Wall clock time and date at job start Thu Apr 9 2020 12:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 5 5 H 1.07999 * 120.00019 * 120.00027 * 4 2 1 6 6 C 1.37879 * 119.99908 * 300.00133 * 4 2 1 7 7 N 1.31510 * 120.00364 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99946 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47324 * 59.99539 * 8 6 4 10 10 H 1.48494 * 109.47376 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46921 * 299.99915 * 8 6 4 12 12 N 1.46496 * 109.46995 * 239.99855 * 2 1 3 13 13 C 1.46500 * 119.99935 * 299.99945 * 12 2 1 14 14 C 1.34772 * 119.99939 * 120.00347 * 12 2 1 15 15 O 1.21280 * 120.00232 * 0.02562 * 14 12 2 16 16 C 1.50703 * 120.00049 * 179.97438 * 14 12 2 17 17 C 1.50703 * 109.47204 * 180.02562 * 16 14 12 18 18 C 1.34506 * 125.79421 * 89.70910 * 17 16 14 19 19 C 1.41383 * 106.84284 * 179.89108 * 18 17 16 20 20 C 1.34509 * 106.84213 * 0.37640 * 19 18 17 21 21 O 1.34304 * 125.78709 * 270.02367 * 17 16 14 22 22 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 23 23 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 25 25 H 0.96999 * 120.00396 * 180.02562 * 7 6 4 26 26 H 1.08998 * 109.46877 * 90.00284 * 13 12 2 27 27 H 1.09004 * 109.46845 * 210.00304 * 13 12 2 28 28 H 1.08994 * 109.47249 * 330.00535 * 13 12 2 29 29 H 1.09005 * 109.46894 * 299.99577 * 16 14 12 30 30 H 1.08992 * 109.46945 * 59.99855 * 16 14 12 31 31 H 1.08004 * 126.57608 * 0.03592 * 18 17 16 32 32 H 1.08005 * 126.58009 * 180.16911 * 19 18 17 33 33 H 1.08001 * 125.79380 * 179.75197 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.8074 -1.1190 4.0079 10 1 1.8277 -0.4192 5.2205 11 1 1.8279 -2.5197 4.0082 12 7 2.0184 -0.6906 -1.1961 13 6 1.6644 -2.0932 -1.4279 14 6 2.7932 -0.0357 -2.0832 15 8 3.0867 1.1253 -1.8911 16 6 3.2960 -0.7463 -3.3134 17 6 4.1337 0.2007 -4.1335 18 6 5.4607 0.3841 -4.0119 19 6 5.8300 1.3534 -4.9726 20 6 4.7053 1.7106 -5.6182 21 8 3.6810 1.0092 -5.1057 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.7094 1.1619 3.4844 26 1 0.7376 -2.1444 -1.9992 27 1 2.4629 -2.5819 -1.9862 28 1 1.5294 -2.5968 -0.4707 29 1 3.9018 -1.6024 -3.0164 30 1 2.4485 -1.0892 -3.9068 31 1 6.1183 -0.1153 -3.3157 32 1 6.8239 1.7364 -5.1514 33 1 4.6373 2.4382 -6.4134 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259736256.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:05:18 Heat of formation + Delta-G solvation = -18.975774 kcal Electronic energy + Delta-G solvation = -16772.089135 eV Core-core repulsion = 13992.949320 eV Total energy + Delta-G solvation = -2779.139814 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.33664 -39.00400 -35.35273 -33.09982 -32.78314 -31.75087 -29.38399 -26.77381 -26.00974 -25.20780 -21.63766 -21.53376 -20.16759 -18.41213 -17.11073 -16.73500 -16.25204 -15.57300 -15.11479 -14.92193 -14.38981 -13.89720 -13.04693 -12.71998 -12.62597 -12.52807 -12.45000 -12.24935 -11.59792 -11.53260 -11.46918 -11.04360 -10.84491 -10.68931 -10.26289 -10.16707 -9.69851 -9.21979 -9.03190 -8.43000 -8.20658 -7.60398 -6.07162 -4.15555 1.93122 2.82002 3.15534 3.27577 3.32964 3.33583 3.38176 4.02042 4.40063 4.80093 5.15939 5.20717 5.22825 5.25285 5.43767 5.49127 5.74543 5.98448 6.01715 6.12101 6.28316 6.35263 6.69844 6.76274 6.83842 7.06663 7.34294 7.41436 7.53355 7.71188 8.01509 8.19628 8.50816 8.82410 9.03506 9.50790 10.98164 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.038463 B = 0.005817 C = 0.005651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.804846 B = 4812.199682 C = 4953.527168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.258 3.742 3 H 0.063 0.937 4 C -0.527 4.527 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.593 5.593 13 C 0.081 3.919 14 C 0.504 3.496 15 O -0.542 6.542 16 C -0.064 4.064 17 C 0.019 3.981 18 C -0.204 4.204 19 C -0.212 4.212 20 C -0.048 4.048 21 O -0.173 6.173 22 H 0.011 0.989 23 H 0.030 0.970 24 H 0.093 0.907 25 H 0.264 0.736 26 H 0.044 0.956 27 H 0.054 0.946 28 H 0.082 0.918 29 H 0.118 0.882 30 H 0.104 0.896 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.334 -4.678 -12.846 14.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.158 3.842 3 H 0.081 0.919 4 C -0.566 4.566 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.324 5.324 13 C -0.063 4.063 14 C 0.289 3.711 15 O -0.420 6.420 16 C -0.104 4.104 17 C -0.032 4.032 18 C -0.223 4.223 19 C -0.231 4.231 20 C -0.115 4.115 21 O -0.069 6.069 22 H 0.030 0.970 23 H 0.049 0.951 24 H 0.112 0.888 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.101 0.899 29 H 0.136 0.864 30 H 0.122 0.878 31 H 0.163 0.837 32 H 0.163 0.837 33 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 4.074 -3.925 -12.650 13.857 hybrid contribution 0.542 -0.479 0.916 1.167 sum 4.616 -4.404 -11.734 13.356 Atomic orbital electron populations 1.22080 0.98146 0.99405 1.00807 1.18951 0.90903 0.94562 0.79825 0.91916 1.21275 1.31944 1.13059 0.90295 0.92260 1.24898 0.94928 0.94977 0.98975 1.69869 1.36263 1.22529 1.23889 0.86544 0.79230 0.79543 0.81984 1.20257 1.21165 1.20215 1.48227 1.48985 1.11682 1.23527 1.21644 0.98857 0.83227 1.02562 1.20127 0.79684 0.87264 0.83991 1.90689 1.57905 1.16961 1.76459 1.20240 1.00018 0.96151 0.93972 1.21682 0.93249 0.96037 0.92192 1.21493 0.94936 1.03058 1.02800 1.21752 0.99641 1.01950 0.99800 1.23902 0.85205 1.00117 1.02319 1.83980 1.37022 1.43842 1.42098 0.97017 0.95127 0.88850 0.92604 0.93728 0.92760 0.89919 0.86437 0.87766 0.83705 0.83736 0.78413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 8.97 37.16 0.33 -3.19 16 2 C 0.26 6.63 2.64 -69.08 -0.18 6.45 16 3 H 0.06 1.89 6.90 -51.93 -0.36 1.53 16 4 C -0.53 -14.20 7.99 -34.44 -0.28 -14.48 16 5 H 0.06 1.55 7.33 -52.49 -0.38 1.17 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.24 11.32 55.43 0.63 -24.61 16 8 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 N -0.59 -12.58 2.75 -175.26 -0.48 -13.06 16 13 C 0.08 1.30 9.24 59.85 0.55 1.85 16 14 C 0.50 10.56 7.67 -10.99 -0.08 10.47 16 15 O -0.54 -13.94 15.36 5.56 0.09 -13.85 16 16 C -0.06 -0.97 4.79 -29.03 -0.14 -1.11 16 17 C 0.02 0.31 5.81 -35.63 -0.21 0.11 16 18 C -0.20 -3.16 10.81 -39.71 -0.43 -3.58 16 19 C -0.21 -2.89 10.91 -39.70 -0.43 -3.32 16 20 C -0.05 -0.63 12.09 29.41 0.36 -0.28 16 21 O -0.17 -2.84 10.65 5.70 0.06 -2.78 16 22 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 23 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 24 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 25 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.67 6.44 -51.93 -0.33 0.34 16 28 H 0.08 1.42 7.02 -51.93 -0.36 1.06 16 29 H 0.12 1.43 7.40 -51.93 -0.38 1.05 16 30 H 0.10 1.31 8.11 -51.93 -0.42 0.89 16 31 H 0.15 2.03 8.06 -52.48 -0.42 1.61 16 32 H 0.14 1.56 8.06 -52.48 -0.42 1.14 16 33 H 0.20 1.75 8.06 -52.49 -0.42 1.32 16 LS Contribution 282.86 15.07 4.26 4.26 Total: -1.00 -33.01 282.86 -5.28 -38.29 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -4.21 Total: 1.20 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: -0.60 Total: -5.40 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.15 Total: -37.67 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: 0.15 Total: -16.63 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -33.01 -5.28 -38.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259736256.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.317 kcal (2) G-P(sol) polarization free energy of solvation -33.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds