Wall clock time and date at job start Thu Apr 9 2020 12:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35451 * 117.00240 * 2 1 4 4 N 1.32324 * 119.15184 * 0.02562 * 3 2 1 5 5 C 1.32517 * 120.94664 * 179.97438 * 4 3 2 6 6 C 1.50695 * 120.36495 * 179.97438 * 5 4 3 7 7 C 1.38116 * 119.27059 * 0.02562 * 5 4 3 8 8 C 1.39628 * 118.44912 * 359.97392 * 7 5 4 9 9 N 1.38544 * 120.49465 * 180.02562 * 8 7 5 10 10 C 1.46499 * 119.99569 * 359.97239 * 9 8 7 11 11 H 1.08996 * 109.47447 * 325.00313 * 10 9 8 12 12 C 1.53002 * 109.46848 * 85.00767 * 10 9 8 13 13 C 1.50701 * 109.47114 * 205.00103 * 10 9 8 14 14 H 1.08001 * 119.99427 * 0.02562 * 13 10 9 15 15 C 1.37874 * 119.99927 * 180.02562 * 13 10 9 16 16 N 1.31507 * 120.00308 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 119.99636 * 180.02562 * 15 13 10 18 18 H 1.48502 * 109.47489 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47254 * 119.99795 * 17 15 13 20 20 H 1.48497 * 109.47327 * 239.99733 * 17 15 13 21 21 N 1.32262 * 119.15631 * 179.97438 * 3 2 1 22 22 H 1.09008 * 109.47321 * 299.99663 * 1 2 3 23 23 H 1.08997 * 109.47039 * 59.99765 * 1 2 3 24 24 H 1.09003 * 109.47358 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47319 * 89.99773 * 6 5 4 26 26 H 1.08999 * 109.47755 * 210.00301 * 6 5 4 27 27 H 1.09009 * 109.47402 * 330.00315 * 6 5 4 28 28 H 1.07991 * 120.77549 * 180.02562 * 7 5 4 29 29 H 0.96997 * 119.99694 * 179.97438 * 9 8 7 30 30 H 1.08996 * 109.47468 * 59.99558 * 12 10 9 31 31 H 1.08998 * 109.46960 * 179.97438 * 12 10 9 32 32 H 1.09004 * 109.47110 * 299.99718 * 12 10 9 33 33 H 0.96998 * 120.00355 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2069 0.0000 4 7 1.3070 2.3059 0.0005 5 6 1.8714 3.5048 0.0010 6 6 1.0194 4.7478 0.0010 7 6 3.2491 3.6027 0.0005 8 6 3.9995 2.4252 0.0000 9 7 5.3841 2.4740 0.0000 10 6 6.0714 3.7678 -0.0001 11 1 5.4985 4.4836 -0.5895 12 6 6.1998 4.2771 1.4370 13 6 7.4443 3.6073 -0.6006 14 1 7.7718 2.6385 -0.9478 15 6 8.2820 4.6972 -0.7066 16 7 7.8830 5.8769 -0.2843 17 14 9.9834 4.4982 -1.4516 18 1 10.1880 3.0817 -1.8476 19 1 10.1045 5.3687 -2.6487 20 1 11.0102 4.8864 -0.4515 21 7 3.3657 1.2566 0.0005 22 1 -0.3634 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 0.8136 5.0473 1.0287 26 1 1.5482 5.5509 -0.5124 27 1 0.0800 4.5445 -0.5132 28 1 3.7345 4.5673 0.0013 29 1 5.8983 1.6516 0.0000 30 1 6.7727 3.5613 2.0264 31 1 6.7115 5.2395 1.4370 32 1 5.2068 4.3932 1.8714 33 1 8.4725 6.6436 -0.3585 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260183190.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:14 Heat of formation + Delta-G solvation = -9.421845 kcal Electronic energy + Delta-G solvation = -16589.536173 eV Core-core repulsion = 13843.103399 eV Total energy + Delta-G solvation = -2746.432774 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.06200 -39.53250 -37.80554 -35.47590 -34.29436 -32.10537 -30.35371 -29.13924 -28.15176 -27.29920 -24.49503 -23.49091 -22.08472 -19.77544 -18.99928 -18.15058 -17.34543 -17.05468 -16.79174 -16.16601 -15.63745 -15.36652 -15.13559 -14.49438 -14.25922 -14.02247 -13.68115 -13.18560 -13.10697 -12.96358 -12.79847 -12.72550 -12.38949 -12.19428 -12.10872 -11.82004 -11.65770 -11.09433 -10.60243 -10.16702 -10.15243 -8.91536 -8.21878 -6.36543 0.22076 0.45099 1.42565 1.45022 1.52091 1.57904 2.35834 2.62090 2.90752 3.09660 3.19954 3.78119 4.13849 4.39195 4.46362 4.46552 4.54587 4.69187 4.75676 4.81292 4.86367 4.94640 4.98459 5.05503 5.30072 5.40865 5.57908 5.66826 5.82660 6.02240 6.26105 6.46201 6.66103 6.86989 7.29875 7.38898 8.84017 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.039442 B = 0.005710 C = 0.005224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.736759 B = 4902.875089 C = 5358.848843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.312 6.312 3 C 0.523 3.477 4 N -0.615 5.615 5 C 0.226 3.774 6 C -0.096 4.096 7 C -0.337 4.337 8 C 0.461 3.539 9 N -0.684 5.684 10 C 0.278 3.722 11 H 0.028 0.972 12 C -0.140 4.140 13 C -0.552 4.552 14 H 0.060 0.940 15 C 0.027 3.973 16 N -0.907 5.907 17 Si 0.965 3.035 18 H -0.271 1.271 19 H -0.279 1.279 20 H -0.277 1.277 21 N -0.626 5.626 22 H 0.063 0.937 23 H 0.062 0.938 24 H 0.131 0.869 25 H 0.100 0.900 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.144 0.856 29 H 0.399 0.601 30 H 0.029 0.971 31 H 0.077 0.923 32 H 0.028 0.972 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.552 -3.068 0.990 12.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.214 6.214 3 C 0.218 3.782 4 N -0.353 5.353 5 C 0.086 3.914 6 C -0.153 4.153 7 C -0.365 4.365 8 C 0.215 3.785 9 N -0.311 5.311 10 C 0.175 3.825 11 H 0.046 0.954 12 C -0.199 4.199 13 C -0.590 4.590 14 H 0.078 0.922 15 C -0.174 4.174 16 N -0.545 5.545 17 Si 0.790 3.210 18 H -0.195 1.195 19 H -0.205 1.205 20 H -0.203 1.203 21 N -0.366 5.366 22 H 0.081 0.919 23 H 0.081 0.919 24 H 0.149 0.851 25 H 0.119 0.881 26 H 0.110 0.890 27 H 0.111 0.889 28 H 0.162 0.838 29 H 0.234 0.766 30 H 0.048 0.952 31 H 0.095 0.905 32 H 0.047 0.953 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.759 -3.814 1.003 13.355 hybrid contribution 1.589 0.397 -0.309 1.667 sum -11.170 -3.417 0.694 11.702 Atomic orbital electron populations 1.23205 0.73859 1.05092 1.02901 1.86018 1.25308 1.22725 1.87305 1.20373 0.85028 0.85434 0.87353 1.67958 1.40103 0.98290 1.28940 1.21656 0.91020 0.93382 0.85359 1.20837 0.99029 0.90619 1.04798 1.22008 0.95563 0.99161 1.19803 1.18536 0.86567 0.88049 0.85319 1.45338 1.00606 1.10996 1.74127 1.18667 0.90988 0.79020 0.93839 0.95426 1.22020 0.98573 1.02401 0.96907 1.21467 0.99741 0.95970 1.41849 0.92161 1.25562 1.01971 0.94618 0.95283 1.69956 1.37969 1.00164 1.46410 0.85399 0.79238 0.78229 0.78096 1.19547 1.20471 1.20275 1.66839 1.09383 1.29120 1.31261 0.91857 0.91926 0.85117 0.88144 0.88981 0.88929 0.83786 0.76603 0.95170 0.90485 0.95293 0.92222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.94 10.36 113.37 1.17 2.12 16 2 O -0.31 -10.30 10.55 -87.49 -0.92 -11.22 16 3 C 0.52 19.92 8.49 180.58 1.53 21.45 16 4 N -0.62 -21.04 9.16 -301.77 -2.76 -23.80 16 5 C 0.23 7.35 6.81 42.42 0.29 7.64 16 6 C -0.10 -2.08 10.21 71.23 0.73 -1.35 16 7 C -0.34 -12.81 8.60 22.58 0.19 -12.62 16 8 C 0.46 19.54 7.69 133.17 1.02 20.57 16 9 N -0.68 -30.12 5.22 -327.66 -1.71 -31.83 16 10 C 0.28 13.31 2.26 44.25 0.10 13.41 16 11 H 0.03 1.43 6.51 -2.39 -0.02 1.42 16 12 C -0.14 -6.45 9.23 71.98 0.66 -5.79 16 13 C -0.55 -28.58 8.73 25.60 0.22 -28.35 16 14 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 15 C 0.03 1.38 5.30 84.66 0.45 1.83 16 16 N -0.91 -48.00 11.32 21.45 0.24 -47.75 16 17 Si 0.97 41.13 29.54 68.60 2.03 43.16 16 18 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 19 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 20 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 21 N -0.63 -26.61 10.50 -311.08 -3.27 -29.88 16 22 H 0.06 1.30 8.09 -2.38 -0.02 1.28 16 23 H 0.06 1.30 8.09 -2.39 -0.02 1.28 16 24 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.09 1.82 8.09 -2.39 -0.02 1.80 16 27 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 28 H 0.14 5.51 6.29 -2.92 -0.02 5.49 16 29 H 0.40 17.17 8.66 -92.71 -0.80 16.37 16 30 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.08 3.84 6.07 -2.39 -0.01 3.82 16 32 H 0.03 1.20 7.75 -2.39 -0.02 1.19 16 33 H 0.27 13.43 8.31 -92.71 -0.77 12.66 16 Total: -1.00 -60.21 283.44 0.31 -59.90 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: 0.32 Total: 22.53 kcal Atomic # 6 Polarization: 12.52 SS G_CDS: 6.38 Total: 18.90 kcal Atomic # 7 Polarization: -125.77 SS G_CDS: -7.50 Total: -133.26 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: -0.92 Total: -11.22 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Total: -60.21 0.31 -59.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260183190.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.479 kcal (2) G-P(sol) polarization free energy of solvation -60.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds