Wall clock time and date at job start Thu Apr 9 2020 12:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46490 * 109.47441 * 138.44285 * 3 2 1 5 5 C 1.37101 * 120.00243 * 264.16926 * 4 3 2 6 6 H 1.07996 * 119.99927 * 197.37993 * 5 4 3 7 7 C 1.38946 * 120.00008 * 17.37706 * 5 4 3 8 8 N 1.31414 * 119.99841 * 21.58150 * 7 5 4 9 9 Si 1.86791 * 120.00170 * 201.58371 * 7 5 4 10 10 H 1.48499 * 109.47636 * 89.99584 * 9 7 5 11 11 H 1.48503 * 109.47358 * 209.99768 * 9 7 5 12 12 H 1.48504 * 109.47063 * 329.99688 * 9 7 5 13 13 C 1.34785 * 120.00016 * 84.15862 * 4 3 2 14 14 O 1.21286 * 120.00063 * 179.97438 * 13 4 3 15 15 C 1.50697 * 119.99728 * 0.02562 * 13 4 3 16 16 H 1.08996 * 115.56723 * 325.70033 * 15 13 4 17 17 C 1.53006 * 117.49486 * 111.38697 * 15 13 4 18 18 C 1.53001 * 60.03308 * 107.50154 * 17 15 13 19 19 H 1.08998 * 117.50203 * 107.47740 * 18 17 15 20 20 O 1.42899 * 117.49456 * 252.47725 * 18 17 15 21 21 C 1.42904 * 113.99778 * 218.60268 * 20 18 17 22 22 C 1.53002 * 109.47127 * 179.97438 * 21 20 18 23 23 H 4.40645 * 5.51455 * 180.02562 * 4 1 2 24 24 H 1.09005 * 109.46959 * 18.44058 * 3 2 1 25 25 H 1.09007 * 109.46466 * 258.44395 * 3 2 1 26 26 H 0.97001 * 120.00023 * 180.02562 * 8 7 5 27 27 H 1.08995 * 117.50279 * 359.97438 * 17 15 13 28 28 H 1.09002 * 117.49725 * 214.99754 * 17 15 13 29 29 H 1.08994 * 109.47343 * 299.99868 * 21 20 18 30 30 H 1.09007 * 109.46798 * 60.00280 * 21 20 18 31 31 H 1.09000 * 109.46548 * 60.00383 * 22 21 20 32 32 H 1.08997 * 109.47087 * 180.02562 * 22 21 20 33 33 H 1.09004 * 109.47245 * 300.00435 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1340 1.0343 -0.9162 5 6 3.4764 0.7045 -2.2021 6 1 4.0879 1.3755 -2.7871 7 6 3.0368 -0.4930 -2.7527 8 7 1.9856 -1.1007 -2.2498 9 14 3.9398 -1.2393 -4.2076 10 1 5.0085 -2.1452 -3.7153 11 1 2.9830 -2.0101 -5.0417 12 1 4.5458 -0.1559 -5.0227 13 6 3.2461 2.3098 -0.4950 14 8 3.6505 3.1655 -1.2534 15 6 2.8700 2.6723 0.9186 16 1 2.0378 2.1105 1.3427 17 6 3.9982 3.0866 1.8655 18 6 3.0197 4.1372 1.3366 19 1 2.2859 4.5386 2.0355 20 8 3.5056 5.0573 0.3570 21 6 3.0150 6.3898 0.5175 22 6 3.5977 7.2833 -0.5794 23 1 -1.0501 0.0000 0.0003 24 1 3.0098 -0.9741 -0.3251 25 1 3.0092 0.2067 1.0069 26 1 1.6789 -1.9369 -2.6340 27 1 5.0123 3.0966 1.4662 28 1 3.9082 2.7971 2.9125 29 1 1.9274 6.3878 0.4453 30 1 3.3137 6.7719 1.4937 31 1 3.2993 6.9014 -1.5557 32 1 3.2239 8.2998 -0.4567 33 1 4.6853 7.2853 -0.5069 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281607364.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:07:17 Heat of formation + Delta-G solvation = 21.641626 kcal Electronic energy + Delta-G solvation = -16907.734973 eV Core-core repulsion = 14130.356461 eV Total energy + Delta-G solvation = -2777.378512 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.08221 -37.41875 -35.17231 -34.33877 -31.98596 -31.08856 -30.42273 -26.47644 -25.17179 -22.66496 -22.57291 -21.70512 -18.65254 -17.78735 -17.11616 -16.34644 -15.44892 -15.19008 -14.86930 -14.41904 -13.89800 -13.77630 -13.17601 -12.47923 -12.29264 -12.20510 -12.09199 -11.94519 -11.58957 -11.45079 -10.97318 -10.84004 -10.65485 -10.42490 -10.29098 -9.90381 -9.29443 -9.18239 -8.82450 -8.67340 -8.16823 -7.73993 -6.24463 -3.75348 3.19875 3.30315 3.35380 3.60818 3.87927 3.91982 4.09024 4.25180 4.48917 4.85081 5.09561 5.24639 5.28994 5.36939 5.46725 5.55148 5.56857 5.62151 5.76603 5.93723 6.04315 6.11430 6.14138 6.36536 6.40288 6.49084 6.83223 7.08824 7.65017 7.70887 8.17631 8.55235 8.86204 9.26393 9.47891 10.08616 10.77035 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.026311 B = 0.007595 C = 0.006510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.924539 B = 3685.530361 C = 4300.204145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C -0.110 4.110 3 C 0.234 3.766 4 N -0.445 5.445 5 C -0.310 4.310 6 H 0.103 0.897 7 C 0.028 3.972 8 N -0.866 5.866 9 Si 0.920 3.080 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.270 1.270 13 C 0.483 3.517 14 O -0.555 6.555 15 C -0.177 4.177 16 H 0.116 0.884 17 C -0.170 4.170 18 C 0.042 3.958 19 H 0.107 0.893 20 O -0.317 6.317 21 C 0.055 3.945 22 C -0.148 4.148 23 H 0.198 0.802 24 H 0.108 0.892 25 H 0.062 0.938 26 H 0.266 0.734 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.044 0.956 30 H 0.041 0.959 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.065 6.195 8.970 10.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 C -0.112 4.112 3 C 0.110 3.890 4 N -0.165 5.165 5 C -0.437 4.437 6 H 0.121 0.879 7 C -0.175 4.175 8 N -0.505 5.505 9 Si 0.747 3.253 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.195 1.195 13 C 0.271 3.729 14 O -0.436 6.436 15 C -0.198 4.198 16 H 0.134 0.866 17 C -0.208 4.208 18 C -0.017 4.017 19 H 0.125 0.875 20 O -0.234 6.234 21 C -0.022 4.022 22 C -0.205 4.205 23 H 0.215 0.785 24 H 0.126 0.874 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.120 0.880 28 H 0.118 0.882 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.333 6.405 8.345 10.525 hybrid contribution -0.350 -0.666 -0.538 0.925 sum -0.017 5.739 7.807 9.689 Atomic orbital electron populations 1.24260 0.95365 1.03613 1.05309 1.23311 0.94470 0.97470 0.95930 1.18242 0.84043 0.95092 0.91600 1.43651 1.56875 1.04817 1.11152 1.19663 1.29848 1.04429 0.89774 0.87921 1.25252 0.95276 0.98002 0.98976 1.70098 1.19932 1.18030 1.42405 0.86027 0.79159 0.79162 0.80986 1.20432 1.21220 1.19482 1.19051 0.83996 0.82512 0.87385 1.90576 1.49382 1.47527 1.56112 1.22842 1.01729 0.98422 0.96839 0.86637 1.23363 0.96605 1.02694 0.98149 1.22471 0.99303 0.86196 0.93715 0.87525 1.88246 1.68558 1.16912 1.49677 1.22472 0.97647 0.83984 0.98091 1.21683 1.01741 0.97620 0.99488 0.78476 0.87416 0.92036 0.92322 0.87976 0.88161 0.93819 0.94119 0.91462 0.91730 0.92056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.65 19.25 29.55 0.57 -5.08 16 2 C -0.11 -2.53 10.73 -37.12 -0.40 -2.93 16 3 C 0.23 5.32 4.80 -6.83 -0.03 5.29 16 4 N -0.45 -11.65 2.60 -117.94 -0.31 -11.95 16 5 C -0.31 -8.79 9.33 -14.93 -0.14 -8.93 16 6 H 0.10 3.08 7.38 -52.49 -0.39 2.69 16 7 C 0.03 0.76 4.86 -17.47 -0.08 0.67 16 8 N -0.87 -23.31 9.48 55.50 0.53 -22.79 16 9 Si 0.92 21.01 29.60 -169.99 -5.03 15.98 16 10 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 13 C 0.48 12.29 7.35 -10.98 -0.08 12.21 16 14 O -0.55 -16.05 14.58 -16.55 -0.24 -16.30 16 15 C -0.18 -3.46 4.81 -91.73 -0.44 -3.90 16 16 H 0.12 2.10 6.72 -51.93 -0.35 1.75 16 17 C -0.17 -2.73 10.18 -26.73 -0.27 -3.00 16 18 C 0.04 0.73 6.41 -26.69 -0.17 0.56 16 19 H 0.11 1.44 7.93 -51.93 -0.41 1.03 16 20 O -0.32 -6.22 8.48 -57.33 -0.49 -6.70 16 21 C 0.06 0.81 6.53 37.16 0.24 1.05 16 22 C -0.15 -1.99 10.28 37.16 0.38 -1.61 16 23 H 0.20 3.41 7.80 -54.08 -0.42 2.99 16 24 H 0.11 2.58 6.44 -51.93 -0.33 2.24 16 25 H 0.06 1.18 6.98 -51.92 -0.36 0.82 16 26 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 27 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 28 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.04 0.50 8.14 -51.92 -0.42 0.07 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 289.15 15.07 4.36 4.36 Total: -1.00 -33.13 289.15 -5.97 -39.10 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -4.36 Total: 3.97 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -0.43 Total: -5.66 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: 0.22 Total: -34.74 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.73 Total: -23.00 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -33.13 -5.97 -39.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281607364.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.738 kcal (2) G-P(sol) polarization free energy of solvation -33.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds