8.89861 9.14654 9.57384 11.04264 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.035704 B = 0.006653 C = 0.006442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.040261 B = 4207.788917 C = 4345.562224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.150 4.150 3 C -0.028 4.028 4 N -0.395 5.395 5 H 0.441 0.559 6 N -0.258 5.258 7 C 0.005 3.995 8 C 0.583 3.417 9 O -0.545 6.545 10 N -0.577 5.577 11 C 0.083 3.917 12 C 0.257 3.743 13 H 0.065 0.935 14 C -0.145 4.145 15 C -0.525 4.525 16 H 0.059 0.941 17 C 0.065 3.935 18 N -0.888 5.888 19 Si 0.899 3.101 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.277 1.277 23 H 0.065 0.935 24 H 0.057 0.943 25 H 0.084 0.916 26 H 0.178 0.822 27 H 0.039 0.961 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.029 0.971 31 H 0.011 0.989 32 H 0.093 0.907 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.479 15.863 1.971 16.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.161 4.161 3 C -0.173 4.173 4 N -0.107 5.107 5 H 0.285 0.715 6 N -0.093 5.093 7 C -0.157 4.157 8 C 0.368 3.632 9 O -0.422 6.422 10 N -0.307 5.307 11 C -0.061 4.061 12 C 0.158 3.842 13 H 0.082 0.918 14 C -0.204 4.204 15 C -0.564 4.564 16 H 0.077 0.923 17 C -0.137 4.137 18 N -0.526 5.526 19 Si 0.726 3.274 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.203 1.203 23 H 0.084 0.916 24 H 0.076 0.924 25 H 0.102 0.898 26 H 0.196 0.804 27 H 0.058 0.942 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.049 0.951 31 H 0.030 0.970 32 H 0.112 0.888 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.867 15.088 2.047 15.709 hybrid contribution 0.203 0.254 -0.854 0.914 sum 4.070 15.342 1.192 15.917 Atomic orbital electron populations 1.20142 0.88288 1.02854 1.02192 1.20417 0.97575 0.90619 1.07457 1.22597 0.84517 1.00177 1.09968 1.43385 1.08180 1.04975 1.54210 0.71508 1.73858 1.23113 0.92827 1.19529 1.22361 0.88974 0.96045 1.08298 1.16989 0.85765 0.82287 0.78170 1.90710 1.17050 1.82282 1.52169 1.48135 1.05923 1.08254 1.68344 1.21860 0.82167 1.01524 1.00563 1.18986 0.97582 0.73370 0.94309 0.91766 1.22075 0.98702 1.03949 0.95652 1.21304 1.36137 0.95762 1.03170 0.92257 1.24883 0.94964 0.96925 0.96970 1.69872 1.39258 1.08391 1.35120 0.86552 0.79019 0.78108 0.83671 1.20263 1.21174 1.20271 0.91638 0.92443 0.89753 0.80447 0.94249 0.90726 0.90438 0.95137 0.96967 0.88826 0.92660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.09 9.89 36.01 0.36 -0.73 16 2 C -0.15 -2.32 6.25 -104.40 -0.65 -2.97 16 3 C -0.03 -0.32 11.97 -17.17 -0.21 -0.52 16 4 N -0.39 -4.42 6.83 30.47 0.21 -4.22 16 5 H 0.44 2.94 8.96 -190.44 -1.71 1.23 16 6 N -0.26 -4.09 8.75 33.42 0.29 -3.80 16 7 C 0.00 0.09 6.83 -82.76 -0.57 -0.48 16 8 C 0.58 13.48 7.68 -12.39 -0.10 13.38 16 9 O -0.54 -14.00 14.51 5.30 0.08 -13.92 16 10 N -0.58 -13.54 2.75 -176.43 -0.49 -14.03 16 11 C 0.08 1.63 8.54 59.85 0.51 2.14 16 12 C 0.26 6.90 2.63 -69.09 -0.18 6.72 16 13 H 0.06 1.96 6.90 -51.93 -0.36 1.60 16 14 C -0.15 -3.64 8.97 37.16 0.33 -3.31 16 15 C -0.53 -14.69 7.95 -34.44 -0.27 -14.96 16 16 H 0.06 1.64 7.44 -52.49 -0.39 1.25 16 17 C 0.06 1.81 5.30 -17.82 -0.09 1.71 16 18 N -0.89 -25.60 11.32 55.43 0.63 -24.97 16 19 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.08 1.43 6.82 -51.93 -0.35 1.08 16 26 H 0.18 1.18 8.06 -52.49 -0.42 0.75 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 1.51 7.12 -51.93 -0.37 1.14 16 29 H 0.08 1.41 5.38 -51.93 -0.28 1.13 16 30 H 0.03 0.71 7.67 -51.93 -0.40 0.31 16 31 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.09 2.53 6.07 -51.93 -0.32 2.22 16 33 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 276.33 15.07 4.16 4.16 Total: -1.00 -33.18 276.33 -6.43 -39.61 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -5.42 Total: -0.28 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -0.87 Total: 0.98 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: 0.64 Total: -47.01 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: 0.08 Total: -13.92 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -33.18 -6.43 -39.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259615022.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.787 kcal (2) G-P(sol) polarization free energy of solvation -33.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.88 seconds