Wall clock time and date at job start Thu Apr 9 2020 12:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30172 * 125.50343 * 2 1 4 4 C 1.35755 * 108.86724 * 179.97438 * 3 2 1 5 5 C 1.47326 * 126.23812 * 179.97438 * 4 3 2 6 6 O 1.21621 * 120.00515 * 180.02562 * 5 4 3 7 7 N 1.34784 * 119.99489 * 0.02990 * 5 4 3 8 8 C 1.46502 * 119.99679 * 179.97438 * 7 5 4 9 9 C 1.53007 * 109.46747 * 179.97438 * 8 7 5 10 10 C 1.52995 * 109.46741 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.47094 * 179.97438 * 10 9 8 12 12 H 1.07999 * 119.99757 * 0.02562 * 11 10 9 13 13 C 1.37879 * 120.00111 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99984 * 180.02562 * 13 11 10 15 15 Si 1.86794 * 120.00183 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47474 * 89.99531 * 15 13 11 17 17 H 1.48503 * 109.47275 * 210.00321 * 15 13 11 18 18 H 1.48502 * 109.46911 * 329.99973 * 15 13 11 19 19 C 1.36427 * 107.53322 * 359.73693 * 4 3 2 20 20 N 1.35382 * 106.86682 * 0.41689 * 19 4 3 21 21 H 0.97001 * 126.13788 * 179.85411 * 20 19 4 22 22 H 1.09000 * 109.47418 * 270.03529 * 1 2 3 23 23 H 1.09003 * 109.46632 * 30.03209 * 1 2 3 24 24 H 1.08994 * 109.47215 * 150.02845 * 1 2 3 25 25 H 0.96995 * 119.99744 * 359.97438 * 7 5 4 26 26 H 1.09001 * 109.46994 * 299.99615 * 8 7 5 27 27 H 1.08992 * 109.47170 * 59.99718 * 8 7 5 28 28 H 1.08995 * 109.46540 * 299.99552 * 9 8 7 29 29 H 1.08992 * 109.46912 * 59.99740 * 9 8 7 30 30 H 1.09001 * 109.47207 * 299.99925 * 10 9 8 31 31 H 1.09005 * 109.47033 * 59.99911 * 10 9 8 32 32 H 0.97000 * 120.00423 * 180.02562 * 14 13 11 33 33 H 1.07994 * 126.57270 * 180.26565 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2629 1.0597 0.0000 4 6 3.5637 0.6710 0.0006 5 6 4.7383 1.5603 0.0002 6 8 5.8589 1.0876 0.0004 7 7 4.5710 2.8977 -0.0001 8 6 5.7390 3.7819 0.0001 9 6 5.2749 5.2399 -0.0010 10 6 6.4947 6.1634 -0.0001 11 6 6.0376 7.5994 -0.0019 12 1 4.9826 7.8302 -0.0030 13 6 6.9663 8.6185 -0.0020 14 7 6.5674 9.8716 -0.0030 15 14 8.7911 8.2193 -0.0007 16 1 9.2755 8.1125 -1.4004 17 1 9.5334 9.2984 0.6992 18 1 9.0151 6.9294 0.7003 19 6 3.5850 -0.6930 0.0069 20 7 2.2958 -1.1061 0.0006 21 1 1.9900 -2.0267 0.0009 22 1 -0.3634 0.0006 1.0276 23 1 -0.3633 0.8897 -0.5144 24 1 -0.3633 -0.8902 -0.5134 25 1 3.6773 3.2746 -0.0005 26 1 6.3385 3.5918 0.8904 27 1 6.3392 3.5914 -0.8895 28 1 4.6757 5.4296 -0.8915 29 1 4.6745 5.4307 0.8884 30 1 7.0936 5.9734 0.8906 31 1 7.0955 5.9726 -0.8894 32 1 7.2207 10.5887 -0.0034 33 1 4.4623 -1.3228 0.0130 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264959482.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:31 Heat of formation + Delta-G solvation = -0.690774 kcal Electronic energy + Delta-G solvation = -15711.767913 eV Core-core repulsion = 12965.713747 eV Total energy + Delta-G solvation = -2746.054166 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.38968 -39.03759 -35.39501 -33.37892 -32.84196 -32.13161 -31.24260 -27.83409 -26.89605 -23.82285 -21.99457 -21.17775 -20.53256 -19.71600 -18.40556 -16.79280 -16.11385 -15.87885 -15.56569 -15.05299 -14.35390 -14.17804 -13.79394 -13.75252 -13.30775 -13.03243 -12.77789 -12.64157 -11.93278 -11.83433 -10.99167 -10.83352 -10.57054 -10.38781 -10.20616 -9.91240 -9.73133 -9.55348 -9.15887 -8.85972 -8.57852 -8.49778 -6.00609 -3.98800 1.45002 2.20658 2.65218 3.35917 3.42969 3.48123 3.51471 3.61237 4.03446 4.49809 4.58607 4.92203 4.96652 5.11587 5.27981 5.33566 5.49904 5.59495 5.69414 5.76841 6.12199 6.21480 6.48157 6.55319 6.81265 6.88688 6.92508 7.31262 7.44515 7.51893 7.81165 7.90955 8.47025 8.57346 9.04021 9.61816 11.12754 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.048605 B = 0.003941 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.939211 B = 7102.242217 C = 7647.129642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.206 3.794 3 N -0.458 5.458 4 C -0.055 4.055 5 C 0.596 3.404 6 O -0.552 6.552 7 N -0.710 5.710 8 C 0.114 3.886 9 C -0.114 4.114 10 C -0.011 4.011 11 C -0.520 4.520 12 H 0.072 0.928 13 C 0.066 3.934 14 N -0.904 5.904 15 Si 0.880 3.120 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.264 1.264 19 C 0.030 3.970 20 N -0.564 5.564 21 H 0.423 0.577 22 H 0.083 0.917 23 H 0.094 0.906 24 H 0.074 0.926 25 H 0.408 0.592 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.019 0.981 31 H 0.014 0.986 32 H 0.263 0.737 33 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.668 -24.166 0.039 26.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.059 4.059 3 N -0.179 5.179 4 C -0.184 4.184 5 C 0.382 3.618 6 O -0.430 6.430 7 N -0.359 5.359 8 C -0.009 4.009 9 C -0.151 4.151 10 C -0.049 4.049 11 C -0.558 4.558 12 H 0.090 0.910 13 C -0.135 4.135 14 N -0.543 5.543 15 Si 0.707 3.293 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.189 1.189 19 C -0.109 4.109 20 N -0.168 5.168 21 H 0.261 0.739 22 H 0.101 0.899 23 H 0.113 0.887 24 H 0.093 0.907 25 H 0.243 0.757 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.037 0.963 31 H 0.033 0.967 32 H 0.072 0.928 33 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -11.022 -23.383 0.039 25.850 hybrid contribution 0.718 -1.148 -0.015 1.354 sum -10.304 -24.531 0.024 26.607 Atomic orbital electron populations 1.20228 0.84240 1.04381 1.03868 1.23537 0.95840 0.81212 1.05299 1.70602 1.00878 1.28365 1.18045 1.20745 0.91887 0.92001 1.13739 1.16921 0.86443 0.82039 0.76413 1.90783 1.24297 1.76086 1.51861 1.45964 1.11282 1.05374 1.73308 1.21679 0.87207 0.90050 1.01922 1.21704 1.00608 0.90944 1.01894 1.19508 0.93499 0.95269 0.96635 1.21121 0.95282 0.88611 1.50810 0.90971 1.25030 0.99043 0.94923 0.94540 1.69915 1.34362 0.98838 1.51226 0.86771 0.85560 0.78384 0.78559 1.20271 1.21429 1.18861 1.22643 0.87369 0.96173 1.04727 1.43135 1.06517 1.10461 1.56651 0.73870 0.89867 0.88713 0.90673 0.75697 0.91703 0.91713 0.92044 0.92024 0.96295 0.96735 0.92756 0.79169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.34 10.51 36.00 0.38 0.04 16 2 C 0.21 1.88 8.15 -154.94 -1.26 0.62 16 3 N -0.46 -5.96 11.01 -7.23 -0.08 -6.04 16 4 C -0.05 -0.76 6.98 -83.09 -0.58 -1.34 16 5 C 0.60 10.04 7.81 -12.56 -0.10 9.94 16 6 O -0.55 -10.67 16.88 5.26 0.09 -10.58 16 7 N -0.71 -11.70 5.55 -61.41 -0.34 -12.04 16 8 C 0.11 2.07 5.67 -4.04 -0.02 2.04 16 9 C -0.11 -2.27 5.27 -26.73 -0.14 -2.41 16 10 C -0.01 -0.27 4.04 -27.89 -0.11 -0.38 16 11 C -0.52 -15.06 9.66 -34.44 -0.33 -15.39 16 12 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 13 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 14 N -0.90 -28.30 13.96 55.43 0.77 -27.52 16 15 Si 0.88 22.17 27.47 -169.99 -4.67 17.51 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 18 H -0.26 -6.42 6.54 56.52 0.37 -6.05 16 19 C 0.03 0.31 11.75 -16.64 -0.20 0.11 16 20 N -0.56 -3.99 6.09 -10.06 -0.06 -4.05 16 21 H 0.42 1.20 8.96 -40.82 -0.37 0.83 16 22 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 23 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 25 H 0.41 6.21 8.19 -40.82 -0.33 5.88 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 31 H 0.01 0.35 7.57 -51.93 -0.39 -0.05 16 32 H 0.26 7.68 8.31 -40.82 -0.34 7.35 16 33 H 0.19 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 290.28 15.07 4.37 4.37 Total: -1.00 -35.86 290.28 -6.81 -42.67 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -4.43 Total: 0.62 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -2.46 Total: -4.93 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: 0.29 Total: -49.66 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.09 Total: -10.58 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.67 Total: 17.51 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -35.86 -6.81 -42.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264959482.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.984 kcal (2) G-P(sol) polarization free energy of solvation -35.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds