Wall clock time and date at job start Thu Apr 9 2020 12:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47141 * 75.43269 * 3 2 1 5 5 C 1.37094 * 119.99960 * 263.84146 * 4 3 2 6 6 H 1.07998 * 120.00109 * 199.83433 * 5 4 3 7 7 C 1.38954 * 120.00095 * 19.83490 * 5 4 3 8 8 N 1.31412 * 119.99824 * 21.70542 * 7 5 4 9 9 Si 1.86800 * 119.99985 * 201.71097 * 7 5 4 10 10 H 1.48494 * 109.47019 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.46973 * 119.99590 * 9 7 5 12 12 H 1.48498 * 109.46992 * 239.99490 * 9 7 5 13 13 C 1.34775 * 120.00174 * 83.84046 * 4 3 2 14 14 O 1.21291 * 120.00196 * 180.02562 * 13 4 3 15 15 C 1.50703 * 119.99800 * 0.02562 * 13 4 3 16 16 H 1.08995 * 115.56329 * 34.29629 * 15 13 4 17 17 C 1.53004 * 117.49915 * 248.60767 * 15 13 4 18 18 C 1.52999 * 117.49702 * 179.97438 * 15 13 4 19 19 H 1.09001 * 117.51629 * 214.97301 * 18 15 13 20 20 O 1.42899 * 117.50080 * 359.97438 * 18 15 13 21 21 C 1.42902 * 114.00278 * 210.01131 * 20 18 15 22 22 C 1.53002 * 109.46936 * 180.02562 * 21 20 18 23 23 H 4.40645 * 5.51365 * 180.02562 * 4 1 2 24 24 H 1.09000 * 109.47281 * 315.43036 * 3 2 1 25 25 H 1.09000 * 109.47050 * 195.43100 * 3 2 1 26 26 H 0.97003 * 119.99986 * 179.97438 * 8 7 5 27 27 H 1.08995 * 117.49722 * 145.02004 * 17 15 13 28 28 H 1.09002 * 117.49542 * 359.97438 * 17 15 13 29 29 H 1.08994 * 109.47288 * 300.00454 * 21 20 18 30 30 H 1.09002 * 109.46327 * 60.00269 * 21 20 18 31 31 H 1.08995 * 109.47485 * 60.00437 * 22 21 20 32 32 H 1.08999 * 109.47032 * 180.02562 * 22 21 20 33 33 H 1.09001 * 109.46982 * 300.00104 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1346 -0.3465 -1.3368 5 6 3.4838 -1.6407 -1.6243 6 1 4.1281 -1.8522 -2.4648 7 6 3.0086 -2.6804 -0.8343 8 7 1.9271 -2.5117 -0.1071 9 14 3.9073 -4.3178 -0.8058 10 1 5.0867 -4.2508 -1.7056 11 1 4.3564 -4.6119 0.5788 12 1 2.9927 -5.3924 -1.2684 13 6 3.2407 0.6063 -2.2840 14 8 3.6447 0.3188 -3.3909 15 6 2.8574 2.0291 -1.9678 16 1 3.0641 2.3565 -0.9489 17 6 1.6109 2.5937 -2.6521 18 6 3.0010 3.0644 -3.0852 19 1 3.3019 4.0729 -2.8016 20 8 3.4888 2.6083 -4.3485 21 6 4.2179 3.5954 -5.0808 22 6 4.6889 3.0002 -6.4093 23 1 -1.0499 0.0002 -0.0002 24 1 3.0098 -0.7313 0.7212 25 1 3.0090 0.9914 0.2734 26 1 1.5952 -3.2376 0.4441 27 1 0.9974 3.2924 -2.0834 28 1 1.0683 1.9361 -3.3314 29 1 3.5739 4.4529 -5.2752 30 1 5.0823 3.9148 -4.4985 31 1 3.8243 2.6811 -6.9913 32 1 5.2454 3.7530 -6.9677 33 1 5.3329 2.1425 -6.2152 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281607368.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:07:21 Heat of formation + Delta-G solvation = 22.536799 kcal Electronic energy + Delta-G solvation = -16937.758780 eV Core-core repulsion = 14160.419085 eV Total energy + Delta-G solvation = -2777.339694 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.06685 -37.40784 -35.15053 -34.31980 -31.95395 -31.07114 -30.41847 -26.47817 -25.16426 -22.67527 -22.57270 -21.65870 -18.67820 -17.73455 -17.08419 -16.39522 -15.47106 -15.18492 -14.80447 -14.38850 -14.03251 -13.63929 -13.12965 -12.50666 -12.28613 -12.18483 -12.10268 -11.96280 -11.55019 -11.44682 -10.98230 -10.82884 -10.64756 -10.41522 -10.25440 -9.89048 -9.25902 -9.13149 -8.84993 -8.62714 -8.15095 -7.71180 -6.23335 -3.75880 3.18507 3.30522 3.37598 3.66523 3.87528 3.93354 4.14242 4.26820 4.52813 4.87291 5.11573 5.24734 5.29093 5.37945 5.45530 5.54844 5.60279 5.67418 5.78228 5.87239 6.01592 6.13360 6.15772 6.37957 6.42452 6.53032 6.80043 7.11172 7.65504 7.72534 8.19461 8.55678 8.92075 9.27036 9.48012 10.09193 10.77846 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.026791 B = 0.007821 C = 0.006341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.890940 B = 3579.073480 C = 4414.525549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.107 4.107 3 C 0.235 3.765 4 N -0.445 5.445 5 C -0.311 4.311 6 H 0.102 0.898 7 C 0.030 3.970 8 N -0.863 5.863 9 Si 0.917 3.083 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.284 1.284 13 C 0.484 3.516 14 O -0.554 6.554 15 C -0.176 4.176 16 H 0.114 0.886 17 C -0.161 4.161 18 C 0.039 3.961 19 H 0.107 0.893 20 O -0.317 6.317 21 C 0.055 3.945 22 C -0.148 4.148 23 H 0.197 0.803 24 H 0.103 0.897 25 H 0.060 0.940 26 H 0.266 0.734 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.040 0.960 30 H 0.043 0.957 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.089 11.029 -1.006 11.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 C -0.109 4.109 3 C 0.112 3.888 4 N -0.165 5.165 5 C -0.438 4.438 6 H 0.120 0.880 7 C -0.174 4.174 8 N -0.502 5.502 9 Si 0.744 3.256 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.210 1.210 13 C 0.271 3.729 14 O -0.435 6.435 15 C -0.197 4.197 16 H 0.131 0.869 17 C -0.199 4.199 18 C -0.021 4.021 19 H 0.124 0.876 20 O -0.234 6.234 21 C -0.022 4.022 22 C -0.205 4.205 23 H 0.214 0.786 24 H 0.121 0.879 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.118 0.882 28 H 0.119 0.881 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.207 10.539 -1.525 10.717 hybrid contribution -0.099 -0.745 0.449 0.876 sum 1.108 9.793 -1.076 9.914 Atomic orbital electron populations 1.24194 0.95299 1.06600 1.02288 1.23176 0.94337 0.95136 0.98270 1.18175 0.84334 0.98687 0.87641 1.43645 1.56843 1.07793 1.08200 1.19654 1.27878 0.80863 1.15448 0.88025 1.25271 0.95105 0.99307 0.97743 1.70105 1.18103 1.33322 1.28637 0.86011 0.79794 0.81814 0.77969 1.19281 1.20716 1.21007 1.19070 0.83889 0.85082 0.84836 1.90579 1.49326 1.81968 1.21638 1.22772 1.03813 0.95597 0.97541 0.86859 1.23290 0.90799 1.03110 1.02724 1.22513 0.98331 0.95209 0.86024 0.87581 1.88259 1.71160 1.35487 1.28478 1.22464 0.94787 0.91440 0.93486 1.21683 1.01794 1.01607 0.95463 0.78593 0.87873 0.92167 0.92400 0.88212 0.88123 0.94149 0.93864 0.92041 0.91753 0.91491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.63 19.25 29.55 0.57 -5.06 16 2 C -0.11 -2.46 11.28 -37.12 -0.42 -2.88 16 3 C 0.24 5.32 4.91 -6.83 -0.03 5.29 16 4 N -0.45 -11.61 2.60 -117.93 -0.31 -11.92 16 5 C -0.31 -8.82 9.28 -14.93 -0.14 -8.95 16 6 H 0.10 3.05 7.42 -52.49 -0.39 2.66 16 7 C 0.03 0.79 4.83 -17.47 -0.08 0.71 16 8 N -0.86 -23.31 9.59 55.50 0.53 -22.78 16 9 Si 0.92 20.97 29.61 -169.99 -5.03 15.94 16 10 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.48 12.28 7.34 -10.98 -0.08 12.20 16 14 O -0.55 -16.03 14.59 -16.58 -0.24 -16.28 16 15 C -0.18 -3.42 5.16 -91.77 -0.47 -3.89 16 16 H 0.11 1.89 6.53 -51.93 -0.34 1.55 16 17 C -0.16 -2.78 10.18 -26.72 -0.27 -3.05 16 18 C 0.04 0.66 6.40 -26.72 -0.17 0.49 16 19 H 0.11 1.39 7.93 -51.93 -0.41 0.98 16 20 O -0.32 -6.22 8.48 -57.36 -0.49 -6.70 16 21 C 0.06 0.80 6.53 37.16 0.24 1.04 16 22 C -0.15 -1.98 10.28 37.16 0.38 -1.60 16 23 H 0.20 3.43 7.80 -54.10 -0.42 3.00 16 24 H 0.10 2.45 6.60 -51.93 -0.34 2.10 16 25 H 0.06 1.13 6.28 -51.93 -0.33 0.81 16 26 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 27 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 28 H 0.10 1.98 8.14 -51.93 -0.42 1.56 16 29 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 289.50 15.07 4.36 4.36 Total: -1.00 -33.30 289.50 -5.98 -39.28 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -4.33 Total: 3.81 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -0.48 Total: -5.72 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: 0.23 Total: -34.69 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.73 Total: -22.98 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -33.30 -5.98 -39.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281607368.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.815 kcal (2) G-P(sol) polarization free energy of solvation -33.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds