Wall clock time and date at job start Thu Apr 9 2020 12:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39866 * 125.89972 * 2 1 4 4 C 1.35320 * 107.91898 * 180.02562 * 3 2 1 5 5 C 1.50702 * 126.12563 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47317 * 84.99587 * 5 4 3 7 7 O 1.21285 * 120.00018 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00110 * 179.97438 * 6 5 4 9 9 C 1.46496 * 119.99885 * 179.97438 * 8 6 5 10 10 H 1.08997 * 109.47501 * 325.00609 * 9 8 6 11 11 C 1.53000 * 109.47012 * 85.00709 * 9 8 6 12 12 C 1.50701 * 109.46817 * 205.00385 * 9 8 6 13 13 H 1.07996 * 120.00401 * 0.02562 * 12 9 8 14 14 C 1.37879 * 119.99945 * 179.97438 * 12 9 8 15 15 N 1.31518 * 120.00023 * 0.02562 * 14 12 9 16 16 Si 1.86804 * 120.00091 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.47033 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.46951 * 120.00562 * 16 14 12 19 19 H 1.48504 * 109.47075 * 240.00481 * 16 14 12 20 20 N 1.34951 * 107.74569 * 359.97438 * 4 3 2 21 21 H 0.96996 * 126.03426 * 179.97438 * 20 4 3 22 22 N 1.30844 * 125.89419 * 180.02562 * 2 1 3 23 23 H 1.09001 * 109.47171 * 269.98359 * 1 2 3 24 24 H 1.09000 * 109.47391 * 29.97920 * 1 2 3 25 25 H 1.09000 * 109.47782 * 149.98464 * 1 2 3 26 26 H 1.07993 * 126.04141 * 0.05720 * 3 2 1 27 27 H 1.09000 * 109.46850 * 204.99880 * 5 4 3 28 28 H 1.08991 * 109.46904 * 324.99271 * 5 4 3 29 29 H 0.97001 * 119.99359 * 0.02562 * 8 6 5 30 30 H 1.08995 * 109.47195 * 300.00224 * 11 9 8 31 31 H 1.09003 * 109.46964 * 60.00062 * 11 9 8 32 32 H 1.09002 * 109.47208 * 179.97438 * 11 9 8 33 33 H 0.97000 * 119.99978 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7152 -0.0006 5 6 4.8351 1.5988 -0.0002 6 6 5.1697 1.9927 1.4153 7 8 4.4846 1.5948 2.3336 8 7 6.2309 2.7864 1.6610 9 6 6.5559 3.1698 3.0370 10 1 5.6349 3.2955 3.6064 11 6 7.4096 2.0767 3.6829 12 6 7.3226 4.4672 3.0292 13 1 7.5452 4.9573 2.0930 14 6 7.7391 5.0290 4.2175 15 7 7.4676 4.4325 5.3577 16 14 8.6889 6.6375 4.2079 17 1 8.8628 7.1013 2.8079 18 1 7.9374 7.6607 4.9782 19 1 10.0212 6.4294 4.8299 20 7 3.6087 -0.6343 -0.0004 21 1 4.3907 -1.2081 -0.0010 22 7 2.2741 -1.0600 -0.0005 23 1 -0.3633 -0.0003 1.0277 24 1 -0.3634 0.8902 -0.5135 25 1 -0.3635 -0.8898 -0.5140 26 1 1.9923 2.1597 0.0009 27 1 5.6753 1.0575 -0.4351 28 1 4.6357 2.4940 -0.5891 29 1 6.7790 3.1043 0.9265 30 1 6.8551 1.1384 3.6885 31 1 8.3306 1.9511 3.1136 32 1 7.6518 2.3622 4.7067 33 1 7.7609 4.8275 6.1937 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260061741.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:03 Heat of formation + Delta-G solvation = 20.858599 kcal Electronic energy + Delta-G solvation = -16302.828444 eV Core-core repulsion = 13557.708728 eV Total energy + Delta-G solvation = -2745.119715 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -41.13543 -38.78454 -34.88160 -33.21207 -32.44102 -31.51980 -29.15526 -27.85719 -27.01597 -25.28695 -21.72755 -20.34391 -19.76669 -19.46242 -17.51317 -16.96518 -15.82390 -15.26123 -14.68943 -14.61312 -14.19097 -13.64107 -13.31070 -13.08038 -12.92309 -12.58974 -12.46196 -12.20589 -11.79281 -11.64147 -11.11327 -10.97633 -10.77580 -10.45436 -10.33714 -10.27741 -9.31575 -9.08692 -8.99620 -8.59325 -8.41267 -7.97267 -6.15618 -4.25286 1.98743 2.88326 2.99574 3.21432 3.28700 3.30213 3.32193 4.09557 4.36299 4.62141 4.82674 5.07011 5.16927 5.33592 5.44916 5.58364 5.63328 5.73810 5.88002 5.97507 6.30848 6.77384 6.81375 6.90929 7.10506 7.39167 7.40985 7.51490 7.65380 7.82897 7.87031 8.10967 8.59732 8.73990 9.05969 9.42492 10.90409 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.051314 B = 0.004669 C = 0.004627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.526330 B = 5995.751479 C = 6050.565425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.073 3.927 3 C -0.258 4.258 4 C 0.121 3.879 5 C -0.086 4.086 6 C 0.501 3.499 7 O -0.543 6.543 8 N -0.708 5.708 9 C 0.264 3.736 10 H 0.049 0.951 11 C -0.147 4.147 12 C -0.534 4.534 13 H 0.062 0.938 14 C 0.066 3.934 15 N -0.883 5.883 16 Si 0.902 3.098 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.283 1.283 20 N -0.471 5.471 21 H 0.435 0.565 22 N -0.300 5.300 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.145 0.855 27 H 0.099 0.901 28 H 0.116 0.884 29 H 0.389 0.611 30 H 0.013 0.987 31 H 0.026 0.974 32 H 0.090 0.910 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.881 -5.156 -12.181 14.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.093 4.093 3 C -0.287 4.287 4 C -0.008 4.008 5 C -0.129 4.129 6 C 0.284 3.716 7 O -0.421 6.421 8 N -0.356 5.356 9 C 0.162 3.838 10 H 0.067 0.933 11 C -0.205 4.205 12 C -0.573 4.573 13 H 0.080 0.920 14 C -0.137 4.137 15 N -0.521 5.521 16 Si 0.730 3.270 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.209 1.209 20 N -0.178 5.178 21 H 0.278 0.722 22 N -0.124 5.124 23 H 0.095 0.905 24 H 0.095 0.905 25 H 0.088 0.912 26 H 0.162 0.838 27 H 0.118 0.882 28 H 0.134 0.866 29 H 0.222 0.778 30 H 0.032 0.968 31 H 0.045 0.955 32 H 0.109 0.891 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.327 -6.661 -11.285 14.551 hybrid contribution 1.383 1.632 -0.204 2.149 sum -4.944 -5.029 -11.489 13.481 Atomic orbital electron populations 1.20151 0.86921 1.02920 1.02975 1.22247 0.96876 0.90781 0.99386 1.21037 0.90902 0.99797 1.16942 1.20367 0.96223 0.84548 0.99682 1.20400 0.94727 0.99829 0.97900 1.20132 0.81712 0.80080 0.89652 1.90718 1.50622 1.54802 1.45937 1.46510 1.28243 1.48784 1.12071 1.18760 0.95934 0.92649 0.76428 0.93333 1.22077 0.97967 0.96472 1.04016 1.21248 1.36562 1.06159 0.93288 0.91958 1.24902 0.95821 0.97749 0.95272 1.69915 1.45673 1.38851 0.97614 0.86385 0.79487 0.82997 0.78176 1.19709 1.20843 1.20876 1.46130 1.07161 1.04802 1.59755 0.72156 1.77192 0.86490 1.22510 1.26202 0.90544 0.90523 0.91200 0.83754 0.88235 0.86553 0.77837 0.96779 0.95475 0.89120 0.92589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.74 10.45 36.00 0.38 -0.37 16 2 C 0.07 1.08 7.22 -82.41 -0.59 0.48 16 3 C -0.26 -3.88 10.65 -40.01 -0.43 -4.31 16 4 C 0.12 1.80 5.70 -82.26 -0.47 1.33 16 5 C -0.09 -1.12 6.25 -29.04 -0.18 -1.31 16 6 C 0.50 9.47 7.79 -10.99 -0.09 9.38 16 7 O -0.54 -12.92 15.70 5.55 0.09 -12.83 16 8 N -0.71 -13.97 5.07 -54.93 -0.28 -14.25 16 9 C 0.26 6.60 2.56 -69.08 -0.18 6.42 16 10 H 0.05 1.42 7.58 -51.93 -0.39 1.02 16 11 C -0.15 -3.61 9.26 37.16 0.34 -3.27 16 12 C -0.53 -13.88 8.73 -34.44 -0.30 -14.19 16 13 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 14 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 15 N -0.88 -24.73 11.32 55.43 0.63 -24.10 16 16 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 17 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 N -0.47 -6.82 7.36 33.48 0.25 -6.57 16 21 H 0.43 5.05 8.96 -182.61 -1.64 3.41 16 22 N -0.30 -4.76 12.70 33.67 0.43 -4.33 16 23 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.14 1.95 8.06 -52.49 -0.42 1.53 16 27 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.39 6.41 8.54 -40.82 -0.35 6.06 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 33 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 289.15 15.07 4.36 4.36 Total: -1.00 -33.12 289.15 -6.78 -39.90 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -5.62 Total: 6.67 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -1.61 Total: -4.16 kcal Atomic # 7 Polarization: -50.27 SS G_CDS: 1.02 Total: -49.25 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.09 Total: -12.83 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -33.12 -6.78 -39.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260061741.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.762 kcal (2) G-P(sol) polarization free energy of solvation -33.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds