Wall clock time and date at job start Thu Apr 9 2020 12:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30147 * 125.48506 * 2 1 4 4 C 1.35745 * 108.98654 * 180.02562 * 3 2 1 5 5 C 1.47326 * 126.21930 * 180.26492 * 4 3 2 6 6 O 1.21612 * 120.00180 * 173.16599 * 5 4 3 7 7 N 1.34777 * 119.99668 * 353.16815 * 5 4 3 8 8 C 1.46496 * 120.00413 * 3.43021 * 7 5 4 9 9 C 1.46505 * 119.99549 * 183.42586 * 7 5 4 10 10 H 1.09001 * 109.47245 * 0.02562 * 9 7 5 11 11 C 1.53011 * 109.46756 * 120.00152 * 9 7 5 12 12 C 1.50700 * 109.47182 * 239.99713 * 9 7 5 13 13 H 1.07999 * 119.99882 * 0.02562 * 12 9 7 14 14 C 1.37879 * 119.99585 * 179.97438 * 12 9 7 15 15 N 1.31503 * 120.00351 * 0.02562 * 14 12 9 16 16 Si 1.86799 * 119.99479 * 180.02562 * 14 12 9 17 17 H 1.48498 * 109.47385 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46944 * 120.00361 * 16 14 12 19 19 H 1.48501 * 109.47495 * 240.00161 * 16 14 12 20 20 C 1.36430 * 107.55928 * 0.02562 * 4 3 2 21 21 N 1.35863 * 125.48173 * 180.02562 * 2 1 3 22 22 H 0.96996 * 126.17703 * 0.02894 * 21 2 1 23 23 H 1.09003 * 109.47188 * 269.99657 * 1 2 3 24 24 H 1.09000 * 109.47178 * 29.99736 * 1 2 3 25 25 H 1.08997 * 109.47286 * 149.99623 * 1 2 3 26 26 H 1.08997 * 109.47442 * 84.10283 * 8 7 5 27 27 H 1.09008 * 109.47139 * 204.10094 * 8 7 5 28 28 H 1.09001 * 109.46948 * 324.10085 * 8 7 5 29 29 H 1.09001 * 109.46983 * 60.00159 * 11 9 7 30 30 H 1.08996 * 109.46960 * 179.97438 * 11 9 7 31 31 H 1.08999 * 109.46629 * 300.00080 * 11 9 7 32 32 H 0.97007 * 120.00027 * 179.97438 * 15 14 12 33 33 H 1.08000 * 126.60167 * 179.97438 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2625 1.0597 0.0000 4 6 3.5641 0.6742 -0.0006 5 6 4.7363 1.5666 0.0047 6 8 5.8534 1.1024 0.1289 7 7 4.5705 2.8976 -0.1280 8 6 3.2215 3.4640 -0.2021 9 6 5.7395 3.7779 -0.1982 10 1 6.6487 3.1808 -0.1276 11 6 5.7289 4.5347 -1.5280 12 6 5.6953 4.7634 0.9410 13 1 4.8784 4.7365 1.6469 14 6 6.6984 5.6988 1.0826 15 7 7.6933 5.7312 0.2233 16 14 6.6439 6.9199 2.4951 17 1 5.4303 6.6748 3.3149 18 1 7.8536 6.7534 3.3402 19 1 6.6051 8.3021 1.9534 20 6 3.5893 -0.6898 -0.0015 21 7 2.2956 -1.1063 -0.0005 22 1 1.9904 -2.0270 -0.0013 23 1 -0.3634 -0.0001 1.0277 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3634 -0.8899 -0.5139 26 1 2.8318 3.6074 0.8057 27 1 3.2583 4.4239 -0.7174 28 1 2.5708 2.7823 -0.7497 29 1 4.8197 5.1317 -1.5990 30 1 6.5983 5.1899 -1.5800 31 1 5.7608 3.8218 -2.3519 32 1 8.3988 6.3896 0.3227 33 1 4.4681 -1.3176 -0.0025 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268258336.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:39 Heat of formation + Delta-G solvation = 4.208905 kcal Electronic energy + Delta-G solvation = -16890.335456 eV Core-core repulsion = 14144.493756 eV Total energy + Delta-G solvation = -2745.841700 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.08808 -40.29472 -37.11580 -34.89289 -33.62479 -32.68905 -31.17432 -28.16559 -27.47676 -27.25327 -24.77573 -22.08376 -21.80779 -20.16729 -18.86276 -18.41802 -17.34821 -16.83291 -16.65332 -16.14753 -15.60197 -15.07925 -14.75834 -14.46107 -14.13321 -13.91058 -13.47932 -13.37122 -13.15063 -12.98400 -12.96422 -12.70492 -12.64847 -12.19619 -12.11468 -11.23818 -11.13707 -11.06005 -10.62561 -10.49891 -9.60248 -9.18302 -8.13976 -6.30649 0.63301 1.40305 1.41506 1.48379 1.54413 2.05911 2.36874 2.56288 2.61344 3.12783 3.35554 4.00569 4.11037 4.41810 4.58902 4.75169 4.81531 4.83435 4.86880 4.88653 4.91173 5.06651 5.08628 5.21931 5.44954 5.53029 5.65371 5.72567 6.04048 6.17083 6.46130 6.75621 6.82608 6.96086 7.32017 7.49547 8.90675 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.038093 B = 0.006264 C = 0.005965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.871011 B = 4469.035749 C = 4693.297620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.213 3.787 3 N -0.490 5.490 4 C -0.087 4.087 5 C 0.572 3.428 6 O -0.606 6.606 7 N -0.587 5.587 8 C 0.099 3.901 9 C 0.258 3.742 10 H 0.013 0.987 11 C -0.130 4.130 12 C -0.539 4.539 13 H 0.052 0.948 14 C 0.015 3.985 15 N -0.916 5.916 16 Si 0.968 3.032 17 H -0.270 1.270 18 H -0.281 1.281 19 H -0.270 1.270 20 C 0.045 3.955 21 N -0.544 5.544 22 H 0.445 0.555 23 H 0.095 0.905 24 H 0.092 0.908 25 H 0.108 0.892 26 H 0.037 0.963 27 H 0.058 0.942 28 H 0.107 0.893 29 H 0.045 0.955 30 H 0.072 0.928 31 H 0.020 0.980 32 H 0.266 0.734 33 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.949 -13.012 -1.638 21.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.053 4.053 3 N -0.212 5.212 4 C -0.215 4.215 5 C 0.361 3.639 6 O -0.489 6.489 7 N -0.316 5.316 8 C -0.044 4.044 9 C 0.156 3.844 10 H 0.031 0.969 11 C -0.189 4.189 12 C -0.577 4.577 13 H 0.071 0.929 14 C -0.184 4.184 15 N -0.555 5.555 16 Si 0.793 3.207 17 H -0.194 1.194 18 H -0.207 1.207 19 H -0.195 1.195 20 C -0.096 4.096 21 N -0.150 5.150 22 H 0.288 0.712 23 H 0.114 0.886 24 H 0.111 0.889 25 H 0.126 0.874 26 H 0.055 0.945 27 H 0.077 0.923 28 H 0.125 0.875 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.039 0.961 32 H 0.075 0.925 33 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -16.477 -12.233 -1.625 20.585 hybrid contribution 0.880 -0.348 0.695 1.174 sum -15.597 -12.580 -0.930 20.060 Atomic orbital electron populations 1.20433 0.80866 1.05842 1.05103 1.24514 0.97471 0.80852 1.02429 1.70632 1.00552 1.29572 1.20442 1.20454 0.91468 0.92863 1.16667 1.17688 0.87253 0.82412 0.76532 1.90674 1.26806 1.76594 1.54850 1.48075 1.09266 1.05736 1.68481 1.21920 0.81910 0.99324 1.01209 1.18645 0.83463 0.87692 0.94578 0.96945 1.21872 1.02125 0.99518 0.95376 1.21555 1.08781 1.15836 1.11536 0.92925 1.25745 0.94525 0.99181 0.98953 1.70020 1.11751 1.36482 1.37281 0.85361 0.77941 0.78593 0.78819 1.19438 1.20702 1.19526 1.22855 0.88976 0.94789 1.03025 1.43132 1.04839 1.11359 1.55647 0.71212 0.88604 0.88937 0.87378 0.94455 0.92298 0.87518 0.93614 0.90924 0.96072 0.92490 0.77827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.64 10.51 71.24 0.75 0.11 16 2 C 0.21 4.45 8.14 137.97 1.12 5.57 16 3 N -0.49 -15.60 7.79 -176.79 -1.38 -16.98 16 4 C -0.09 -3.26 6.65 40.51 0.27 -2.99 16 5 C 0.57 28.10 7.66 86.63 0.66 28.76 16 6 O -0.61 -33.86 16.22 -4.07 -0.07 -33.92 16 7 N -0.59 -29.56 2.75 -830.77 -2.29 -31.84 16 8 C 0.10 4.13 8.80 127.77 1.12 5.26 16 9 C 0.26 14.85 2.63 44.25 0.12 14.96 16 10 H 0.01 0.84 6.90 -2.39 -0.02 0.82 16 11 C -0.13 -6.85 8.96 71.99 0.65 -6.21 16 12 C -0.54 -31.97 8.37 25.60 0.21 -31.75 16 13 H 0.05 3.12 7.65 -2.91 -0.02 3.10 16 14 C 0.02 0.89 5.30 84.66 0.45 1.34 16 15 N -0.92 -55.03 11.32 21.45 0.24 -54.79 16 16 Si 0.97 45.44 29.54 68.60 2.03 47.47 16 17 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 18 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 20 C 0.04 1.19 11.78 83.64 0.98 2.18 16 21 N -0.54 -9.26 6.11 -185.37 -1.13 -10.39 16 22 H 0.44 3.04 8.96 -92.71 -0.83 2.21 16 23 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 26 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.06 2.42 6.44 -2.38 -0.02 2.40 16 28 H 0.11 4.00 5.31 -2.39 -0.01 3.99 16 29 H 0.04 2.21 6.67 -2.39 -0.02 2.19 16 30 H 0.07 4.12 6.07 -2.39 -0.01 4.10 16 31 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.27 14.94 8.31 -92.70 -0.77 14.17 16 33 H 0.20 4.70 8.06 -2.91 -0.02 4.67 16 Total: -1.00 -80.34 278.94 4.05 -76.29 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: 0.30 Total: 6.93 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: 6.34 Total: 17.23 kcal Atomic # 7 Polarization: -109.45 SS G_CDS: -4.55 Total: -114.00 kcal Atomic # 8 Polarization: -33.86 SS G_CDS: -0.07 Total: -33.92 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -80.34 4.05 -76.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268258336.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.504 kcal (2) G-P(sol) polarization free energy of solvation -80.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds