Wall clock time and date at job start Thu Apr 9 2020 12:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35367 * 127.24837 * 2 1 4 4 N 1.35043 * 107.22656 * 180.14113 * 3 2 1 5 5 H 0.97001 * 124.88108 * 179.87551 * 4 3 2 6 6 N 1.28467 * 110.23247 * 359.60119 * 4 3 2 7 7 C 1.31811 * 110.07327 * 0.25150 * 6 4 3 8 8 C 1.47710 * 126.52086 * 179.97438 * 7 6 4 9 9 O 1.21570 * 120.00334 * 175.03674 * 8 7 6 10 10 N 1.34781 * 119.99614 * 355.02990 * 8 7 6 11 11 C 1.46497 * 120.00211 * 2.64954 * 10 8 7 12 12 C 1.46494 * 119.99797 * 182.64359 * 10 8 7 13 13 H 1.09004 * 109.47383 * 0.02562 * 12 10 8 14 14 C 1.52998 * 109.46978 * 120.00395 * 12 10 8 15 15 C 1.50701 * 109.47307 * 240.00325 * 12 10 8 16 16 H 1.07996 * 119.99762 * 359.97438 * 15 12 10 17 17 C 1.37877 * 119.99987 * 180.02562 * 15 12 10 18 18 N 1.31519 * 120.00338 * 359.97438 * 17 15 12 19 19 Si 1.86808 * 119.99997 * 180.02562 * 17 15 12 20 20 H 1.48495 * 109.47252 * 89.99690 * 19 17 15 21 21 H 1.48497 * 109.46963 * 210.00162 * 19 17 15 22 22 H 1.48500 * 109.46866 * 329.99843 * 19 17 15 23 23 H 1.08995 * 109.47482 * 270.28103 * 1 2 3 24 24 H 1.08997 * 109.47404 * 30.28817 * 1 2 3 25 25 H 1.09011 * 109.47134 * 150.28416 * 1 2 3 26 26 H 1.07996 * 126.38387 * 0.02562 * 3 2 1 27 27 H 1.09003 * 109.47277 * 83.90721 * 11 10 8 28 28 H 1.08994 * 109.47601 * 203.91018 * 11 10 8 29 29 H 1.09004 * 109.46855 * 323.91170 * 11 10 8 30 30 H 1.09001 * 109.47110 * 299.99788 * 14 12 10 31 31 H 1.08996 * 109.47265 * 60.00020 * 14 12 10 32 32 H 1.09005 * 109.47218 * 179.97438 * 14 12 10 33 33 H 0.96998 * 120.00070 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0775 0.0000 4 7 3.5951 0.6152 -0.0032 5 1 4.3888 1.1729 -0.0056 6 7 3.5999 -0.6695 0.0033 7 6 2.3635 -1.1264 0.0055 8 6 1.9505 -2.5446 0.0121 9 8 0.7736 -2.8346 0.1047 10 7 2.8786 -3.5171 -0.0846 11 6 4.3008 -3.1698 -0.1378 12 6 2.4652 -4.9216 -0.1365 13 1 1.3780 -4.9825 -0.0856 14 6 2.9499 -5.5479 -1.4455 15 6 3.0654 -5.6653 1.0287 16 1 3.6925 -5.1440 1.7368 17 6 2.8148 -7.0115 1.1902 18 7 2.0516 -7.6464 0.3277 19 14 3.5583 -7.9332 2.6349 20 1 2.6281 -7.8749 3.7909 21 1 3.7859 -9.3503 2.2537 22 1 4.8521 -7.3072 3.0085 23 1 -0.3634 0.0050 1.0276 24 1 -0.3634 0.8873 -0.5183 25 1 -0.3634 -0.8926 -0.5095 26 1 2.0220 2.1137 0.0004 27 1 4.6790 -3.0306 0.8750 28 1 4.8532 -3.9735 -0.6246 29 1 4.4285 -2.2468 -0.7034 30 1 2.5157 -5.0100 -2.2883 31 1 4.0370 -5.4870 -1.4968 32 1 2.6427 -6.5930 -1.4839 33 1 1.8750 -8.5934 0.4415 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259615026.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:04:55 Heat of formation + Delta-G solvation = 47.011252 kcal Electronic energy + Delta-G solvation = -17049.224040 eV Core-core repulsion = 14305.238389 eV Total energy + Delta-G solvation = -2743.985651 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 2.49 seconds Orbital eigenvalues (eV) -42.44846 -38.59811 -35.27254 -32.87217 -32.77836 -31.11727 -29.03998 -26.95329 -25.93140 -25.14640 -23.72407 -20.94502 -20.05869 -18.47538 -17.71072 -16.47826 -15.97400 -15.58632 -15.18715 -14.21085 -13.95157 -13.55851 -13.00621 -12.78349 -12.70584 -12.48847 -12.10544 -12.01307 -11.49407 -11.30739 -10.99049 -10.77058 -10.66054 -10.18807 -10.17080 -10.06508 -9.17424 -9.11039 -8.98272 -8.66730 -8.35934 -7.44802 -6.00327 -4.07507 1.94407 2.34227 3.03084 3.32353 3.38348 3.41145 4.04768 4.10712 4.46546 4.81055 4.91732 5.30578 5.38953 5.51608 5.73021 6.01080 6.09634 6.17747 6.35158 6.40553 6.58248 6.73316 6.86295 6.92827 7.12465 7.15237 7.55281 7.61065 7.79589 8.03810 8.12095 8.27623 8.63446 8.91388 9.14759 9.58612 11.05060 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.037169 B = 0.006609 C = 0.006343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.131923 B = 4235.602025 C = 4413.384903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.151 4.151 3 C -0.028 4.028 4 N -0.395 5.395 5 H 0.442 0.558 6 N -0.257 5.257 7 C 0.005 3.995 8 C 0.583 3.417 9 O -0.544 6.544 10 N -0.577 5.577 11 C 0.086 3.914 12 C 0.257 3.743 13 H 0.065 0.935 14 C -0.147 4.147 15 C -0.522 4.522 16 H 0.059 0.941 17 C 0.064 3.936 18 N -0.889 5.889 19 Si 0.899 3.101 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.275 1.275 23 H 0.066 0.934 24 H 0.056 0.944 25 H 0.083 0.917 26 H 0.178 0.822 27 H 0.044 0.956 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.012 0.988 31 H 0.030 0.970 32 H 0.094 0.906 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.273 16.137 -2.082 16.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.161 4.161 3 C -0.172 4.172 4 N -0.108 5.108 5 H 0.285 0.715 6 N -0.093 5.093 7 C -0.157 4.157 8 C 0.367 3.633 9 O -0.421 6.421 10 N -0.307 5.307 11 C -0.058 4.058 12 C 0.157 3.843 13 H 0.083 0.917 14 C -0.205 4.205 15 C -0.561 4.561 16 H 0.077 0.923 17 C -0.138 4.138 18 N -0.528 5.528 19 Si 0.726 3.274 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.200 1.200 23 H 0.084 0.916 24 H 0.075 0.925 25 H 0.102 0.898 26 H 0.196 0.804 27 H 0.063 0.937 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.031 0.969 31 H 0.050 0.950 32 H 0.113 0.887 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.664 15.370 -2.077 15.936 hybrid contribution 0.278 0.148 0.853 0.910 sum 3.942 15.518 -1.224 16.058 Atomic orbital electron populations 1.20140 0.88288 1.02743 1.02286 1.20417 0.97569 0.90622 1.07480 1.22599 0.84516 1.00176 1.09958 1.43389 1.08181 1.04972 1.54214 0.71502 1.73856 1.23114 0.92826 1.19503 1.22364 0.88973 0.96046 1.08308 1.16984 0.85785 0.82271 0.78218 1.90713 1.17109 1.82267 1.52030 1.48130 1.05901 1.08203 1.68467 1.21820 0.82098 1.00675 1.01191 1.18995 0.97864 0.73537 0.93917 0.91745 1.22101 0.98661 1.03851 0.95920 1.21335 1.31085 0.93947 1.09698 0.92261 1.24887 0.95109 0.97368 0.96447 1.69883 1.37278 1.10021 1.35588 0.86492 0.79467 0.78847 0.82564 1.20628 1.21153 1.19963 0.91574 0.92460 0.89823 0.80446 0.93732 0.91398 0.90603 0.96918 0.95049 0.88732 0.92748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.08 9.89 36.00 0.36 -0.72 16 2 C -0.15 -2.31 6.25 -104.40 -0.65 -2.96 16 3 C -0.03 -0.31 11.97 -17.16 -0.21 -0.52 16 4 N -0.40 -4.40 6.83 30.47 0.21 -4.19 16 5 H 0.44 2.92 8.96 -190.44 -1.71 1.22 16 6 N -0.26 -4.07 8.75 33.42 0.29 -3.78 16 7 C 0.00 0.09 6.83 -82.76 -0.57 -0.48 16 8 C 0.58 13.45 7.68 -12.39 -0.10 13.35 16 9 O -0.54 -13.99 14.51 5.30 0.08 -13.91 16 10 N -0.58 -13.54 2.75 -176.43 -0.49 -14.02 16 11 C 0.09 1.69 8.81 59.85 0.53 2.22 16 12 C 0.26 6.88 2.63 -69.09 -0.18 6.70 16 13 H 0.06 1.96 6.90 -51.93 -0.36 1.60 16 14 C -0.15 -3.65 8.96 37.16 0.33 -3.32 16 15 C -0.52 -14.71 8.37 -34.44 -0.29 -15.00 16 16 H 0.06 1.67 7.65 -52.49 -0.40 1.27 16 17 C 0.06 1.79 5.30 -17.82 -0.09 1.70 16 18 N -0.89 -25.69 11.32 55.43 0.63 -25.06 16 19 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 23 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.08 1.39 6.83 -51.92 -0.35 1.04 16 26 H 0.18 1.16 8.06 -52.49 -0.42 0.74 16 27 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.07 1.32 6.44 -51.93 -0.33 0.98 16 29 H 0.08 1.34 5.38 -51.93 -0.28 1.06 16 30 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.03 0.72 6.67 -51.93 -0.35 0.37 16 32 H 0.09 2.54 6.07 -51.93 -0.32 2.23 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 275.53 15.07 4.15 4.15 Total: -1.00 -33.38 275.53 -6.36 -39.74 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -5.35 Total: -0.51 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -0.87 Total: 0.97 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: 0.64 Total: -47.06 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: 0.08 Total: -13.91 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -33.38 -6.36 -39.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259615026.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.756 kcal (2) G-P(sol) polarization free energy of solvation -33.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.49 seconds