Wall clock time and date at job start Thu Apr 9 2020 12:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.47583 * 2 1 4 4 N 1.31133 * 126.54843 * 90.00192 * 3 2 1 5 5 C 1.34494 * 105.61363 * 180.02562 * 4 3 2 6 6 C 1.50697 * 126.28886 * 179.97438 * 5 4 3 7 7 N 1.46501 * 109.47193 * 89.99751 * 6 5 4 8 8 C 1.36936 * 119.99818 * 89.99866 * 7 6 5 9 9 H 1.07999 * 119.99955 * 214.90485 * 8 7 6 10 10 C 1.38811 * 119.99970 * 34.91352 * 8 7 6 11 11 N 1.31614 * 120.00569 * 21.81804 * 10 8 7 12 12 Si 1.86800 * 119.99690 * 201.81649 * 10 8 7 13 13 H 1.48501 * 109.47030 * 179.97438 * 12 10 8 14 14 H 1.48499 * 109.47152 * 300.00034 * 12 10 8 15 15 H 1.48500 * 109.47370 * 59.99937 * 12 10 8 16 16 C 1.46494 * 119.99968 * 270.00039 * 7 6 5 17 17 C 1.52996 * 117.50108 * 191.99481 * 16 7 6 18 18 C 1.53002 * 60.00155 * 252.50641 * 17 16 7 19 19 N 1.29951 * 107.42554 * 0.24039 * 5 4 3 20 20 O 1.21307 * 110.24535 * 359.57953 * 19 5 4 21 21 H 1.09001 * 109.47327 * 59.99529 * 1 2 3 22 22 H 1.08995 * 109.47609 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.46898 * 299.99801 * 1 2 3 24 24 H 1.09001 * 109.46693 * 239.99518 * 2 1 3 25 25 H 1.09001 * 109.46804 * 120.00527 * 2 1 3 26 26 H 1.08994 * 109.47074 * 329.99394 * 6 5 4 27 27 H 1.09000 * 109.47136 * 209.99418 * 6 5 4 28 28 H 0.97000 * 120.00619 * 179.89953 * 11 10 8 29 29 H 1.09007 * 115.55095 * 337.69960 * 16 7 6 30 30 H 1.09003 * 117.49923 * 359.97438 * 17 16 7 31 31 H 1.09003 * 117.50057 * 145.01654 * 17 16 7 32 32 H 1.08992 * 117.50000 * 252.50780 * 18 17 16 33 33 H 1.08997 * 117.51251 * 107.47369 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 7 2.2928 2.1569 1.0535 5 6 2.7111 3.3414 0.5729 6 6 3.1328 4.5362 1.3887 7 7 4.5719 4.4635 1.6533 8 6 5.4583 5.0349 0.7798 9 1 6.4183 4.5720 0.6047 10 6 5.1232 6.2091 0.1197 11 7 4.1927 6.9987 0.6125 12 14 5.9929 6.6685 -1.4684 13 1 5.4562 7.9586 -1.9713 14 1 7.4497 6.8033 -1.2139 15 1 5.7637 5.6085 -2.4829 16 6 5.0626 3.7796 2.8523 17 6 6.5340 3.9737 3.2240 18 6 6.0588 2.6352 2.6551 19 7 2.6793 3.2683 -0.7242 20 8 2.2973 2.1712 -1.0735 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 2.5895 4.5411 2.3335 27 1 2.9106 5.4496 0.8370 28 1 3.9595 7.8199 0.1520 29 1 4.3451 3.6874 3.6677 30 1 7.1371 4.6099 2.5762 31 1 6.7848 4.0093 4.2842 32 1 5.9970 1.7903 3.3409 33 1 6.3488 2.3911 1.6332 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264262848.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:28 Heat of formation + Delta-G solvation = 110.036600 kcal Electronic energy + Delta-G solvation = -17064.562233 eV Core-core repulsion = 14323.309566 eV Total energy + Delta-G solvation = -2741.252667 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.76657 -37.17282 -35.34595 -34.44283 -33.24885 -30.90889 -30.08953 -26.64753 -24.58786 -24.07129 -22.38395 -21.38724 -20.60648 -19.78565 -17.46034 -16.88239 -16.17811 -15.58234 -14.96695 -14.41706 -14.33440 -13.93507 -13.25710 -12.94180 -12.73486 -12.14215 -11.90779 -11.65004 -11.29593 -11.11894 -10.88213 -10.81738 -10.69114 -10.61725 -10.49428 -10.24492 -10.07091 -9.70622 -9.42745 -9.04779 -8.48743 -6.71782 -5.93663 -3.49214 1.88628 3.07518 3.35077 3.40281 3.42359 3.45870 4.33220 4.42269 4.89855 4.97887 5.05525 5.11178 5.25252 5.26428 5.37422 5.65181 5.83006 5.88061 5.89068 6.05158 6.10943 6.19339 6.46418 6.54569 6.56005 6.65533 6.85250 6.95369 7.13497 7.35178 7.72156 8.34705 9.00995 9.06076 9.65241 10.18546 11.08002 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.022663 B = 0.008911 C = 0.007217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.220483 B = 3141.496973 C = 3878.538167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.023 4.023 3 C 0.142 3.858 4 N -0.478 5.478 5 C 0.176 3.824 6 C 0.221 3.779 7 N -0.536 5.536 8 C -0.264 4.264 9 H 0.064 0.936 10 C 0.021 3.979 11 N -0.884 5.884 12 Si 0.902 3.098 13 H -0.287 1.287 14 H -0.280 1.280 15 H -0.280 1.280 16 C 0.128 3.872 17 C -0.191 4.191 18 C -0.224 4.224 19 N -0.377 5.377 20 O 0.060 5.940 21 H 0.060 0.940 22 H 0.070 0.930 23 H 0.063 0.937 24 H 0.093 0.907 25 H 0.102 0.898 26 H 0.060 0.940 27 H 0.127 0.873 28 H 0.260 0.740 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.467 -11.408 0.476 12.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.062 4.062 3 C -0.079 4.079 4 N -0.213 5.213 5 C -0.099 4.099 6 C 0.092 3.908 7 N -0.252 5.252 8 C -0.393 4.393 9 H 0.082 0.918 10 C -0.180 4.180 11 N -0.525 5.525 12 Si 0.731 3.269 13 H -0.213 1.213 14 H -0.206 1.206 15 H -0.206 1.206 16 C 0.019 3.981 17 C -0.230 4.230 18 C -0.265 4.265 19 N -0.087 5.087 20 O 0.004 5.996 21 H 0.079 0.921 22 H 0.089 0.911 23 H 0.082 0.918 24 H 0.112 0.888 25 H 0.120 0.880 26 H 0.078 0.922 27 H 0.144 0.856 28 H 0.070 0.930 29 H 0.110 0.890 30 H 0.118 0.882 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.278 -10.411 0.315 11.677 hybrid contribution 0.567 -0.042 -0.944 1.102 sum -4.711 -10.453 -0.630 11.483 Atomic orbital electron populations 1.21765 0.93198 1.02670 1.03062 1.19980 0.96673 0.84446 1.05067 1.28667 0.98569 0.98611 0.82086 1.71874 1.17386 1.03135 1.28911 1.27940 0.96458 0.97049 0.88490 1.19616 0.84303 0.91121 0.95791 1.43270 1.01020 1.60459 1.20424 1.18895 0.99252 1.02912 1.18278 0.91797 1.25103 0.98566 0.94588 0.99781 1.69882 1.33496 1.11318 1.37839 0.86378 0.79210 0.77523 0.83835 1.21294 1.20559 1.20557 1.21133 0.89898 0.96373 0.90654 1.23085 1.00474 0.99840 0.99588 1.23311 1.10153 0.92157 1.00869 1.74692 1.18403 0.98664 1.16927 1.85264 1.60200 1.18162 1.35947 0.92061 0.91071 0.91793 0.88818 0.87984 0.92176 0.85569 0.93010 0.89002 0.88242 0.90494 0.90767 0.90117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.90 37.16 0.37 -0.97 16 2 C -0.02 -0.24 6.56 -27.88 -0.18 -0.42 16 3 C 0.14 2.43 7.77 -13.06 -0.10 2.32 16 4 N -0.48 -9.73 11.55 -9.87 -0.11 -9.84 16 5 C 0.18 4.08 7.80 -156.37 -1.22 2.86 16 6 C 0.22 5.43 5.96 -5.19 -0.03 5.40 16 7 N -0.54 -13.65 2.78 -167.03 -0.46 -14.11 16 8 C -0.26 -7.27 8.21 -15.06 -0.12 -7.40 16 9 H 0.06 1.79 7.14 -52.49 -0.37 1.41 16 10 C 0.02 0.57 4.97 -17.43 -0.09 0.48 16 11 N -0.88 -25.12 11.30 55.49 0.63 -24.49 16 12 Si 0.90 22.21 29.61 -169.99 -5.03 17.18 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 16 C 0.13 2.85 6.61 -67.93 -0.45 2.40 16 17 C -0.19 -3.90 9.78 -26.73 -0.26 -4.17 16 18 C -0.22 -4.54 10.14 -26.73 -0.27 -4.81 16 19 N -0.38 -8.88 12.16 30.90 0.38 -8.50 16 20 O 0.06 1.19 11.31 18.12 0.20 1.39 16 21 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.06 1.37 8.04 -51.93 -0.42 0.95 16 27 H 0.13 3.44 5.33 -51.93 -0.28 3.16 16 28 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.09 1.90 8.11 -51.92 -0.42 1.47 16 30 H 0.10 2.23 6.81 -51.93 -0.35 1.87 16 31 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 LS Contribution 286.60 15.07 4.32 4.32 Total: -1.00 -30.92 286.60 -6.80 -37.73 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -4.36 Total: 0.63 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -2.36 Total: -4.30 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: 0.42 Total: -56.94 kcal Atomic # 8 Polarization: 1.19 SS G_CDS: 0.20 Total: 1.39 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.03 Total: 17.18 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.92 -6.80 -37.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264262848.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.763 kcal (2) G-P(sol) polarization free energy of solvation -30.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds