Wall clock time and date at job start Thu Apr 9 2020 12:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35451 * 117.00240 * 2 1 4 4 N 1.32324 * 119.15184 * 0.02562 * 3 2 1 5 5 C 1.32517 * 120.94664 * 179.97438 * 4 3 2 6 6 C 1.50695 * 120.36495 * 179.97438 * 5 4 3 7 7 C 1.38116 * 119.27059 * 0.02562 * 5 4 3 8 8 C 1.39628 * 118.44912 * 359.97392 * 7 5 4 9 9 N 1.38544 * 120.49465 * 180.02562 * 8 7 5 10 10 C 1.46499 * 119.99569 * 359.97239 * 9 8 7 11 11 H 1.08996 * 109.47447 * 325.00313 * 10 9 8 12 12 C 1.53002 * 109.46848 * 85.00767 * 10 9 8 13 13 C 1.50701 * 109.47114 * 205.00103 * 10 9 8 14 14 H 1.08001 * 119.99427 * 0.02562 * 13 10 9 15 15 C 1.37874 * 119.99927 * 180.02562 * 13 10 9 16 16 N 1.31507 * 120.00308 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 119.99636 * 180.02562 * 15 13 10 18 18 H 1.48502 * 109.47489 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47254 * 119.99795 * 17 15 13 20 20 H 1.48497 * 109.47327 * 239.99733 * 17 15 13 21 21 N 1.32262 * 119.15631 * 179.97438 * 3 2 1 22 22 H 1.09008 * 109.47321 * 299.99663 * 1 2 3 23 23 H 1.08997 * 109.47039 * 59.99765 * 1 2 3 24 24 H 1.09003 * 109.47358 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47319 * 89.99773 * 6 5 4 26 26 H 1.08999 * 109.47755 * 210.00301 * 6 5 4 27 27 H 1.09009 * 109.47402 * 330.00315 * 6 5 4 28 28 H 1.07991 * 120.77549 * 180.02562 * 7 5 4 29 29 H 0.96997 * 119.99694 * 179.97438 * 9 8 7 30 30 H 1.08996 * 109.47468 * 59.99558 * 12 10 9 31 31 H 1.08998 * 109.46960 * 179.97438 * 12 10 9 32 32 H 1.09004 * 109.47110 * 299.99718 * 12 10 9 33 33 H 0.96998 * 120.00355 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2069 0.0000 4 7 1.3070 2.3059 0.0005 5 6 1.8714 3.5048 0.0010 6 6 1.0194 4.7478 0.0010 7 6 3.2491 3.6027 0.0005 8 6 3.9995 2.4252 0.0000 9 7 5.3841 2.4740 0.0000 10 6 6.0714 3.7678 -0.0001 11 1 5.4985 4.4836 -0.5895 12 6 6.1998 4.2771 1.4370 13 6 7.4443 3.6073 -0.6006 14 1 7.7718 2.6385 -0.9478 15 6 8.2820 4.6972 -0.7066 16 7 7.8830 5.8769 -0.2843 17 14 9.9834 4.4982 -1.4516 18 1 10.1880 3.0817 -1.8476 19 1 10.1045 5.3687 -2.6487 20 1 11.0102 4.8864 -0.4515 21 7 3.3657 1.2566 0.0005 22 1 -0.3634 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 0.8136 5.0473 1.0287 26 1 1.5482 5.5509 -0.5124 27 1 0.0800 4.5445 -0.5132 28 1 3.7345 4.5673 0.0013 29 1 5.8983 1.6516 0.0000 30 1 6.7727 3.5613 2.0264 31 1 6.7115 5.2395 1.4370 32 1 5.2068 4.3932 1.8714 33 1 8.4725 6.6436 -0.3585 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260183190.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:14 Heat of formation + Delta-G solvation = 10.826889 kcal Electronic energy + Delta-G solvation = -16588.658122 eV Core-core repulsion = 13843.103399 eV Total energy + Delta-G solvation = -2745.554723 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.60829 -38.16989 -36.16591 -33.88230 -32.59151 -30.56348 -28.75134 -27.81819 -27.01814 -25.36386 -23.00934 -21.99903 -20.38499 -18.24292 -17.53429 -16.42894 -16.02546 -15.42077 -14.98578 -14.67609 -14.30610 -14.06192 -13.54602 -12.94638 -12.88817 -12.56287 -12.18364 -12.05990 -11.77943 -11.47755 -11.15646 -10.93654 -10.78924 -10.54920 -10.33979 -10.29700 -10.15020 -9.19374 -8.77572 -8.65904 -8.57468 -7.29483 -6.26799 -4.35081 1.66470 1.97075 2.86768 3.18088 3.26642 3.30660 4.07842 4.31684 4.39425 4.48498 5.07014 5.13786 5.32325 5.38768 5.57136 5.59570 5.72051 5.73818 5.84108 6.10487 6.21532 6.52713 6.61216 6.79067 6.88125 7.09102 7.29330 7.55541 7.64755 7.69390 7.93134 8.12360 8.46001 8.67225 8.88912 9.32771 10.79588 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.039442 B = 0.005710 C = 0.005224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.736759 B = 4902.875089 C = 5358.848843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 O -0.298 6.298 3 C 0.533 3.467 4 N -0.625 5.625 5 C 0.219 3.781 6 C -0.100 4.100 7 C -0.320 4.320 8 C 0.475 3.525 9 N -0.677 5.677 10 C 0.267 3.733 11 H 0.047 0.953 12 C -0.154 4.154 13 C -0.533 4.533 14 H 0.065 0.935 15 C 0.068 3.932 16 N -0.885 5.885 17 Si 0.905 3.095 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.282 1.282 21 N -0.601 5.601 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.095 0.905 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.147 0.853 29 H 0.400 0.600 30 H 0.032 0.968 31 H 0.095 0.905 32 H 0.015 0.985 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.372 -3.087 1.079 11.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.200 6.200 3 C 0.227 3.773 4 N -0.363 5.363 5 C 0.080 3.920 6 C -0.157 4.157 7 C -0.349 4.349 8 C 0.228 3.772 9 N -0.303 5.303 10 C 0.165 3.835 11 H 0.065 0.935 12 C -0.213 4.213 13 C -0.571 4.571 14 H 0.083 0.917 15 C -0.135 4.135 16 N -0.523 5.523 17 Si 0.732 3.268 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.208 1.208 21 N -0.340 5.340 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.113 0.887 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.094 0.906 28 H 0.165 0.835 29 H 0.235 0.765 30 H 0.051 0.949 31 H 0.113 0.887 32 H 0.034 0.966 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.538 -3.810 1.089 12.199 hybrid contribution 1.393 0.453 -0.339 1.503 sum -10.145 -3.356 0.750 10.712 Atomic orbital electron populations 1.22825 0.76624 1.02525 1.02550 1.86011 1.22607 1.23653 1.87750 1.20056 0.85202 0.84272 0.87723 1.67778 1.40734 0.98364 1.29388 1.20892 0.91173 0.92072 0.87840 1.20690 0.99131 0.92767 1.03114 1.21915 0.94552 0.99941 1.18539 1.18358 0.86828 0.87239 0.84741 1.45588 1.00118 1.11860 1.72703 1.18968 0.91918 0.78528 0.94045 0.93541 1.22205 0.98190 1.03680 0.97186 1.21198 0.98592 0.95976 1.41377 0.91703 1.24853 0.98807 0.94876 0.94975 1.69866 1.36855 0.99666 1.45898 0.86331 0.83198 0.78428 0.78852 1.19623 1.20769 1.20756 1.66903 1.08097 1.28771 1.30274 0.92303 0.92297 0.88697 0.90194 0.90206 0.90637 0.83505 0.76544 0.94856 0.88675 0.96607 0.92449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.60 10.36 101.05 1.05 1.65 16 2 O -0.30 -5.12 10.55 -18.05 -0.19 -5.31 16 3 C 0.53 10.36 8.49 -91.30 -0.77 9.59 16 4 N -0.63 -11.21 9.16 -11.03 -0.10 -11.31 16 5 C 0.22 3.75 6.81 -82.34 -0.56 3.19 16 6 C -0.10 -1.23 10.21 36.00 0.37 -0.86 16 7 C -0.32 -6.15 8.60 -39.11 -0.34 -6.49 16 8 C 0.48 10.00 7.69 -154.81 -1.19 8.81 16 9 N -0.68 -14.61 5.22 -54.92 -0.29 -14.90 16 10 C 0.27 6.29 2.26 -69.08 -0.16 6.14 16 11 H 0.05 1.17 6.51 -51.93 -0.34 0.83 16 12 C -0.15 -3.50 9.23 37.16 0.34 -3.16 16 13 C -0.53 -13.64 8.73 -34.44 -0.30 -13.94 16 14 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 15 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 16 N -0.89 -23.33 11.32 55.43 0.63 -22.71 16 17 Si 0.90 20.11 29.54 -169.99 -5.02 15.09 16 18 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 21 N -0.60 -12.74 10.50 -13.96 -0.15 -12.89 16 22 H 0.06 0.68 8.09 -51.92 -0.42 0.26 16 23 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 24 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 25 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.08 0.90 8.09 -51.93 -0.42 0.48 16 27 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 28 H 0.15 2.80 6.29 -52.49 -0.33 2.47 16 29 H 0.40 8.36 8.66 -40.82 -0.35 8.01 16 30 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 32 H 0.01 0.32 7.75 -51.93 -0.40 -0.08 16 33 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 LS Contribution 283.44 15.07 4.27 4.27 Total: -1.00 -28.34 283.44 -6.73 -35.08 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -4.23 Total: 6.09 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: -1.66 Total: 6.58 kcal Atomic # 7 Polarization: -61.89 SS G_CDS: 0.09 Total: -61.80 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: -0.19 Total: -5.31 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -28.34 -6.73 -35.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260183190.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.904 kcal (2) G-P(sol) polarization free energy of solvation -28.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds