Wall clock time and date at job start Thu Apr 9 2020 12:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35361 * 126.39007 * 2 1 4 4 C 1.41507 * 105.50305 * 180.08385 * 3 2 1 5 5 C 1.47712 * 126.51626 * 179.90065 * 4 3 2 6 6 O 1.21571 * 119.99947 * 359.71609 * 5 4 3 7 7 N 1.34768 * 119.99934 * 179.71323 * 5 4 3 8 8 C 1.46500 * 120.00056 * 179.97438 * 7 5 4 9 9 H 1.08998 * 109.46845 * 35.00845 * 8 7 5 10 10 C 1.52997 * 109.47473 * 275.00296 * 8 7 5 11 11 C 1.50706 * 109.47187 * 154.99900 * 8 7 5 12 12 H 1.07998 * 119.99629 * 0.02562 * 11 8 7 13 13 C 1.37875 * 119.99955 * 179.97438 * 11 8 7 14 14 N 1.31510 * 120.00308 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 119.99908 * 180.02562 * 13 11 8 16 16 H 1.48500 * 109.47233 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46997 * 120.00173 * 15 13 11 18 18 H 1.48501 * 109.47364 * 240.00497 * 15 13 11 19 19 N 1.31804 * 106.96272 * 359.64203 * 4 3 2 20 20 N 1.28464 * 110.07492 * 0.22427 * 19 4 3 21 21 C 1.46498 * 124.88557 * 180.02562 * 20 19 4 22 22 H 1.08993 * 109.47166 * 270.32329 * 1 2 3 23 23 H 1.09003 * 109.46747 * 30.31982 * 1 2 3 24 24 H 1.09000 * 109.47182 * 150.31512 * 1 2 3 25 25 H 1.07995 * 127.24460 * 359.97389 * 3 2 1 26 26 H 0.97001 * 120.00396 * 0.02562 * 7 5 4 27 27 H 1.09002 * 109.47153 * 59.99757 * 10 8 7 28 28 H 1.09001 * 109.46832 * 299.99948 * 10 8 7 29 29 H 1.09004 * 109.47261 * 179.97438 * 10 8 7 30 30 H 0.96998 * 120.00365 * 179.97438 * 14 13 11 31 31 H 1.09000 * 109.47201 * 90.02298 * 21 20 19 32 32 H 1.08998 * 109.47512 * 210.02627 * 21 20 19 33 33 H 1.09005 * 109.47303 * 330.02605 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3101 1.0897 0.0000 4 6 3.6322 0.5851 -0.0020 5 6 4.8766 1.3809 -0.0048 6 8 4.8215 2.5953 -0.0109 7 7 6.0731 0.7606 -0.0007 8 6 7.3073 1.5498 -0.0040 9 1 7.1595 2.4578 0.5806 10 6 7.6703 1.9229 -1.4428 11 6 8.4238 0.7388 0.6016 12 1 8.2332 -0.2643 0.9534 13 6 9.6889 1.2771 0.7056 14 7 9.9212 2.4984 0.2767 15 14 11.0730 0.2715 1.4556 16 1 10.5555 -1.0614 1.8564 17 1 12.1583 0.1007 0.4565 18 1 11.6057 0.9757 2.6496 19 7 3.5420 -0.7298 0.0048 20 7 2.3080 -1.0872 0.0061 21 6 1.8375 -2.4745 0.0137 22 1 -0.3633 0.0058 1.0276 23 1 -0.3633 0.8871 -0.5188 24 1 -0.3633 -0.8928 -0.5089 25 1 2.0058 2.1258 -0.0004 26 1 6.1171 -0.2084 0.0038 27 1 6.8627 2.5095 -1.8808 28 1 7.8181 1.0148 -2.0273 29 1 8.5884 2.5105 -1.4452 30 1 10.8111 2.8772 0.3502 31 1 1.7198 -2.8126 1.0432 32 1 0.8786 -2.5358 -0.5008 33 1 2.5642 -3.1074 -0.4957 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259752022.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:05:36 Heat of formation + Delta-G solvation = 34.488399 kcal Electronic energy + Delta-G solvation = -16436.673753 eV Core-core repulsion = 13692.145071 eV Total energy + Delta-G solvation = -2744.528683 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 3.11 seconds Orbital eigenvalues (eV) -42.47797 -38.44209 -34.69885 -33.47528 -32.65028 -32.16295 -29.03894 -27.40254 -26.69546 -25.17446 -23.06893 -20.88900 -20.29380 -18.92530 -17.19289 -16.50060 -16.30441 -15.49918 -15.08316 -14.24428 -14.07247 -13.85672 -13.43288 -13.31018 -12.90118 -12.69448 -12.58607 -12.30742 -12.20369 -11.60552 -11.03530 -10.90179 -10.68173 -10.57998 -10.24404 -10.16235 -9.17543 -8.96586 -8.88421 -8.77483 -8.48141 -7.79055 -6.05271 -4.13633 1.91330 2.36143 2.55423 3.28945 3.36274 3.40045 4.13549 4.16241 4.39519 4.48610 4.64352 4.84373 4.92955 5.15591 5.21731 5.27209 5.31139 5.60088 5.75826 5.89194 6.06793 6.63124 6.88150 6.92811 7.06625 7.23569 7.54047 7.65801 7.77971 7.98313 8.13541 8.22357 8.79330 8.87259 9.21883 9.53579 11.00984 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.040888 B = 0.005380 C = 0.004930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.635553 B = 5203.327876 C = 5678.424071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.002 4.002 3 C -0.182 4.182 4 C 0.000 4.000 5 C 0.586 3.414 6 O -0.549 6.549 7 N -0.693 5.693 8 C 0.262 3.738 9 H 0.051 0.949 10 C -0.147 4.147 11 C -0.530 4.530 12 H 0.062 0.938 13 C 0.065 3.935 14 N -0.884 5.884 15 Si 0.902 3.098 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.283 1.283 19 N -0.265 5.265 20 N -0.290 5.290 21 C 0.088 3.912 22 H 0.075 0.925 23 H 0.084 0.916 24 H 0.066 0.934 25 H 0.159 0.841 26 H 0.395 0.605 27 H 0.016 0.984 28 H 0.026 0.974 29 H 0.091 0.909 30 H 0.263 0.737 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.516 -9.212 -1.101 19.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.125 4.125 3 C -0.210 4.210 4 C -0.161 4.161 5 C 0.369 3.631 6 O -0.426 6.426 7 N -0.340 5.340 8 C 0.161 3.839 9 H 0.068 0.932 10 C -0.205 4.205 11 C -0.569 4.569 12 H 0.080 0.920 13 C -0.137 4.137 14 N -0.522 5.522 15 Si 0.729 3.271 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.209 1.209 19 N -0.100 5.100 20 N -0.079 5.079 21 C -0.053 4.053 22 H 0.094 0.906 23 H 0.102 0.898 24 H 0.085 0.915 25 H 0.177 0.823 26 H 0.228 0.772 27 H 0.035 0.965 28 H 0.046 0.954 29 H 0.109 0.891 30 H 0.073 0.927 31 H 0.100 0.900 32 H 0.109 0.891 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.740 -9.302 -1.114 19.183 hybrid contribution 0.322 -0.388 0.380 0.632 sum -16.418 -9.690 -0.734 19.078 Atomic orbital electron populations 1.20294 0.86985 1.03487 1.02975 1.21336 0.95171 0.86969 1.09064 1.21535 0.90844 0.99407 1.09238 1.22388 0.95918 0.89471 1.08286 1.16960 0.81919 0.86479 0.77758 1.90737 1.86796 1.12931 1.52121 1.46424 1.06101 1.10709 1.70763 1.18813 0.78956 0.92049 0.94121 0.93160 1.22077 1.01663 0.99523 0.97282 1.21269 0.93705 1.01043 1.40845 0.91974 1.24881 0.98547 0.95063 0.95243 1.69915 1.21987 1.14279 1.46022 0.86387 0.81714 0.80117 0.78841 1.19750 1.20909 1.20901 1.73586 1.01200 1.15361 1.19857 1.45294 1.03014 1.07196 1.52370 1.22074 1.01280 0.77778 1.04140 0.90609 0.89757 0.91498 0.82294 0.77214 0.96539 0.95437 0.89068 0.92688 0.89986 0.89058 0.88600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.10 36.01 0.36 -0.22 16 2 C 0.00 -0.02 6.92 -82.21 -0.57 -0.59 16 3 C -0.18 -2.94 10.73 -39.36 -0.42 -3.36 16 4 C 0.00 0.01 7.13 -82.76 -0.59 -0.58 16 5 C 0.59 13.60 7.79 -12.39 -0.10 13.50 16 6 O -0.55 -14.34 16.59 5.30 0.09 -14.25 16 7 N -0.69 -16.38 5.07 -55.92 -0.28 -16.66 16 8 C 0.26 7.10 2.56 -69.08 -0.18 6.93 16 9 H 0.05 1.54 7.58 -51.93 -0.39 1.15 16 10 C -0.15 -3.85 9.26 37.16 0.34 -3.51 16 11 C -0.53 -14.74 8.73 -34.44 -0.30 -15.04 16 12 H 0.06 1.67 7.74 -52.49 -0.41 1.27 16 13 C 0.07 1.82 5.30 -17.82 -0.09 1.72 16 14 N -0.88 -25.56 11.32 55.43 0.63 -24.93 16 15 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 16 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 N -0.27 -4.56 11.67 33.42 0.39 -4.17 16 20 N -0.29 -3.81 3.70 -63.85 -0.24 -4.05 16 21 C 0.09 0.66 11.11 59.85 0.66 1.32 16 22 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.07 0.35 7.00 -51.93 -0.36 -0.01 16 25 H 0.16 2.39 8.06 -52.49 -0.42 1.97 16 26 H 0.39 8.60 8.27 -40.82 -0.34 8.26 16 27 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.09 2.55 6.07 -51.93 -0.32 2.23 16 30 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.41 6.95 -51.93 -0.36 0.04 16 33 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 287.64 15.07 4.33 4.33 Total: -1.00 -33.96 287.64 -5.25 -39.21 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -4.27 Total: 4.14 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -0.88 Total: 0.17 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: 0.50 Total: -49.82 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: 0.09 Total: -14.25 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -33.96 -5.25 -39.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259752022.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.694 kcal (2) G-P(sol) polarization free energy of solvation -33.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.11 seconds