Wall clock time and date at job start Thu Apr 9 2020 12:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39866 * 125.89972 * 2 1 4 4 C 1.35320 * 107.91898 * 180.02562 * 3 2 1 5 5 C 1.50702 * 126.12563 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47317 * 84.99587 * 5 4 3 7 7 O 1.21285 * 120.00018 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00110 * 179.97438 * 6 5 4 9 9 C 1.46496 * 119.99885 * 179.97438 * 8 6 5 10 10 H 1.08997 * 109.47501 * 325.00609 * 9 8 6 11 11 C 1.53000 * 109.47012 * 85.00709 * 9 8 6 12 12 C 1.50701 * 109.46817 * 205.00385 * 9 8 6 13 13 H 1.07996 * 120.00401 * 0.02562 * 12 9 8 14 14 C 1.37879 * 119.99945 * 179.97438 * 12 9 8 15 15 N 1.31518 * 120.00023 * 0.02562 * 14 12 9 16 16 Si 1.86804 * 120.00091 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.47033 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.46951 * 120.00562 * 16 14 12 19 19 H 1.48504 * 109.47075 * 240.00481 * 16 14 12 20 20 N 1.34951 * 107.74569 * 359.97438 * 4 3 2 21 21 H 0.96996 * 126.03426 * 179.97438 * 20 4 3 22 22 N 1.30844 * 125.89419 * 180.02562 * 2 1 3 23 23 H 1.09001 * 109.47171 * 269.98359 * 1 2 3 24 24 H 1.09000 * 109.47391 * 29.97920 * 1 2 3 25 25 H 1.09000 * 109.47782 * 149.98464 * 1 2 3 26 26 H 1.07993 * 126.04141 * 0.05720 * 3 2 1 27 27 H 1.09000 * 109.46850 * 204.99880 * 5 4 3 28 28 H 1.08991 * 109.46904 * 324.99271 * 5 4 3 29 29 H 0.97001 * 119.99359 * 0.02562 * 8 6 5 30 30 H 1.08995 * 109.47195 * 300.00224 * 11 9 8 31 31 H 1.09003 * 109.46964 * 60.00062 * 11 9 8 32 32 H 1.09002 * 109.47208 * 179.97438 * 11 9 8 33 33 H 0.97000 * 119.99978 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7152 -0.0006 5 6 4.8351 1.5988 -0.0002 6 6 5.1697 1.9927 1.4153 7 8 4.4846 1.5948 2.3336 8 7 6.2309 2.7864 1.6610 9 6 6.5559 3.1698 3.0370 10 1 5.6349 3.2955 3.6064 11 6 7.4096 2.0767 3.6829 12 6 7.3226 4.4672 3.0292 13 1 7.5452 4.9573 2.0930 14 6 7.7391 5.0290 4.2175 15 7 7.4676 4.4325 5.3577 16 14 8.6889 6.6375 4.2079 17 1 8.8628 7.1013 2.8079 18 1 7.9374 7.6607 4.9782 19 1 10.0212 6.4294 4.8299 20 7 3.6087 -0.6343 -0.0004 21 1 4.3907 -1.2081 -0.0010 22 7 2.2741 -1.0600 -0.0005 23 1 -0.3633 -0.0003 1.0277 24 1 -0.3634 0.8902 -0.5135 25 1 -0.3635 -0.8898 -0.5140 26 1 1.9923 2.1597 0.0009 27 1 5.6753 1.0575 -0.4351 28 1 4.6357 2.4940 -0.5891 29 1 6.7790 3.1043 0.9265 30 1 6.8551 1.1384 3.6885 31 1 8.3306 1.9511 3.1136 32 1 7.6518 2.3622 4.7067 33 1 7.7609 4.8275 6.1937 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260061741.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:03 Heat of formation + Delta-G solvation = -3.646828 kcal Electronic energy + Delta-G solvation = -16303.891079 eV Core-core repulsion = 13557.708728 eV Total energy + Delta-G solvation = -2746.182350 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.24906 -40.37567 -36.73403 -34.41844 -34.19712 -32.71930 -30.89617 -28.84670 -28.26777 -27.32750 -23.42288 -21.70582 -21.06134 -20.81700 -19.08212 -18.25172 -17.53139 -17.08557 -16.18205 -15.93549 -15.61348 -14.87124 -14.64433 -14.47066 -14.34032 -13.92832 -13.67265 -13.51253 -13.17738 -13.02544 -12.85333 -12.70293 -12.67913 -12.27666 -12.10178 -11.54541 -11.08845 -10.85203 -10.59632 -10.19325 -9.74496 -9.55371 -8.16996 -6.34566 0.84971 1.45635 1.46999 1.58767 1.77055 1.81461 1.97985 2.38481 2.74455 3.14110 3.52793 3.83385 4.08533 4.16380 4.45212 4.58364 4.74463 4.75751 4.84402 4.90157 4.90763 5.09256 5.11001 5.26379 5.44060 5.62114 5.69217 5.77120 5.91236 6.10408 6.39949 6.73392 6.74668 6.97455 7.33873 7.58443 8.89536 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.051314 B = 0.004669 C = 0.004627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.526330 B = 5995.751479 C = 6050.565425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.063 3.937 3 C -0.278 4.278 4 C 0.111 3.889 5 C -0.069 4.069 6 C 0.499 3.501 7 O -0.598 6.598 8 N -0.702 5.702 9 C 0.270 3.730 10 H -0.004 1.004 11 C -0.133 4.133 12 C -0.544 4.544 13 H 0.078 0.922 14 C 0.012 3.988 15 N -0.920 5.920 16 Si 0.973 3.027 17 H -0.257 1.257 18 H -0.286 1.286 19 H -0.280 1.280 20 N -0.471 5.471 21 H 0.444 0.556 22 N -0.329 5.329 23 H 0.078 0.922 24 H 0.098 0.902 25 H 0.079 0.921 26 H 0.155 0.845 27 H 0.140 0.860 28 H 0.152 0.848 29 H 0.409 0.591 30 H 0.009 0.991 31 H 0.043 0.957 32 H 0.063 0.937 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.249 -4.301 -14.353 15.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.103 4.103 3 C -0.308 4.308 4 C -0.018 4.018 5 C -0.110 4.110 6 C 0.286 3.714 7 O -0.479 6.479 8 N -0.351 5.351 9 C 0.166 3.834 10 H 0.013 0.987 11 C -0.192 4.192 12 C -0.582 4.582 13 H 0.096 0.904 14 C -0.187 4.187 15 N -0.559 5.559 16 Si 0.797 3.203 17 H -0.180 1.180 18 H -0.212 1.212 19 H -0.206 1.206 20 N -0.180 5.180 21 H 0.290 0.710 22 N -0.153 5.153 23 H 0.097 0.903 24 H 0.116 0.884 25 H 0.098 0.902 26 H 0.173 0.827 27 H 0.158 0.842 28 H 0.169 0.831 29 H 0.245 0.755 30 H 0.028 0.972 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.678 -5.815 -13.516 15.772 hybrid contribution 1.135 1.327 0.485 1.812 sum -4.543 -4.488 -13.031 14.512 Atomic orbital electron populations 1.20297 0.84474 1.04541 1.03588 1.22895 0.98650 0.90378 0.98364 1.21401 0.91450 1.00574 1.17331 1.20680 0.96884 0.84844 0.99431 1.20389 0.95461 1.01422 0.93716 1.21083 0.80214 0.78464 0.91682 1.90703 1.52175 1.56569 1.48466 1.46205 1.29156 1.49138 1.10612 1.18323 0.93419 0.92975 0.78704 0.98651 1.21894 0.98516 0.96058 1.02751 1.21602 1.36147 1.06501 0.93945 0.90418 1.25827 0.96796 1.01224 0.94903 1.70073 1.46899 1.40583 0.98306 0.85285 0.77752 0.78431 0.78784 1.18017 1.21176 1.20631 1.46201 1.07265 1.05051 1.59501 0.71049 1.77143 0.87272 1.23539 1.27390 0.90295 0.88355 0.90182 0.82733 0.84187 0.83063 0.75508 0.97208 0.93799 0.91782 0.92650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.38 10.45 71.23 0.74 -0.64 16 2 C 0.06 1.79 7.22 43.10 0.31 2.10 16 3 C -0.28 -8.03 10.65 21.99 0.23 -7.79 16 4 C 0.11 3.10 5.70 41.41 0.24 3.34 16 5 C -0.07 -1.57 6.25 29.10 0.18 -1.39 16 6 C 0.50 18.25 7.79 87.66 0.68 18.93 16 7 O -0.60 -28.81 15.70 -3.04 -0.05 -28.86 16 8 N -0.70 -26.74 5.07 -446.10 -2.26 -29.00 16 9 C 0.27 13.61 2.56 44.25 0.11 13.72 16 10 H 0.00 -0.27 7.58 -2.39 -0.02 -0.29 16 11 C -0.13 -6.65 9.26 71.98 0.67 -5.98 16 12 C -0.54 -27.89 8.73 25.60 0.22 -27.67 16 13 H 0.08 3.66 7.74 -2.91 -0.02 3.64 16 14 C 0.01 0.65 5.30 84.65 0.45 1.10 16 15 N -0.92 -52.50 11.32 21.45 0.24 -52.25 16 16 Si 0.97 41.11 29.54 68.60 2.03 43.13 16 17 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 18 H -0.29 -12.14 7.11 99.48 0.71 -11.43 16 19 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 20 N -0.47 -13.10 7.36 -48.00 -0.35 -13.45 16 21 H 0.44 9.77 8.96 -213.34 -1.91 7.86 16 22 N -0.33 -10.23 12.70 -47.39 -0.60 -10.83 16 23 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.15 3.96 8.06 -2.91 -0.02 3.93 16 27 H 0.14 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.15 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.41 12.31 8.54 -92.71 -0.79 11.52 16 30 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.06 3.54 6.07 -2.39 -0.01 3.53 16 33 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -73.69 289.15 1.28 -72.41 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: -1.57 Total: 23.14 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: 3.84 Total: -4.28 kcal Atomic # 7 Polarization: -102.57 SS G_CDS: -2.97 Total: -105.54 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -0.05 Total: -28.86 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.13 kcal Total: -73.69 1.28 -72.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260061741.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.762 kcal (2) G-P(sol) polarization free energy of solvation -73.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds