Wall clock time and date at job start Thu Apr 9 2020 12:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.47583 * 2 1 4 4 N 1.31133 * 126.54843 * 90.00192 * 3 2 1 5 5 C 1.34494 * 105.61363 * 180.02562 * 4 3 2 6 6 C 1.50697 * 126.28886 * 179.97438 * 5 4 3 7 7 N 1.46501 * 109.47193 * 89.99751 * 6 5 4 8 8 C 1.36936 * 119.99818 * 89.99866 * 7 6 5 9 9 H 1.07999 * 119.99955 * 214.90485 * 8 7 6 10 10 C 1.38811 * 119.99970 * 34.91352 * 8 7 6 11 11 N 1.31614 * 120.00569 * 21.81804 * 10 8 7 12 12 Si 1.86800 * 119.99690 * 201.81649 * 10 8 7 13 13 H 1.48501 * 109.47030 * 179.97438 * 12 10 8 14 14 H 1.48499 * 109.47152 * 300.00034 * 12 10 8 15 15 H 1.48500 * 109.47370 * 59.99937 * 12 10 8 16 16 C 1.46494 * 119.99968 * 270.00039 * 7 6 5 17 17 C 1.52996 * 117.50108 * 191.99481 * 16 7 6 18 18 C 1.53002 * 60.00155 * 252.50641 * 17 16 7 19 19 N 1.29951 * 107.42554 * 0.24039 * 5 4 3 20 20 O 1.21307 * 110.24535 * 359.57953 * 19 5 4 21 21 H 1.09001 * 109.47327 * 59.99529 * 1 2 3 22 22 H 1.08995 * 109.47609 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.46898 * 299.99801 * 1 2 3 24 24 H 1.09001 * 109.46693 * 239.99518 * 2 1 3 25 25 H 1.09001 * 109.46804 * 120.00527 * 2 1 3 26 26 H 1.08994 * 109.47074 * 329.99394 * 6 5 4 27 27 H 1.09000 * 109.47136 * 209.99418 * 6 5 4 28 28 H 0.97000 * 120.00619 * 179.89953 * 11 10 8 29 29 H 1.09007 * 115.55095 * 337.69960 * 16 7 6 30 30 H 1.09003 * 117.49923 * 359.97438 * 17 16 7 31 31 H 1.09003 * 117.50057 * 145.01654 * 17 16 7 32 32 H 1.08992 * 117.50000 * 252.50780 * 18 17 16 33 33 H 1.08997 * 117.51251 * 107.47369 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 7 2.2928 2.1569 1.0535 5 6 2.7111 3.3414 0.5729 6 6 3.1328 4.5362 1.3887 7 7 4.5719 4.4635 1.6533 8 6 5.4583 5.0349 0.7798 9 1 6.4183 4.5720 0.6047 10 6 5.1232 6.2091 0.1197 11 7 4.1927 6.9987 0.6125 12 14 5.9929 6.6685 -1.4684 13 1 5.4562 7.9586 -1.9713 14 1 7.4497 6.8033 -1.2139 15 1 5.7637 5.6085 -2.4829 16 6 5.0626 3.7796 2.8523 17 6 6.5340 3.9737 3.2240 18 6 6.0588 2.6352 2.6551 19 7 2.6793 3.2683 -0.7242 20 8 2.2973 2.1712 -1.0735 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 2.5895 4.5411 2.3335 27 1 2.9106 5.4496 0.8370 28 1 3.9595 7.8199 0.1520 29 1 4.3451 3.6874 3.6677 30 1 7.1371 4.6099 2.5762 31 1 6.7848 4.0093 4.2842 32 1 5.9970 1.7903 3.3409 33 1 6.3488 2.3911 1.6332 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264262848.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:27 Heat of formation + Delta-G solvation = 89.799233 kcal Electronic energy + Delta-G solvation = -17065.439791 eV Core-core repulsion = 14323.309566 eV Total energy + Delta-G solvation = -2742.130225 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -46.40763 -38.97077 -36.88369 -35.83014 -34.96215 -32.70010 -31.63950 -28.58852 -26.05619 -25.61348 -23.96402 -23.02365 -22.12569 -21.56368 -19.13457 -18.57587 -18.00591 -17.43051 -16.34282 -16.17803 -15.79474 -15.37393 -14.96162 -14.52261 -13.86640 -13.74174 -13.37992 -13.19608 -12.82425 -12.77912 -12.64789 -12.39348 -12.30009 -12.25348 -12.05986 -12.00582 -11.81831 -11.54688 -11.07148 -10.71650 -10.49611 -8.70288 -7.99607 -5.59231 0.41247 1.34076 1.40610 1.43268 1.46960 2.13548 2.39030 2.88972 3.08401 3.31411 3.44019 3.50917 4.15341 4.22491 4.26179 4.28202 4.42009 4.45449 4.67873 4.74782 4.86912 4.93310 4.99359 5.01947 5.04819 5.25220 5.30943 5.35014 5.38477 5.47467 5.56285 6.29845 6.96819 7.48325 7.65611 8.15782 8.98177 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.022663 B = 0.008911 C = 0.007217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.220483 B = 3141.496973 C = 3878.538167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.022 4.022 3 C 0.164 3.836 4 N -0.497 5.497 5 C 0.162 3.838 6 C 0.225 3.775 7 N -0.551 5.551 8 C -0.267 4.267 9 H 0.053 0.947 10 C -0.022 4.022 11 N -0.907 5.907 12 Si 0.952 3.048 13 H -0.284 1.284 14 H -0.269 1.269 15 H -0.290 1.290 16 C 0.101 3.899 17 C -0.182 4.182 18 C -0.205 4.205 19 N -0.414 5.414 20 O 0.063 5.937 21 H 0.056 0.944 22 H 0.106 0.894 23 H 0.049 0.951 24 H 0.125 0.875 25 H 0.119 0.881 26 H 0.068 0.932 27 H 0.097 0.903 28 H 0.258 0.742 29 H 0.108 0.892 30 H 0.074 0.926 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.625 -13.738 0.796 14.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.061 4.061 3 C -0.057 4.057 4 N -0.231 5.231 5 C -0.113 4.113 6 C 0.096 3.904 7 N -0.268 5.268 8 C -0.396 4.396 9 H 0.070 0.930 10 C -0.221 4.221 11 N -0.550 5.550 12 Si 0.779 3.221 13 H -0.209 1.209 14 H -0.194 1.194 15 H -0.217 1.217 16 C -0.007 4.007 17 C -0.220 4.220 18 C -0.245 4.245 19 N -0.124 5.124 20 O 0.007 5.993 21 H 0.075 0.925 22 H 0.125 0.875 23 H 0.068 0.932 24 H 0.143 0.857 25 H 0.137 0.863 26 H 0.086 0.914 27 H 0.114 0.886 28 H 0.067 0.933 29 H 0.126 0.874 30 H 0.093 0.907 31 H 0.129 0.871 32 H 0.125 0.875 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.428 -12.759 0.663 13.882 hybrid contribution 0.550 0.519 -1.023 1.273 sum -4.878 -12.240 -0.361 13.181 Atomic orbital electron populations 1.21775 0.91549 1.04723 1.02200 1.20485 0.97790 0.80410 1.07415 1.29975 0.95386 0.99977 0.80379 1.71834 1.18769 1.02555 1.29940 1.27598 0.97482 0.97698 0.88517 1.19304 0.84346 0.90820 0.95891 1.43374 1.00956 1.61051 1.21443 1.18934 0.99188 1.02686 1.18834 0.92952 1.25685 0.99573 0.94809 1.01995 1.69981 1.34739 1.11588 1.38723 0.85595 0.78950 0.76869 0.80669 1.20893 1.19440 1.21650 1.21419 0.91186 0.97743 0.90330 1.23089 0.98526 0.99359 1.01044 1.23234 1.08151 0.92825 1.00325 1.74661 1.19822 1.00602 1.17339 1.85207 1.60108 1.17505 1.36522 0.92450 0.87538 0.93191 0.85727 0.86281 0.91357 0.88551 0.93291 0.87404 0.90742 0.87121 0.87496 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.90 71.98 0.71 -1.39 16 2 C -0.02 -0.40 6.56 29.85 0.20 -0.20 16 3 C 0.16 5.29 7.77 88.38 0.69 5.98 16 4 N -0.50 -19.81 11.55 -303.20 -3.50 -23.31 16 5 C 0.16 7.60 7.80 138.46 1.08 8.68 16 6 C 0.23 11.36 5.96 85.63 0.51 11.87 16 7 N -0.55 -28.46 2.78 -682.36 -1.90 -30.36 16 8 C -0.27 -14.98 8.21 84.03 0.69 -14.29 16 9 H 0.05 3.00 7.14 -2.91 -0.02 2.98 16 10 C -0.02 -1.26 4.97 84.86 0.42 -0.84 16 11 N -0.91 -52.95 11.30 21.65 0.24 -52.71 16 12 Si 0.95 46.43 29.61 68.60 2.03 48.46 16 13 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 14 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 15 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 16 C 0.10 4.40 6.61 44.99 0.30 4.70 16 17 C -0.18 -7.16 9.78 30.59 0.30 -6.87 16 18 C -0.20 -7.95 10.14 30.60 0.31 -7.64 16 19 N -0.41 -19.69 12.16 -60.31 -0.73 -20.43 16 20 O 0.06 2.46 11.31 74.91 0.85 3.30 16 21 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 22 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 23 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 24 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.07 3.20 8.04 -2.39 -0.02 3.18 16 27 H 0.10 5.48 5.33 -2.39 -0.01 5.46 16 28 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 29 H 0.11 4.30 8.11 -2.38 -0.02 4.28 16 30 H 0.07 3.33 6.81 -2.39 -0.02 3.31 16 31 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 32 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 33 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -68.43 286.60 3.30 -65.14 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: 1.11 Total: 9.90 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: 5.20 Total: 0.01 kcal Atomic # 7 Polarization: -120.92 SS G_CDS: -5.89 Total: -126.81 kcal Atomic # 8 Polarization: 2.46 SS G_CDS: 0.85 Total: 3.30 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -68.43 3.30 -65.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264262848.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.937 kcal (2) G-P(sol) polarization free energy of solvation -68.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds