Wall clock time and date at job start Thu Apr 9 2020 12:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35365 * 127.24975 * 2 1 4 4 N 1.35033 * 107.22674 * 180.09133 * 3 2 1 5 5 H 0.97006 * 124.87795 * 179.89283 * 4 3 2 6 6 N 1.28462 * 110.23595 * 359.63185 * 4 3 2 7 7 C 1.31819 * 110.07080 * 0.22677 * 6 4 3 8 8 C 1.47708 * 126.51744 * 179.97438 * 7 6 4 9 9 O 1.21570 * 119.99811 * 175.00826 * 8 7 6 10 10 N 1.34778 * 120.00140 * 354.99989 * 8 7 6 11 11 C 1.46507 * 119.99866 * 2.72759 * 10 8 7 12 12 C 1.46494 * 120.00247 * 182.71788 * 10 8 7 13 13 H 1.09002 * 109.47097 * 0.02562 * 12 10 8 14 14 C 1.52998 * 109.47488 * 240.00430 * 12 10 8 15 15 C 1.50700 * 109.46961 * 120.00296 * 12 10 8 16 16 H 1.07994 * 120.00087 * 0.02562 * 15 12 10 17 17 C 1.37881 * 119.99697 * 180.02562 * 15 12 10 18 18 N 1.31506 * 120.00354 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 119.99671 * 180.02562 * 17 15 12 20 20 H 1.48504 * 109.47169 * 60.00116 * 19 17 15 21 21 H 1.48499 * 109.47257 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47321 * 300.00286 * 19 17 15 23 23 H 1.08995 * 109.47128 * 270.31028 * 1 2 3 24 24 H 1.08994 * 109.47009 * 30.31089 * 1 2 3 25 25 H 1.09000 * 109.46716 * 150.31019 * 1 2 3 26 26 H 1.08001 * 126.38251 * 359.97438 * 3 2 1 27 27 H 1.08995 * 109.47102 * 83.90257 * 11 10 8 28 28 H 1.08997 * 109.46939 * 203.90642 * 11 10 8 29 29 H 1.09000 * 109.46843 * 323.90051 * 11 10 8 30 30 H 1.08994 * 109.47325 * 299.99980 * 14 12 10 31 31 H 1.09007 * 109.47017 * 60.00188 * 14 12 10 32 32 H 1.09005 * 109.47110 * 179.97438 * 14 12 10 33 33 H 0.97000 * 120.00049 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3264 1.0775 0.0000 4 7 3.5951 0.6152 -0.0021 5 1 4.3888 1.1729 -0.0040 6 7 3.5999 -0.6694 0.0044 7 6 2.3635 -1.1264 0.0061 8 6 1.9505 -2.5446 0.0126 9 8 0.7736 -2.8346 0.1052 10 7 2.8786 -3.5171 -0.0843 11 6 4.3010 -3.1698 -0.1358 12 6 2.4651 -4.9215 -0.1379 13 1 1.3779 -4.9823 -0.0881 14 6 3.0734 -5.6778 1.0448 15 6 2.9436 -5.5371 -1.4276 16 1 3.5004 -4.9419 -2.1361 17 6 2.6705 -6.8603 -1.7028 18 7 1.9921 -7.5849 -0.8402 19 14 3.2643 -7.6236 -3.3010 20 1 4.7455 -7.5414 -3.3686 21 1 2.8440 -9.0468 -3.3561 22 1 2.6750 -6.8892 -4.4493 23 1 -0.3633 0.0056 1.0276 24 1 -0.3633 0.8871 -0.5186 25 1 -0.3633 -0.8928 -0.5090 26 1 2.0220 2.1138 -0.0004 27 1 4.6781 -3.0316 0.8774 28 1 4.8537 -3.9732 -0.6229 29 1 4.4292 -2.2463 -0.7004 30 1 4.1605 -5.6171 0.9946 31 1 2.7272 -5.2326 1.9776 32 1 2.7653 -6.7227 1.0051 33 1 1.7997 -8.5157 -1.0341 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259615022.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:04:48 Heat of formation + Delta-G solvation = 22.626968 kcal Electronic energy + Delta-G solvation = -17054.380487 eV Core-core repulsion = 14309.337454 eV Total energy + Delta-G solvation = -2745.043033 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.57236 -40.38145 -37.17209 -34.86329 -33.91351 -32.54659 -30.86839 -28.10151 -27.51463 -27.31111 -25.26945 -22.52572 -21.38334 -19.98275 -18.88081 -18.49176 -17.67299 -17.12267 -16.83689 -16.11379 -15.60852 -14.92101 -14.40393 -14.31962 -14.08109 -13.90829 -13.70940 -13.49315 -13.30558 -12.97193 -12.75245 -12.68955 -12.61681 -12.19912 -12.11332 -11.53365 -11.18873 -10.80286 -10.51147 -10.31812 -9.76355 -9.29679 -8.14490 -6.31473 0.63967 1.25688 1.41448 1.44331 1.52025 2.04182 2.35430 2.49617 2.56193 3.12848 3.49250 3.99348 4.16305 4.54111 4.58924 4.65461 4.75585 4.77201 4.89255 4.93614 5.00542 5.04934 5.16108 5.24498 5.44899 5.57105 5.64024 5.67358 6.01935 6.15291 6.29641 6.74666 6.77418 6.97365 7.29708 7.45748 8.90172 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.035704 B = 0.006653 C = 0.006442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.040261 B = 4207.788917 C = 4345.562224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.182 4.182 3 C 0.014 3.986 4 N -0.366 5.366 5 H 0.465 0.535 6 N -0.267 5.267 7 C -0.037 4.037 8 C 0.572 3.428 9 O -0.588 6.588 10 N -0.588 5.588 11 C 0.090 3.910 12 C 0.261 3.739 13 H 0.013 0.987 14 C -0.130 4.130 15 C -0.542 4.542 16 H 0.058 0.942 17 C 0.016 3.984 18 N -0.916 5.916 19 Si 0.968 3.032 20 H -0.263 1.263 21 H -0.280 1.280 22 H -0.277 1.277 23 H 0.065 0.935 24 H 0.095 0.905 25 H 0.042 0.958 26 H 0.237 0.763 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.095 0.905 30 H 0.044 0.956 31 H 0.018 0.982 32 H 0.072 0.928 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.258 18.639 1.317 19.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.192 4.192 3 C -0.131 4.131 4 N -0.082 5.082 5 H 0.314 0.686 6 N -0.105 5.105 7 C -0.196 4.196 8 C 0.359 3.641 9 O -0.469 6.469 10 N -0.318 5.318 11 C -0.053 4.053 12 C 0.160 3.840 13 H 0.031 0.969 14 C -0.189 4.189 15 C -0.581 4.581 16 H 0.076 0.924 17 C -0.183 4.183 18 N -0.555 5.555 19 Si 0.792 3.208 20 H -0.187 1.187 21 H -0.205 1.205 22 H -0.203 1.203 23 H 0.084 0.916 24 H 0.114 0.886 25 H 0.061 0.939 26 H 0.253 0.747 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.113 0.887 30 H 0.063 0.937 31 H 0.037 0.963 32 H 0.090 0.910 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.698 17.890 1.401 18.828 hybrid contribution -0.349 -0.461 -0.614 0.843 sum 5.349 17.429 0.787 18.248 Atomic orbital electron populations 1.20087 0.88164 1.02598 1.02217 1.20722 0.98296 0.90902 1.09330 1.23260 0.82976 1.01363 1.05493 1.43504 1.09727 1.03769 1.51220 0.68607 1.73662 1.21795 0.95106 1.19922 1.21796 0.91114 0.94199 1.12472 1.17669 0.85135 0.84274 0.76990 1.90665 1.18793 1.83520 1.53885 1.48142 1.07664 1.07144 1.68817 1.21951 0.79790 1.01890 1.01699 1.18621 0.94723 0.75853 0.94844 0.96882 1.21865 0.99335 1.02341 0.95337 1.21521 1.36517 0.96296 1.03732 0.92368 1.25749 0.94878 0.97300 1.00411 1.70011 1.39903 1.08684 1.36906 0.85475 0.79126 0.77165 0.79036 1.18743 1.20513 1.20266 0.91591 0.88630 0.93911 0.74712 0.92733 0.91566 0.88701 0.93667 0.96321 0.90968 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.01 9.89 71.24 0.70 -1.31 16 2 C -0.18 -5.27 6.25 -19.72 -0.12 -5.39 16 3 C 0.01 0.24 11.97 83.54 1.00 1.24 16 4 N -0.37 -6.56 6.83 -57.51 -0.39 -6.95 16 5 H 0.47 3.69 8.96 -219.99 -1.97 1.72 16 6 N -0.27 -7.86 8.75 -48.17 -0.42 -8.28 16 7 C -0.04 -1.38 6.83 42.45 0.29 -1.09 16 8 C 0.57 27.60 7.68 86.75 0.67 28.27 16 9 O -0.59 -32.44 14.51 -3.94 -0.06 -32.50 16 10 N -0.59 -28.55 2.75 -830.37 -2.29 -30.84 16 11 C 0.09 3.49 8.54 127.77 1.09 4.58 16 12 C 0.26 14.67 2.63 44.25 0.12 14.79 16 13 H 0.01 0.87 6.90 -2.39 -0.02 0.85 16 14 C -0.13 -6.75 8.97 71.98 0.65 -6.10 16 15 C -0.54 -31.18 7.95 25.60 0.20 -30.98 16 16 H 0.06 3.27 7.44 -2.91 -0.02 3.25 16 17 C 0.02 0.93 5.30 84.66 0.45 1.38 16 18 N -0.92 -54.33 11.32 21.45 0.24 -54.09 16 19 Si 0.97 44.33 29.54 68.60 2.03 46.36 16 20 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 21 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 23 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.04 1.52 6.82 -2.39 -0.02 1.51 16 26 H 0.24 1.29 8.06 -2.91 -0.02 1.26 16 27 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.07 2.66 7.12 -2.39 -0.02 2.64 16 29 H 0.09 3.36 5.38 -2.39 -0.01 3.34 16 30 H 0.04 2.14 7.67 -2.39 -0.02 2.12 16 31 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.07 4.05 6.07 -2.38 -0.01 4.04 16 33 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -77.45 276.33 3.32 -74.13 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -0.84 Total: 6.77 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: 5.04 Total: 5.39 kcal Atomic # 7 Polarization: -97.30 SS G_CDS: -2.86 Total: -100.16 kcal Atomic # 8 Polarization: -32.44 SS G_CDS: -0.06 Total: -32.50 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -77.45 3.32 -74.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259615022.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.760 kcal (2) G-P(sol) polarization free energy of solvation -77.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds