Wall clock time and date at job start Thu Apr 9 2020 12:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30147 * 125.48506 * 2 1 4 4 C 1.35745 * 108.98654 * 180.02562 * 3 2 1 5 5 C 1.47326 * 126.21930 * 180.26492 * 4 3 2 6 6 O 1.21612 * 120.00180 * 173.16599 * 5 4 3 7 7 N 1.34777 * 119.99668 * 353.16815 * 5 4 3 8 8 C 1.46496 * 120.00413 * 3.43021 * 7 5 4 9 9 C 1.46505 * 119.99549 * 183.42586 * 7 5 4 10 10 H 1.09001 * 109.47245 * 0.02562 * 9 7 5 11 11 C 1.53011 * 109.46756 * 120.00152 * 9 7 5 12 12 C 1.50700 * 109.47182 * 239.99713 * 9 7 5 13 13 H 1.07999 * 119.99882 * 0.02562 * 12 9 7 14 14 C 1.37879 * 119.99585 * 179.97438 * 12 9 7 15 15 N 1.31503 * 120.00351 * 0.02562 * 14 12 9 16 16 Si 1.86799 * 119.99479 * 180.02562 * 14 12 9 17 17 H 1.48498 * 109.47385 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46944 * 120.00361 * 16 14 12 19 19 H 1.48501 * 109.47495 * 240.00161 * 16 14 12 20 20 C 1.36430 * 107.55928 * 0.02562 * 4 3 2 21 21 N 1.35863 * 125.48173 * 180.02562 * 2 1 3 22 22 H 0.96996 * 126.17703 * 0.02894 * 21 2 1 23 23 H 1.09003 * 109.47188 * 269.99657 * 1 2 3 24 24 H 1.09000 * 109.47178 * 29.99736 * 1 2 3 25 25 H 1.08997 * 109.47286 * 149.99623 * 1 2 3 26 26 H 1.08997 * 109.47442 * 84.10283 * 8 7 5 27 27 H 1.09008 * 109.47139 * 204.10094 * 8 7 5 28 28 H 1.09001 * 109.46948 * 324.10085 * 8 7 5 29 29 H 1.09001 * 109.46983 * 60.00159 * 11 9 7 30 30 H 1.08996 * 109.46960 * 179.97438 * 11 9 7 31 31 H 1.08999 * 109.46629 * 300.00080 * 11 9 7 32 32 H 0.97007 * 120.00027 * 179.97438 * 15 14 12 33 33 H 1.08000 * 126.60167 * 179.97438 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2625 1.0597 0.0000 4 6 3.5641 0.6742 -0.0006 5 6 4.7363 1.5666 0.0047 6 8 5.8534 1.1024 0.1289 7 7 4.5705 2.8976 -0.1280 8 6 3.2215 3.4640 -0.2021 9 6 5.7395 3.7779 -0.1982 10 1 6.6487 3.1808 -0.1276 11 6 5.7289 4.5347 -1.5280 12 6 5.6953 4.7634 0.9410 13 1 4.8784 4.7365 1.6469 14 6 6.6984 5.6988 1.0826 15 7 7.6933 5.7312 0.2233 16 14 6.6439 6.9199 2.4951 17 1 5.4303 6.6748 3.3149 18 1 7.8536 6.7534 3.3402 19 1 6.6051 8.3021 1.9534 20 6 3.5893 -0.6898 -0.0015 21 7 2.2956 -1.1063 -0.0005 22 1 1.9904 -2.0270 -0.0013 23 1 -0.3634 -0.0001 1.0277 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3634 -0.8899 -0.5139 26 1 2.8318 3.6074 0.8057 27 1 3.2583 4.4239 -0.7174 28 1 2.5708 2.7823 -0.7497 29 1 4.8197 5.1317 -1.5990 30 1 6.5983 5.1899 -1.5800 31 1 5.7608 3.8218 -2.3519 32 1 8.3988 6.3896 0.3227 33 1 4.4681 -1.3176 -0.0025 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268258336.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:39 Heat of formation + Delta-G solvation = 28.923540 kcal Electronic energy + Delta-G solvation = -16889.263749 eV Core-core repulsion = 14144.493756 eV Total energy + Delta-G solvation = -2744.769993 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.97931 -38.47315 -35.13792 -33.06309 -32.21042 -31.76153 -29.19791 -27.08491 -25.74426 -25.08627 -23.21859 -20.80782 -20.32315 -18.71800 -17.40279 -16.30045 -15.59214 -15.43586 -15.10966 -14.30614 -13.97957 -13.91127 -13.42319 -12.84495 -12.74603 -12.52675 -12.36208 -11.99440 -11.50881 -11.35112 -10.96819 -10.69278 -10.59930 -10.13299 -10.06355 -9.97888 -9.66579 -9.03829 -8.90534 -8.36336 -8.31770 -7.32841 -5.95856 -4.02490 1.87027 2.66189 3.00374 3.33966 3.41280 3.46153 4.11358 4.22376 4.40613 4.53908 4.90200 5.22388 5.33551 5.34900 5.38993 5.62541 5.76282 5.97077 6.32573 6.44711 6.66021 6.82678 6.92980 7.02435 7.19905 7.28201 7.63371 7.68021 7.85709 7.98708 8.16493 8.33896 8.73845 8.97325 9.24246 9.63667 11.09535 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.038093 B = 0.006264 C = 0.005965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.871011 B = 4469.035749 C = 4693.297620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.195 3.805 3 N -0.451 5.451 4 C -0.037 4.037 5 C 0.582 3.418 6 O -0.560 6.560 7 N -0.575 5.575 8 C 0.088 3.912 9 C 0.255 3.745 10 H 0.063 0.937 11 C -0.146 4.146 12 C -0.518 4.518 13 H 0.060 0.940 14 C 0.062 3.938 15 N -0.890 5.890 16 Si 0.898 3.102 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.018 3.982 21 N -0.569 5.569 22 H 0.419 0.581 23 H 0.080 0.920 24 H 0.092 0.908 25 H 0.071 0.929 26 H 0.042 0.958 27 H 0.060 0.940 28 H 0.085 0.915 29 H 0.031 0.969 30 H 0.093 0.907 31 H 0.011 0.989 32 H 0.261 0.739 33 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.280 -11.994 -2.019 18.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.070 4.070 3 N -0.173 5.173 4 C -0.166 4.166 5 C 0.368 3.632 6 O -0.440 6.440 7 N -0.304 5.304 8 C -0.056 4.056 9 C 0.155 3.845 10 H 0.081 0.919 11 C -0.204 4.204 12 C -0.557 4.557 13 H 0.078 0.922 14 C -0.139 4.139 15 N -0.529 5.529 16 Si 0.726 3.274 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.120 4.120 21 N -0.173 5.173 22 H 0.257 0.743 23 H 0.098 0.902 24 H 0.110 0.890 25 H 0.090 0.910 26 H 0.060 0.940 27 H 0.079 0.921 28 H 0.103 0.897 29 H 0.050 0.950 30 H 0.112 0.888 31 H 0.030 0.970 32 H 0.071 0.929 33 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -13.754 -11.185 -1.994 17.839 hybrid contribution 0.120 -0.527 0.822 0.984 sum -13.634 -11.712 -1.172 18.012 Atomic orbital electron populations 1.20173 0.84683 1.04002 1.03557 1.23664 0.95779 0.81658 1.05854 1.70839 1.01234 1.27090 1.18182 1.21060 0.91957 0.92080 1.11475 1.16967 0.86055 0.82257 0.77921 1.90730 1.24530 1.75890 1.52883 1.48055 1.09051 1.05345 1.67937 1.21869 0.83387 0.99088 1.01213 1.18985 0.83684 0.88056 0.93786 0.91932 1.22090 1.02509 0.99847 0.95996 1.21390 1.08446 1.14961 1.10926 0.92204 1.24890 0.95155 0.97482 0.96385 1.69895 1.11302 1.35847 1.35856 0.86441 0.77980 0.80756 0.82227 1.19835 1.20998 1.20991 1.22718 0.86991 0.96234 1.06057 1.43222 1.06586 1.10081 1.57398 0.74341 0.90156 0.88957 0.91007 0.93974 0.92131 0.89672 0.95023 0.88829 0.97009 0.92882 0.79417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.48 10.51 36.01 0.38 -0.10 16 2 C 0.19 2.35 8.14 -154.95 -1.26 1.09 16 3 N -0.45 -7.52 7.79 -7.23 -0.06 -7.57 16 4 C -0.04 -0.69 6.65 -83.09 -0.55 -1.24 16 5 C 0.58 13.75 7.66 -12.56 -0.10 13.66 16 6 O -0.56 -14.83 16.22 5.27 0.09 -14.74 16 7 N -0.58 -13.96 2.75 -176.56 -0.49 -14.44 16 8 C 0.09 1.82 8.80 59.84 0.53 2.35 16 9 C 0.26 7.01 2.63 -69.07 -0.18 6.83 16 10 H 0.06 1.95 6.90 -51.93 -0.36 1.59 16 11 C -0.15 -3.72 8.96 37.16 0.33 -3.39 16 12 C -0.52 -14.94 8.37 -34.44 -0.29 -15.23 16 13 H 0.06 1.73 7.65 -52.49 -0.40 1.33 16 14 C 0.06 1.78 5.30 -17.82 -0.09 1.69 16 15 N -0.89 -26.12 11.32 55.43 0.63 -25.49 16 16 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 17 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 C 0.02 0.25 11.78 -16.40 -0.19 0.06 16 21 N -0.57 -5.88 6.11 -9.94 -0.06 -5.94 16 22 H 0.42 2.44 8.96 -40.82 -0.37 2.07 16 23 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.06 1.24 6.44 -51.92 -0.33 0.90 16 28 H 0.09 1.61 5.31 -51.93 -0.28 1.33 16 29 H 0.03 0.75 6.67 -51.93 -0.35 0.40 16 30 H 0.09 2.57 6.07 -51.93 -0.32 2.25 16 31 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 33 H 0.19 2.32 8.06 -52.49 -0.42 1.90 16 LS Contribution 278.94 15.07 4.20 4.20 Total: -1.00 -35.06 278.94 -6.21 -41.26 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -4.07 Total: 0.06 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: -1.43 Total: 5.73 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: 0.02 Total: -53.45 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: 0.09 Total: -14.74 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -35.06 -6.21 -41.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268258336.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.186 kcal (2) G-P(sol) polarization free energy of solvation -35.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds