Wall clock time and date at job start Thu Apr 9 2020 12:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35361 * 126.39007 * 2 1 4 4 C 1.41507 * 105.50305 * 180.08385 * 3 2 1 5 5 C 1.47712 * 126.51626 * 179.90065 * 4 3 2 6 6 O 1.21571 * 119.99947 * 359.71609 * 5 4 3 7 7 N 1.34768 * 119.99934 * 179.71323 * 5 4 3 8 8 C 1.46500 * 120.00056 * 179.97438 * 7 5 4 9 9 H 1.08998 * 109.46845 * 35.00845 * 8 7 5 10 10 C 1.52997 * 109.47473 * 275.00296 * 8 7 5 11 11 C 1.50706 * 109.47187 * 154.99900 * 8 7 5 12 12 H 1.07998 * 119.99629 * 0.02562 * 11 8 7 13 13 C 1.37875 * 119.99955 * 179.97438 * 11 8 7 14 14 N 1.31510 * 120.00308 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 119.99908 * 180.02562 * 13 11 8 16 16 H 1.48500 * 109.47233 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46997 * 120.00173 * 15 13 11 18 18 H 1.48501 * 109.47364 * 240.00497 * 15 13 11 19 19 N 1.31804 * 106.96272 * 359.64203 * 4 3 2 20 20 N 1.28464 * 110.07492 * 0.22427 * 19 4 3 21 21 C 1.46498 * 124.88557 * 180.02562 * 20 19 4 22 22 H 1.08993 * 109.47166 * 270.32329 * 1 2 3 23 23 H 1.09003 * 109.46747 * 30.31982 * 1 2 3 24 24 H 1.09000 * 109.47182 * 150.31512 * 1 2 3 25 25 H 1.07995 * 127.24460 * 359.97389 * 3 2 1 26 26 H 0.97001 * 120.00396 * 0.02562 * 7 5 4 27 27 H 1.09002 * 109.47153 * 59.99757 * 10 8 7 28 28 H 1.09001 * 109.46832 * 299.99948 * 10 8 7 29 29 H 1.09004 * 109.47261 * 179.97438 * 10 8 7 30 30 H 0.96998 * 120.00365 * 179.97438 * 14 13 11 31 31 H 1.09000 * 109.47201 * 90.02298 * 21 20 19 32 32 H 1.08998 * 109.47512 * 210.02627 * 21 20 19 33 33 H 1.09005 * 109.47303 * 330.02605 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3101 1.0897 0.0000 4 6 3.6322 0.5851 -0.0020 5 6 4.8766 1.3809 -0.0048 6 8 4.8215 2.5953 -0.0109 7 7 6.0731 0.7606 -0.0007 8 6 7.3073 1.5498 -0.0040 9 1 7.1595 2.4578 0.5806 10 6 7.6703 1.9229 -1.4428 11 6 8.4238 0.7388 0.6016 12 1 8.2332 -0.2643 0.9534 13 6 9.6889 1.2771 0.7056 14 7 9.9212 2.4984 0.2767 15 14 11.0730 0.2715 1.4556 16 1 10.5555 -1.0614 1.8564 17 1 12.1583 0.1007 0.4565 18 1 11.6057 0.9757 2.6496 19 7 3.5420 -0.7298 0.0048 20 7 2.3080 -1.0872 0.0061 21 6 1.8375 -2.4745 0.0137 22 1 -0.3633 0.0058 1.0276 23 1 -0.3633 0.8871 -0.5188 24 1 -0.3633 -0.8928 -0.5089 25 1 2.0058 2.1258 -0.0004 26 1 6.1171 -0.2084 0.0038 27 1 6.8627 2.5095 -1.8808 28 1 7.8181 1.0148 -2.0273 29 1 8.5884 2.5105 -1.4452 30 1 10.8111 2.8772 0.3502 31 1 1.7198 -2.8126 1.0432 32 1 0.8786 -2.5358 -0.5008 33 1 2.5642 -3.1074 -0.4957 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259752022.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:05:31 Heat of formation + Delta-G solvation = 9.422097 kcal Electronic energy + Delta-G solvation = -16437.760710 eV Core-core repulsion = 13692.145071 eV Total energy + Delta-G solvation = -2745.615639 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.63768 -40.32394 -36.75670 -34.67397 -34.17222 -33.51838 -31.01168 -28.37617 -27.70742 -27.34628 -24.58262 -22.45964 -21.83892 -20.64963 -18.78317 -17.84603 -17.35709 -17.24603 -17.05914 -16.04494 -15.67585 -15.05481 -14.88110 -14.42536 -14.06643 -13.93382 -13.76091 -13.43729 -13.32845 -13.04486 -12.90909 -12.88178 -12.76090 -12.30390 -12.13832 -11.81747 -11.14110 -11.05910 -10.62242 -10.14868 -9.88034 -9.74040 -8.18656 -6.36498 0.57858 1.14948 1.44186 1.44493 1.57556 1.63243 2.34250 2.46319 2.59099 3.11334 3.41002 3.78739 4.05813 4.26780 4.38870 4.57775 4.62868 4.70019 4.74131 4.83333 4.90134 5.05245 5.06116 5.12092 5.34085 5.40843 5.56731 5.65097 5.85656 5.96491 6.06084 6.68846 6.75532 7.03154 7.27669 7.44218 8.88426 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.040888 B = 0.005380 C = 0.004930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.635553 B = 5203.327876 C = 5678.424071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.024 3.976 3 C -0.211 4.211 4 C -0.040 4.040 5 C 0.584 3.416 6 O -0.590 6.590 7 N -0.691 5.691 8 C 0.267 3.733 9 H 0.003 0.997 10 C -0.132 4.132 11 C -0.549 4.549 12 H 0.069 0.931 13 C 0.016 3.984 14 N -0.916 5.916 15 Si 0.977 3.023 16 H -0.263 1.263 17 H -0.275 1.275 18 H -0.280 1.280 19 N -0.280 5.280 20 N -0.278 5.278 21 C 0.072 3.928 22 H 0.094 0.906 23 H 0.093 0.907 24 H 0.099 0.901 25 H 0.158 0.842 26 H 0.404 0.596 27 H 0.012 0.988 28 H 0.039 0.961 29 H 0.072 0.928 30 H 0.267 0.733 31 H 0.102 0.898 32 H 0.132 0.868 33 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.363 -12.003 -0.872 22.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.101 4.101 3 C -0.240 4.240 4 C -0.198 4.198 5 C 0.369 3.631 6 O -0.470 6.470 7 N -0.339 5.339 8 C 0.165 3.835 9 H 0.021 0.979 10 C -0.191 4.191 11 C -0.587 4.587 12 H 0.087 0.913 13 C -0.184 4.184 14 N -0.554 5.554 15 Si 0.801 3.199 16 H -0.187 1.187 17 H -0.201 1.201 18 H -0.206 1.206 19 N -0.117 5.117 20 N -0.068 5.068 21 C -0.066 4.066 22 H 0.113 0.887 23 H 0.112 0.888 24 H 0.117 0.883 25 H 0.176 0.824 26 H 0.239 0.761 27 H 0.032 0.968 28 H 0.058 0.942 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.120 0.880 32 H 0.150 0.850 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -18.608 -12.133 -0.890 22.232 hybrid contribution 0.742 0.413 0.309 0.904 sum -17.866 -11.720 -0.581 21.375 Atomic orbital electron populations 1.20539 0.82610 1.05616 1.04775 1.22008 0.97337 0.85390 1.05350 1.21723 0.90206 1.00823 1.11213 1.21820 0.95033 0.90546 1.12410 1.17491 0.82939 0.86400 0.76247 1.90687 1.87625 1.14902 1.53827 1.46207 1.05557 1.10847 1.71301 1.18488 0.80490 0.90860 0.93707 0.97882 1.21896 1.00520 0.99593 0.97119 1.21516 0.94234 1.01398 1.41536 0.91306 1.25816 1.01119 0.96128 0.95376 1.70051 1.22824 1.15902 1.46644 0.85226 0.78112 0.78657 0.77891 1.18683 1.20055 1.20620 1.73481 1.03713 1.14143 1.20380 1.45891 1.01866 1.09472 1.49533 1.22653 1.03107 0.74612 1.06208 0.88745 0.88808 0.88252 0.82399 0.76113 0.96840 0.94215 0.90903 0.92357 0.87968 0.85032 0.88232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 10.10 71.24 0.72 -0.06 16 2 C 0.02 0.55 6.92 41.40 0.29 0.84 16 3 C -0.21 -6.80 10.73 22.41 0.24 -6.56 16 4 C -0.04 -1.57 7.13 42.46 0.30 -1.27 16 5 C 0.58 28.48 7.79 86.75 0.68 29.16 16 6 O -0.59 -32.86 16.59 -3.94 -0.07 -32.92 16 7 N -0.69 -34.09 5.07 -449.11 -2.28 -36.36 16 8 C 0.27 15.17 2.56 44.25 0.11 15.28 16 9 H 0.00 0.21 7.58 -2.39 -0.02 0.20 16 10 C -0.13 -7.23 9.26 71.98 0.67 -6.56 16 11 C -0.55 -31.10 8.73 25.60 0.22 -30.88 16 12 H 0.07 3.72 7.74 -2.91 -0.02 3.70 16 13 C 0.02 0.88 5.30 84.65 0.45 1.33 16 14 N -0.92 -54.16 11.32 21.45 0.24 -53.91 16 15 Si 0.98 43.57 29.54 68.60 2.03 45.60 16 16 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 17 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 18 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 19 N -0.28 -9.44 11.67 -48.17 -0.56 -10.01 16 20 N -0.28 -6.56 3.70 -355.92 -1.32 -7.88 16 21 C 0.07 0.77 11.11 127.77 1.42 2.19 16 22 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 23 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.10 0.42 7.00 -2.39 -0.02 0.41 16 25 H 0.16 4.89 8.06 -2.91 -0.02 4.87 16 26 H 0.40 18.11 8.27 -92.71 -0.77 17.34 16 27 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.07 4.23 6.07 -2.38 -0.01 4.22 16 30 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 31 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.13 0.38 6.95 -2.39 -0.02 0.36 16 33 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 Total: -1.00 -77.76 287.64 3.50 -74.26 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 0.36 Total: 17.78 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: 5.10 Total: 3.45 kcal Atomic # 7 Polarization: -104.25 SS G_CDS: -3.91 Total: -108.16 kcal Atomic # 8 Polarization: -32.86 SS G_CDS: -0.07 Total: -32.92 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -77.76 3.50 -74.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259752022.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.681 kcal (2) G-P(sol) polarization free energy of solvation -77.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds