Wall clock time and date at job start Thu Apr 9 2020 12:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47233 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46997 * 120.00173 * 8 6 4 11 11 H 1.48501 * 109.47364 * 240.00497 * 8 6 4 12 12 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 13 13 C 1.46502 * 119.99711 * 60.00297 * 12 2 1 14 14 C 1.34769 * 120.00163 * 240.00131 * 12 2 1 15 15 O 1.21279 * 120.00303 * 0.02562 * 14 12 2 16 16 C 1.50701 * 119.99833 * 179.97438 * 14 12 2 17 17 C 1.50708 * 109.47205 * 180.02562 * 16 14 12 18 18 C 1.34506 * 125.78894 * 89.71197 * 17 16 14 19 19 C 1.41385 * 106.84198 * 179.89341 * 18 17 16 20 20 C 1.34517 * 106.83562 * 0.37549 * 19 18 17 21 21 O 1.34296 * 108.42391 * 359.76925 * 20 19 18 22 22 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 25 25 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 26 26 H 1.08993 * 109.47565 * 90.00263 * 13 12 2 27 27 H 1.09007 * 109.46761 * 210.00296 * 13 12 2 28 28 H 1.09002 * 109.46792 * 329.99948 * 13 12 2 29 29 H 1.09000 * 109.47080 * 299.99533 * 16 14 12 30 30 H 1.08993 * 109.47251 * 60.00389 * 16 14 12 31 31 H 1.08006 * 126.58471 * 0.02867 * 18 17 16 32 32 H 1.07996 * 126.58415 * 180.16755 * 19 18 17 33 33 H 1.08003 * 125.78704 * 179.75656 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.1455 -2.2874 -3.6040 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1871 -4.8166 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0933 1.4279 14 6 2.7932 -0.0357 2.0832 15 8 3.0858 1.1256 1.8917 16 6 3.2951 -0.7460 3.3139 17 6 4.1320 0.2013 4.1346 18 6 3.6768 1.0146 5.1044 19 6 4.7950 1.7193 5.6065 20 6 5.8653 1.3004 4.9076 21 8 5.4578 0.3810 4.0176 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 0.7093 1.1619 -3.4844 26 1 2.4158 -2.7377 0.9716 27 1 1.6239 -2.2853 2.5001 28 1 0.6905 -2.3002 0.9845 29 1 2.4471 -1.0881 3.9072 30 1 3.9005 -1.6025 3.0176 31 1 2.6537 1.1096 5.4375 32 1 4.7902 2.4552 6.3968 33 1 6.8803 1.6451 5.0398 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259736254.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:05:14 Heat of formation + Delta-G solvation = -18.228159 kcal Electronic energy + Delta-G solvation = -16772.420315 eV Core-core repulsion = 13993.312920 eV Total energy + Delta-G solvation = -2779.107395 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.33816 -39.00943 -35.36197 -33.10337 -32.78445 -31.75156 -29.38514 -26.76810 -26.05720 -25.19556 -21.64529 -21.52867 -20.16709 -18.40864 -17.11258 -16.73864 -16.24598 -15.57625 -15.07006 -14.93678 -14.43455 -13.94260 -12.92446 -12.80048 -12.63892 -12.60322 -12.47978 -12.25303 -11.63882 -11.49664 -11.44262 -11.06444 -10.79993 -10.69505 -10.23745 -10.17035 -9.70353 -9.19319 -9.03891 -8.43273 -8.21034 -7.60184 -6.06980 -4.14939 1.93255 2.81046 3.16476 3.26297 3.32877 3.35473 3.39498 4.02336 4.40603 4.79666 5.14674 5.20363 5.21828 5.26236 5.43096 5.48736 5.71856 5.97323 6.04167 6.10551 6.27909 6.28747 6.69183 6.76179 6.81526 7.05179 7.34555 7.42083 7.51896 7.71717 8.01669 8.19478 8.50857 8.83555 9.03502 9.51666 10.98441 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.037962 B = 0.005843 C = 0.005661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.395671 B = 4790.969804 C = 4944.642388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.063 0.937 4 C -0.524 4.524 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.593 5.593 13 C 0.084 3.916 14 C 0.504 3.496 15 O -0.542 6.542 16 C -0.064 4.064 17 C 0.020 3.980 18 C -0.205 4.205 19 C -0.213 4.213 20 C -0.047 4.047 21 O -0.172 6.172 22 H 0.011 0.989 23 H 0.030 0.970 24 H 0.094 0.906 25 H 0.263 0.737 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.074 0.926 29 H 0.117 0.883 30 H 0.105 0.895 31 H 0.144 0.856 32 H 0.145 0.855 33 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.620 -4.430 13.358 14.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.157 3.843 3 H 0.081 0.919 4 C -0.563 4.563 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.325 5.325 13 C -0.060 4.060 14 C 0.289 3.711 15 O -0.420 6.420 16 C -0.104 4.104 17 C -0.030 4.030 18 C -0.225 4.225 19 C -0.233 4.233 20 C -0.114 4.114 21 O -0.068 6.068 22 H 0.031 0.969 23 H 0.049 0.951 24 H 0.112 0.888 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.093 0.907 29 H 0.135 0.865 30 H 0.124 0.876 31 H 0.162 0.838 32 H 0.163 0.837 33 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 3.847 -3.857 12.871 13.977 hybrid contribution 0.203 -0.351 -0.739 0.843 sum 4.050 -4.208 12.132 13.465 Atomic orbital electron populations 1.22093 0.98168 0.99369 1.00892 1.18965 0.90884 0.94573 0.79903 0.91881 1.21357 1.31718 1.12964 0.90269 0.92210 1.24901 0.94964 0.94987 0.99005 1.69887 1.36476 1.22633 1.23658 0.86431 0.78584 0.79582 0.82735 1.19814 1.20933 1.20918 1.48225 1.48978 1.11698 1.23555 1.21601 1.01861 0.83177 0.99336 1.20117 0.79590 0.87232 0.84116 1.90689 1.57813 1.16958 1.76558 1.20243 0.98254 0.96866 0.95076 1.21687 0.81265 1.01404 0.98694 1.21467 1.00101 1.00170 1.00725 1.21744 0.92624 1.04585 1.04302 1.23915 1.00220 0.94483 0.92807 1.83995 1.23575 1.49376 1.49832 0.96942 0.95057 0.88786 0.92737 0.93125 0.92897 0.90684 0.86533 0.87640 0.83773 0.83747 0.78410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 8.95 37.16 0.33 -3.17 16 2 C 0.26 6.61 2.64 -69.08 -0.18 6.43 16 3 H 0.06 1.90 6.90 -51.93 -0.36 1.54 16 4 C -0.52 -14.27 8.37 -34.44 -0.29 -14.55 16 5 H 0.06 1.60 7.65 -52.49 -0.40 1.20 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.32 11.32 55.43 0.63 -24.70 16 8 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 9 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 N -0.59 -12.57 2.75 -175.26 -0.48 -13.06 16 13 C 0.08 1.35 9.48 59.85 0.57 1.92 16 14 C 0.50 10.55 7.67 -10.99 -0.08 10.46 16 15 O -0.54 -13.92 15.36 5.56 0.09 -13.84 16 16 C -0.06 -0.97 4.79 -29.03 -0.14 -1.11 16 17 C 0.02 0.33 5.81 -35.62 -0.21 0.13 16 18 C -0.21 -3.11 10.81 -39.70 -0.43 -3.54 16 19 C -0.21 -2.88 10.91 -39.70 -0.43 -3.31 16 20 C -0.05 -0.62 12.09 29.42 0.36 -0.27 16 21 O -0.17 -2.87 10.65 5.72 0.06 -2.81 16 22 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 23 H 0.03 0.68 6.66 -51.93 -0.35 0.33 16 24 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 25 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.63 6.44 -51.92 -0.33 0.29 16 28 H 0.07 1.22 6.43 -51.93 -0.33 0.89 16 29 H 0.12 1.35 7.40 -51.93 -0.38 0.97 16 30 H 0.11 1.38 8.11 -51.93 -0.42 0.96 16 31 H 0.14 1.92 8.06 -52.48 -0.42 1.50 16 32 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 33 H 0.20 1.79 8.06 -52.48 -0.42 1.36 16 LS Contribution 282.18 15.07 4.25 4.25 Total: -1.00 -33.28 282.18 -5.22 -38.50 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -4.14 Total: 0.88 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: -0.60 Total: -5.37 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.15 Total: -37.75 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: 0.15 Total: -16.64 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -33.28 -5.22 -38.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259736254.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.274 kcal (2) G-P(sol) polarization free energy of solvation -33.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds